Incidental Mutation 'R3195:Gm3604'
ID 267611
Institutional Source Beutler Lab
Gene Symbol Gm3604
Ensembl Gene ENSMUSG00000094942
Gene Name predicted gene 3604
Synonyms
MMRRC Submission 040616-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.128) question?
Stock # R3195 (G1)
Quality Score 225
Status Validated
Chromosome 13
Chromosomal Location 62516142-62530991 bp(-) (GRCm39)
Type of Mutation nonsense
DNA Base Change (assembly) A to T at 62517868 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Cysteine to Stop codon at position 163 (C163*)
Ref Sequence ENSEMBL: ENSMUSP00000139845 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000107989] [ENSMUST00000187656] [ENSMUST00000202194]
AlphaFold A0A087WPN2
Predicted Effect probably null
Transcript: ENSMUST00000107989
AA Change: C162*
SMART Domains Protein: ENSMUSP00000103623
Gene: ENSMUSG00000094942
AA Change: C162*

DomainStartEndE-ValueType
KRAB 3 65 4.49e-17 SMART
ZnF_C2H2 132 154 2.71e-2 SMART
ZnF_C2H2 160 182 1.3e-4 SMART
ZnF_C2H2 188 210 5.21e-4 SMART
ZnF_C2H2 216 238 1.82e-3 SMART
ZnF_C2H2 244 266 7.78e-3 SMART
ZnF_C2H2 272 294 3.69e-4 SMART
ZnF_C2H2 300 322 3.95e-4 SMART
ZnF_C2H2 328 350 9.08e-4 SMART
ZnF_C2H2 356 378 1.45e-2 SMART
ZnF_C2H2 384 406 1.92e-2 SMART
ZnF_C2H2 412 434 1.3e-4 SMART
ZnF_C2H2 440 462 4.87e-4 SMART
ZnF_C2H2 468 490 1.4e-4 SMART
ZnF_C2H2 496 518 3.95e-4 SMART
ZnF_C2H2 524 546 2.29e1 SMART
Predicted Effect probably null
Transcript: ENSMUST00000187656
AA Change: C163*
SMART Domains Protein: ENSMUSP00000139845
Gene: ENSMUSG00000094942
AA Change: C163*

DomainStartEndE-ValueType
KRAB 4 66 1.9e-19 SMART
ZnF_C2H2 133 155 1.2e-4 SMART
ZnF_C2H2 161 183 5.5e-7 SMART
ZnF_C2H2 189 211 2.3e-6 SMART
ZnF_C2H2 217 239 7.5e-6 SMART
ZnF_C2H2 245 267 3.4e-5 SMART
ZnF_C2H2 273 295 1.5e-6 SMART
ZnF_C2H2 301 323 1.7e-6 SMART
ZnF_C2H2 329 351 3.7e-6 SMART
ZnF_C2H2 357 379 6.3e-5 SMART
ZnF_C2H2 385 407 7.8e-5 SMART
ZnF_C2H2 413 435 5.5e-7 SMART
ZnF_C2H2 441 463 2e-6 SMART
ZnF_C2H2 469 491 5.8e-7 SMART
ZnF_C2H2 497 519 1.6e-6 SMART
ZnF_C2H2 525 547 9.6e-2 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000202194
SMART Domains Protein: ENSMUSP00000144048
Gene: ENSMUSG00000094942

