Incidental Mutation 'R3692:Mat1a'
| ID |
268834 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Mat1a
|
| Ensembl Gene |
ENSMUSG00000037798 |
| Gene Name |
methionine adenosyltransferase 1A |
| Synonyms |
SAMS, MAT, SAMS1, AdoMet, Ams, MATA1 |
| MMRRC Submission |
040687-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.111)
|
| Stock # |
R3692 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
14 |
| Chromosomal Location |
40826992-40846369 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 40843338 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Tyrosine to Cysteine
at position 288
(Y288C)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000153488
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000047286]
[ENSMUST00000224514]
[ENSMUST00000225720]
|
| AlphaFold |
Q91X83 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000047286
AA Change: Y288C
PolyPhen 2
Score 0.987 (Sensitivity: 0.73; Specificity: 0.96)
|
| SMART Domains |
Protein: ENSMUSP00000044288
Gene: ENSMUSG00000037798
AA Change: Y288C
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:S-AdoMet_synt_N
|
18 |
116 |
1.4e-44 |
PFAM |
|
Pfam:S-AdoMet_synt_M
|
130 |
251 |
3.1e-46 |
PFAM |
|
Pfam:S-AdoMet_synt_C
|
253 |
390 |
1.6e-69 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000224514
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000225720
AA Change: Y288C
PolyPhen 2
Score 0.987 (Sensitivity: 0.73; Specificity: 0.96)
|
| Meta Mutation Damage Score |
0.0996 |
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.6%
- 10x: 97.3%
- 20x: 95.3%
|
| Validation Efficiency |
98% (42/43) |
| MGI Phenotype |
FUNCTION: This gene encodes a member of the AdoMet synthase family. Methionine adenosyltransferase is a product of this gene (the alpha form) and the beta form and catalyzes the formation of S-adenosylmethionine from methionine and ATP.[provided by RefSeq, Jan 2013]
PHENOTYPE: Mice homozygous for disruptions in this gene have significantly elevated levels of methionine in the circulation and develop liver steatosis with age. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 39 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adam1a |
T |
C |
5: 121,657,385 (GRCm39) |
D636G |
probably damaging |
Het |
| Adgrv1 |
A |
G |
13: 81,672,719 (GRCm39) |
V2218A |
possibly damaging |
Het |
| Ano5 |
T |
A |
7: 51,240,327 (GRCm39) |
Y752N |
probably damaging |
Het |
| Bltp2 |
A |
G |
11: 78,160,335 (GRCm39) |
D598G |
probably damaging |
Het |
| Calca |
T |
C |
7: 114,233,796 (GRCm39) |
E45G |
probably damaging |
Het |
| Cdk8 |
C |
T |
5: 146,220,478 (GRCm39) |
R166* |
probably null |
Het |
| Chsy1 |
T |
A |
7: 65,821,001 (GRCm39) |
M412K |
probably damaging |
Het |
| Cic |
T |
A |
7: 24,988,338 (GRCm39) |
Y1675* |
probably null |
Het |
| Col1a2 |
T |
A |
6: 4,510,710 (GRCm39) |
D53E |
possibly damaging |
Het |
| Dennd6b |
A |
G |
15: 89,071,030 (GRCm39) |
|
probably benign |
Het |
| Fut10 |
T |
A |
8: 31,726,048 (GRCm39) |
Y268N |
possibly damaging |
Het |
| Glrx3 |
T |
C |
7: 137,060,846 (GRCm39) |
|
probably benign |
Het |
| Gucy1b2 |
T |
A |
14: 62,642,076 (GRCm39) |
N697I |
probably damaging |
Het |
| Ifi208 |
T |
C |
1: 173,510,438 (GRCm39) |
S198P |
possibly damaging |
Het |
| Krt34 |
A |
G |
11: 99,929,857 (GRCm39) |
V213A |
probably damaging |
Het |
| Lats2 |
T |
C |
14: 57,928,998 (GRCm39) |
N959S |
probably damaging |
Het |
| Mtif2 |
A |
T |
11: 29,490,718 (GRCm39) |
H474L |
probably benign |
Het |
| Myh8 |
A |
G |
11: 67,192,744 (GRCm39) |
I1512V |
probably damaging |
Het |
| Nkx2-6 |
T |
C |
14: 69,409,476 (GRCm39) |
S76P |
probably benign |
Het |
| Noxred1 |
G |
A |
12: 87,280,240 (GRCm39) |
R31W |
probably benign |
