Mutagenetix > Incidental Mutation

Incidental Mutation 'R3745:Gm6408'

271163

Institutional Source

Beutler Lab

Gene Symbol

Gm6408

Ensembl Gene

ENSMUSG00000096344

Gene Name

predicted gene 6408

Synonyms

MMRRC Submission

040731-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.085) question?

Stock #

R3745 (G1)

Quality Score

186

Status

Not validated

Chromosome

Chromosomal Location

146418775-146421514 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 146421246 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Phenylalanine at position 292 (V292F)

Ref Sequence

ENSEMBL: ENSMUSP00000136735 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000179032]

AlphaFold

J3QNG1

Predicted Effect

probably damaging
Transcript: ENSMUST00000179032
AA Change: V292F

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000136735
Gene: ENSMUSG00000096344
AA Change: V292F

Domain	Start	End	E-Value	Type
RasGEFN	66	182	4.47e-3	SMART
low complexity region	270	292	N/A	INTRINSIC

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.2%
20x: 94.8%

Validation Efficiency

98% (44/45)

Allele List at MGI

Other mutations in this stock

Total: 44 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700012B07Rik	G	T	11: 109,684,980 (GRCm39)	C172*	probably null	Het
Acot9	G	A	X: 154,054,941 (GRCm39)		probably benign	Het
Akap10	A	G	11: 61,806,131 (GRCm39)	V199A	probably benign	Het
Aox4	C	T	1: 58,285,029 (GRCm39)	H594Y	probably damaging	Het
Arhgap35	A	T	7: 16,297,647 (GRCm39)	Y473N	probably damaging	Het
Aspn	G	A	13: 49,720,036 (GRCm39)	E351K	probably damaging	Het
Astn1	G	T	1: 158,329,630 (GRCm39)	A162S	probably damaging	Het
Atosa	T	C	9: 74,917,144 (GRCm39)	V581A	probably benign	Het
Auts2	A	G	5: 131,505,425 (GRCm39)		probably benign	Het
Cog6	A	T	3: 52,900,240 (GRCm39)	M507K	probably benign	Het
Crct1	C	A	3: 92,922,014 (GRCm39)		probably benign	Het
Cyp2d11	A	C	15: 82,276,056 (GRCm39)	I175S	probably benign	Het
Dclk1	A	G	3: 55,154,863 (GRCm39)	N98D	possibly damaging	Het
Erich5	T	A	15: 34,470,878 (GRCm39)	C36S	probably damaging	Het
F5	A	G	1: 164,014,348 (GRCm39)	I540V	possibly damaging	Het
Fam20a	A	T	11: 109,568,616 (GRCm39)	S303R	probably benign	Het
Fat3	G	A	9: 15,909,567 (GRCm39)	S2145F	probably damaging	Het
Gbp9	C	A	5: 105,253,724 (GRCm39)		probably benign	Het
Kmt2a	A	G	9: 44,742,637 (GRCm39)		probably benign	Het
Lrriq1	T	C	10: 103,006,717 (GRCm39)	D1136G	probably damaging	Het
Macrod2	C	A	2: 141,652,549 (GRCm39)	T204K	probably damaging	Het
Mlkl	A	G	8: 112,042,199 (GRCm39)		probably benign	Het
Msantd1	T	A	5: 35,080,811 (GRCm39)	V155E	possibly damaging	Het
Myo3b	A	G	2: 70,064,829 (GRCm39)		probably benign	Het
Nbn	T	A	4: 15,976,163 (GRCm39)	C375S	possibly damaging	Het
Nell2	A	C	15: 95,330,554 (GRCm39)	C231W	probably damaging	Het
Nipbl	A	G	15: 8,388,358 (GRCm39)	S421P	probably benign	Het
Npr3	A	T	15: 11,905,577 (GRCm39)	V50E	probably damaging	Het
Or4d10	A	G	19: 12,051,744 (GRCm39)	L84P	probably damaging	Het
Pclo	T	C	5: 14,728,435 (GRCm39)		probably benign	Het
Pkn3	A	G	2: 29,980,353 (GRCm39)	K785R	probably damaging	Het
Ppef2	T	A	5: 92,387,010 (GRCm39)		probably benign	Het
Prdm10	T	C	9: 31,251,703 (GRCm39)	I357T	possibly damaging	Het
Prrc2c	G	A	1: 162,525,754 (GRCm39)	T284I	unknown	Het
Psma3	T	C	12: 71,025,522 (GRCm39)	S13P	possibly damaging	Het
Ptch1	T	G	13: 63,672,773 (GRCm39)	E944A	probably benign	Het
Rpl6l	T	C	10: 110,962,226 (GRCm39)		noncoding transcript	Het
Tex11	A	G	X: 99,960,178 (GRCm39)	V522A	probably benign	Het
Thsd7b	A	G	1: 129,605,978 (GRCm39)	E573G	probably benign	Het
Tom1l1	A	G	11: 90,548,567 (GRCm39)	S259P	probably benign	Het
Trpm8	A	G	1: 88,276,049 (GRCm39)	E549G	probably benign	Het
Vmn1r66	C	T	7: 10,008,248 (GRCm39)	A262T	possibly damaging	Het
Zc3h13	T	A	14: 75,568,101 (GRCm39)	D1131E	probably benign	Het
Zfp445	A	C	9: 122,683,791 (GRCm39)	D289E	probably benign	Het

Other mutations in Gm6408

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01695:Gm6408	APN	5	146,418,939 (GRCm39)	splice site	probably benign
IGL01806:Gm6408	APN	5	146,418,892 (GRCm39)	missense	probably damaging	1.00
R0211:Gm6408	UTSW	5	146,419,870 (GRCm39)	missense	probably benign	0.04
R1763:Gm6408	UTSW	5	146,419,132 (GRCm39)	missense	probably damaging	1.00
R4393:Gm6408	UTSW	5	146,419,147 (GRCm39)	missense	probably damaging	1.00
R5586:Gm6408	UTSW	5	146,421,267 (GRCm39)	missense	possibly damaging	0.71
R5734:Gm6408	UTSW	5	146,419,192 (GRCm39)	missense	probably benign	0.07
R5999:Gm6408	UTSW	5	146,421,067 (GRCm39)	missense	possibly damaging	0.86
R6181:Gm6408	UTSW	5	146,420,582 (GRCm39)	missense	possibly damaging	0.84
R7007:Gm6408	UTSW	5	146,420,647 (GRCm39)	missense	probably damaging	1.00
R7063:Gm6408	UTSW	5	146,420,594 (GRCm39)	missense	probably benign	0.01
R7224:Gm6408	UTSW	5	146,421,180 (GRCm39)	missense	probably benign	0.10
R7734:Gm6408	UTSW	5	146,421,160 (GRCm39)	nonsense	probably null
R8676:Gm6408	UTSW	5	146,419,237 (GRCm39)	missense	probably benign	0.02
R8847:Gm6408	UTSW	5	146,420,602 (GRCm39)	missense	probably benign	0.20
R9758:Gm6408	UTSW	5	146,420,628 (GRCm39)	missense	probably benign	0.28

Predicted Primers

PCR Primer
(F):5'- TGAAAGGAGCAGTTCTGGATC -3'
(R):5'- TTGATGCAGTCCACAGGTAAAAC -3'

Sequencing Primer
(F):5'- GAGCAGTTCTGGATCCCTCTGAAC -3'
(R):5'- ACATAAGTAGATTGTACCACTGGAG -3'

Posted On

2015-03-18