DomainStartEndE-ValueType
KRAB 4 65 1.2e-19 SMART
Meta Mutation Damage Score 0.9755 question?
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.6%
  • 10x: 97.3%
  • 20x: 95.3%
Validation Efficiency 97% (33/34)
Allele List at MGI
Other mutations in this stock
Total: 33 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
9130401M01Rik A T 15: 57,892,132 (GRCm39) N158K probably benign Het
Acnat1 G C 4: 49,447,457 (GRCm39) P357A probably damaging Het
Akap6 T A 12: 53,119,240 (GRCm39) C1102* probably null Het
Calb2 C T 8: 110,883,635 (GRCm39) probably benign Het
Cdh15 G A 8: 123,583,374 (GRCm39) R59H probably benign Het
Csgalnact1 TGG TG 8: 68,913,737 (GRCm39) probably null Het
Dmtf1 A G 5: 9,182,454 (GRCm39) probably benign Het
Focad A G 4: 88,325,588 (GRCm39) E151G possibly damaging Het
Frem1 A G 4: 82,932,351 (GRCm39) F117L probably damaging Het
Gab2 A G 7: 96,921,236 (GRCm39) T204A probably benign Het
Gapdh T C 6: 125,139,583 (GRCm39) N229S possibly damaging Het
Iqub G C 6: 24,462,036 (GRCm39) probably benign Het
Kirrel1 C T 3: 86,996,458 (GRCm39) M380I probably null Het
L1td1 A G 4: 98,625,755 (GRCm39) E650G possibly damaging Het
Lilra5 G A 7: 4,241,756 (GRCm39) G185D probably damaging Het
Lpin1 A G 12: 16,615,584 (GRCm39) S323P possibly damaging Het
Mmp7 C A 9: 7,692,219 (GRCm39) S31R probably benign Het
Myo1h G A 5: 114,466,801 (GRCm39) C283Y probably benign Het
Nfkbiz A G 16: 55,639,991 (GRCm39) L122P probably damaging Het
Or10c1 A G 17: 37,522,427 (GRCm39) F106L possibly damaging Het
Or1e35 T C 11: 73,797,484 (GRCm39) Y278C possibly damaging Het
Paqr8 A G 1: 21,005,257 (GRCm39) E137G probably damaging Het
Pde4b G A 4: 102,456,840 (GRCm39) A429T probably damaging Het
Pes1 T C 11: 3,925,736 (GRCm39) probably benign Het
Reln A T 5: 22,245,418 (GRCm39) I730N possibly damaging Het
Sh3rf1 C T 8: 61,679,321 (GRCm39) P121L probably benign Het
Skint9 T G 4: 112,248,148 (GRCm39) I199L probably benign Het
Slc13a4 C T 6: 35,245,861 (GRCm39) V595M probably damaging Het
Smarca2 A G 19: 26,661,222 (GRCm39) E939G possibly damaging Het
Spg11 A G 2: 121,913,879 (GRCm39) probably null Het
Trpm1 T A 7: 63,849,061 (GRCm39) Y102* probably null Het
Usp42 A G 5: 143,702,954 (GRCm39) S556P probably benign Het
Zfp957 A G 14: 79,450,332 (GRCm39) V489A probably damaging Het
Other mutations in Gm3604
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01869:Gm3604 APN 13 62,517,954 (GRCm39) missense probably damaging 1.00
IGL02601:Gm3604 APN 13 62,517,990 (GRCm39) missense possibly damaging 0.79
IGL03386:Gm3604 APN 13 62,517,981 (GRCm39) missense possibly damaging 0.95
R1539:Gm3604 UTSW 13 62,519,414 (GRCm39) missense possibly damaging 0.70
R1771:Gm3604 UTSW 13 62,517,888 (GRCm39) nonsense probably null
R1776:Gm3604 UTSW 13 62,517,888 (GRCm39) nonsense probably null
R1919:Gm3604 UTSW 13 62,517,756 (GRCm39) missense probably benign 0.02
R1954:Gm3604 UTSW 13 62,517,025 (GRCm39) missense probably damaging 0.97
R2093:Gm3604 UTSW 13 62,517,420 (GRCm39) missense possibly damaging 0.50
R2291:Gm3604 UTSW 13 62,519,657 (GRCm39) missense probably damaging 0.99
R2909:Gm3604 UTSW 13 62,516,832 (GRCm39) missense probably benign 0.43
R3196:Gm3604 UTSW 13 62,517,868 (GRCm39) nonsense probably null
R3924:Gm3604 UTSW 13 62,518,044 (GRCm39) missense probably damaging 0.99
R4328:Gm3604 UTSW 13 62,517,079 (GRCm39) missense possibly damaging 0.88
R4543:Gm3604 UTSW 13 62,517,970 (GRCm39) missense probably benign
R4830:Gm3604 UTSW 13 62,516,857 (GRCm39) missense probably damaging 0.98
R5129:Gm3604 UTSW 13 62,517,588 (GRCm39) missense probably benign 0.00
R5496:Gm3604 UTSW 13 62,519,393 (GRCm39) missense possibly damaging 0.85
R6184:Gm3604 UTSW 13 62,519,659 (GRCm39) missense probably damaging 1.00
R6426:Gm3604 UTSW 13 62,517,436 (GRCm39) missense probably damaging 1.00
R6925:Gm3604 UTSW 13 62,517,204 (GRCm39) missense probably benign 0.16
R7080:Gm3604 UTSW 13 62,518,109 (GRCm39) missense probably damaging 1.00
R7182:Gm3604 UTSW 13 62,519,689 (GRCm39) missense probably damaging 0.99
R7572:Gm3604 UTSW 13 62,518,060 (GRCm39) missense probably damaging 1.00
R7750:Gm3604 UTSW 13 62,517,810 (GRCm39) missense possibly damaging 0.92
R7960:Gm3604 UTSW 13 62,517,587 (GRCm39) missense probably damaging 0.97
R8023:Gm3604 UTSW 13 62,517,683 (GRCm39) missense probably damaging 1.00
R8062:Gm3604 UTSW 13 62,518,155 (GRCm39) missense probably damaging 0.98
R8093:Gm3604 UTSW 13 62,517,363 (GRCm39) missense probably damaging 0.99
R8532:Gm3604 UTSW 13 62,516,769 (GRCm39) missense possibly damaging 0.57
R9262:Gm3604 UTSW 13 62,517,697 (GRCm39) missense probably damaging 0.99
R9659:Gm3604 UTSW 13 62,519,724 (GRCm39) missense possibly damaging 0.93
R9673:Gm3604 UTSW 13 62,517,969 (GRCm39) missense probably benign 0.00
R9788:Gm3604 UTSW 13 62,519,724 (GRCm39) missense possibly damaging 0.93
Predicted Primers PCR Primer
(F):5'- GGAGACTACATTTCTCAGAAAAGGC -3'
(R):5'- GTTCATACAGAAAAGATCCCCTCTG -3'

Sequencing Primer
(F):5'- TCTCAGAAAAGGCTTTATCACATTG -3'
(R):5'- CTCTGAAGTTATTCACTGTGTCGAAG -3'
Posted On 2015-02-18