Het |
| Or14c46 |
T |
A |
7: 85,918,703 (GRCm39) |
Q98L |
probably damaging |
Het |
| Or4a69 |
T |
A |
2: 89,313,240 (GRCm39) |
M80L |
probably benign |
Het |
| Pcdhb16 |
C |
A |
18: 37,611,340 (GRCm39) |
T100K |
probably benign |
Het |
| Pcdhga10 |
T |
C |
18: 37,881,384 (GRCm39) |
C382R |
probably damaging |
Het |
| Pdgfra |
A |
T |
5: 75,349,948 (GRCm39) |
Y944F |
possibly damaging |
Het |
| Pkhd1 |
A |
G |
1: 20,625,353 (GRCm39) |
I741T |
possibly damaging |
Het |
| Ppp1r10 |
A |
G |
17: 36,241,760 (GRCm39) |
D845G |
unknown |
Het |
| Rfk |
C |
A |
19: 17,376,834 (GRCm39) |
|
probably null |
Het |
| Rgs11 |
C |
T |
17: 26,423,302 (GRCm39) |
|
probably benign |
Het |
| Spata31d1b |
T |
C |
13: 59,865,705 (GRCm39) |
V951A |
probably benign |
Het |
| St3gal5 |
T |
C |
6: 72,126,013 (GRCm39) |
V286A |
probably benign |
Het |
| St7l |
T |
C |
3: 104,798,870 (GRCm39) |
M320T |
probably benign |
Het |
| Tnfrsf1b |
G |
T |
4: 144,954,092 (GRCm39) |
Q86K |
probably benign |
Het |
| Tox |
T |
C |
4: 6,697,535 (GRCm39) |
I423V |
probably benign |
Het |
| Tpbpa |
T |
A |
13: 61,087,827 (GRCm39) |
H88L |
probably benign |
Het |
| Vmn1r236 |
A |
G |
17: 21,507,068 (GRCm39) |
Y62C |
probably benign |
Het |
| Ythdc1 |
A |
G |
5: 86,970,526 (GRCm39) |
I399M |
probably damaging |
Het |
| Zfp948 |
T |
G |
17: 21,807,838 (GRCm39) |
D343E |
probably benign |
Het |
| Zswim6 |
A |
G |
13: 107,863,076 (GRCm39) |
|
noncoding transcript |
Het |
|
| Other mutations in Mat1a |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00477:Mat1a
|
APN |
14 |
40,827,651 (GRCm39) |
splice site |
probably benign |
|
|
IGL01506:Mat1a
|
APN |
14 |
40,831,395 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01616:Mat1a
|
APN |
14 |
40,831,436 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01701:Mat1a
|
APN |
14 |
40,836,772 (GRCm39) |
missense |
probably benign |
|
|
IGL01921:Mat1a
|
APN |
14 |
40,836,292 (GRCm39) |
splice site |
probably benign |
|
|
IGL02681:Mat1a
|
APN |
14 |
40,844,453 (GRCm39) |
splice site |
probably benign |
|
|
IGL03294:Mat1a
|
APN |
14 |
40,827,561 (GRCm39) |
missense |
probably benign |
0.21 |
|
ANU74:Mat1a
|
UTSW |
14 |
40,833,099 (GRCm39) |
missense |
probably benign |
0.12 |
|
R0102:Mat1a
|
UTSW |
14 |
40,842,187 (GRCm39) |
splice site |
probably benign |
|
|
R1445:Mat1a
|
UTSW |
14 |
40,843,797 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1917:Mat1a
|
UTSW |
14 |
40,843,394 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1968:Mat1a
|
UTSW |
14 |
40,832,991 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2518:Mat1a
|
UTSW |
14 |
40,844,469 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6546:Mat1a
|
UTSW |
14 |
40,843,379 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6601:Mat1a
|
UTSW |
14 |
40,827,561 (GRCm39) |
missense |
probably benign |
0.21 |
|
R7459:Mat1a
|
UTSW |
14 |
40,842,141 (GRCm39) |
missense |
probably benign |
0.11 |
|
R7657:Mat1a
|
UTSW |
14 |
40,844,476 (GRCm39) |
nonsense |
probably null |
|
|
R8497:Mat1a
|
UTSW |
14 |
40,843,851 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8865:Mat1a
|
UTSW |
14 |
40,843,788 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9240:Mat1a
|
UTSW |
14 |
40,827,573 (GRCm39) |
missense |
probably benign |
|
|
R9451:Mat1a
|
UTSW |
14 |
40,836,803 (GRCm39) |
missense |
probably damaging |
0.98 |
|
Z1176:Mat1a
|
UTSW |
14 |
40,827,467 (GRCm39) |
start gained |
probably benign |
|
|
| Predicted Primers |
PCR Primer
(F):5'- GAGAGAACTCACAGTTTCTGCC -3'
(R):5'- GCCAGTATCTCCTTACTCCAGG -3'
Sequencing Primer
(F):5'- AGAGTGCTCACAGGAGACTCTC -3'
(R):5'- AGTATCTCCTTACTCCAGGCTGGG -3'
|
| Posted On |
2015-02-19 |
Incidental Mutation