Incidental Mutation 'R3790:Vmn2r1'
ID 272477
Institutional Source Beutler Lab
Gene Symbol Vmn2r1
Ensembl Gene ENSMUSG00000027824
Gene Name vomeronasal 2, receptor 1
Synonyms V2r83, EG56544
Accession Numbers
Essential gene? Probably non essential (E-score: 0.133) question?
Stock # R3790 (G1)
Quality Score 225
Status Validated
Chromosome 3
Chromosomal Location 63988968-64016905 bp(+) (GRCm39)
Type of Mutation critical splice donor site (2 bp from exon)
DNA Base Change (assembly) T to C at 63994185 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000029406 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000029406]
AlphaFold no structure available at present
Predicted Effect probably null
Transcript: ENSMUST00000029406
SMART Domains Protein: ENSMUSP00000029406
Gene: ENSMUSG00000027824

DomainStartEndE-ValueType
signal peptide 1 21 N/A INTRINSIC
Pfam:ANF_receptor 86 504 6e-92 PFAM
Pfam:NCD3G 546 599 2.4e-17 PFAM
Pfam:7tm_3 632 866 4.1e-48 PFAM
Meta Mutation Damage Score 0.9755 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.3%
  • 20x: 95.0%
Validation Efficiency 98% (47/48)
Allele List at MGI
Other mutations in this stock
Total: 45 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acat3 G A 17: 13,147,460 (GRCm39) Q186* probably null Het
Alk A G 17: 72,910,427 (GRCm39) L93P possibly damaging Het
Ankrd24 C T 10: 81,478,513 (GRCm39) probably benign Het
Anks6 A T 4: 47,049,212 (GRCm39) V231E probably damaging Het
Ap5z1 C T 5: 142,456,168 (GRCm39) S329L probably benign Het
Asic4 C A 1: 75,446,485 (GRCm39) probably benign Het
Cemip2 T G 19: 21,784,816 (GRCm39) I433S probably damaging Het
Cers4 C A 8: 4,568,285 (GRCm39) Q113K possibly damaging Het
Ces3b A T 8: 105,813,520 (GRCm39) I264F possibly damaging Het
Cops3 T C 11: 59,718,797 (GRCm39) M166V probably benign Het
Corin T C 5: 72,592,641 (GRCm39) Q184R probably benign Het
Dnah8 G A 17: 31,073,872 (GRCm39) R4514H probably damaging Het
Drosha T A 15: 12,912,623 (GRCm39) Y1080* probably null Het
Gm53 T C 11: 96,142,477 (GRCm39) noncoding transcript Het
Hmcn1 A G 1: 150,498,745 (GRCm39) S4045P probably benign Het
Kif22 A G 7: 126,628,668 (GRCm39) L480P probably damaging Het
Lepr A T 4: 101,648,111 (GRCm39) probably benign Het
Lnpk A T 2: 74,352,607 (GRCm39) S358R probably benign Het
Lnx1 A G 5: 74,789,027 (GRCm39) probably benign Het
Lrsam1 T C 2: 32,848,171 (GRCm39) E43G probably null Het
Mug1 G A 6: 121,861,587 (GRCm39) V1350I probably benign Het
Nbea T A 3: 55,912,450 (GRCm39) E1112D probably benign Het
Nepn T A 10: 52,276,626 (GRCm39) L60I probably damaging Het
Oas1e T C 5: 120,933,475 (GRCm39) E30G probably damaging Het
Or4c122 A G 2: 89,079,337 (GRCm39) F234L probably benign Het
Or4k5 A C 14: 50,386,026 (GRCm39) F102V possibly damaging Het
Pou2f1 G C 1: 165,722,538 (GRCm39) P349R probably damaging Het
Prmt8 A T 6: 127,688,110 (GRCm39) I236N probably damaging Het
Psg23 C A 7: 18,346,126 (GRCm39) V190L probably benign Het
Psg29 A G 7: 16,938,950 (GRCm39) K75E possibly damaging Het
Ranbp17 GCCTGGATACTGACC GCC 11: 33,169,203 (GRCm39) probably benign Het
Rgs4 A G 1: 169,571,991 (GRCm39) S103P probably damaging Het
Sis T C 3: 72,828,747 (GRCm39) Y1144C probably damaging Het
Slc16a14 T C 1: 84,907,001 (GRCm39) probably benign Het
Snrnp35 T A 5: 124,628,248 (GRCm39) D20E probably damaging Het
Syce1l C A 8: 114,369,897 (GRCm39) A10E possibly damaging Het
Tdp1 A G 12: 99,858,011 (GRCm39) probably benign Het
Tmem212 T C 3: 27,940,594 (GRCm39) probably null Het
Tomm20l C T 12: 71,158,516 (GRCm39) A58V possibly damaging Het
Ttn C A 2: 76,568,471 (GRCm39) C27474F probably damaging Het
Ttn A G 2: 76,804,552 (GRCm39) V240A probably benign Het
Vars1 A G 17: 35,218,310 (GRCm39) V48A probably benign Het
Washc2 A G 6: 116,224,933 (GRCm39) probably benign Het
Zfp943 A G 17: 22,211,403 (GRCm39) D163G possibly damaging Het
Zmym5 T C 14: 57,031,230 (GRCm39) Y626C probably damaging Het
Other mutations in Vmn2r1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00233:Vmn2r1 APN 3 64,012,389 (GRCm39) nonsense probably null
IGL00335:Vmn2r1 APN 3 64,012,809 (GRCm39) missense probably damaging 0.96
IGL01509:Vmn2r1 APN 3 64,010,466 (GRCm39) missense probably benign 0.03
IGL01641:Vmn2r1 APN 3 64,011,924 (GRCm39) missense probably benign 0.19
IGL01656:Vmn2r1 APN 3 63,989,274 (GRCm39) missense probably damaging 0.96
IGL01927:Vmn2r1 APN 3 63,989,105 (GRCm39) missense probably benign 0.01
IGL02093:Vmn2r1 APN 3 64,012,130 (GRCm39) missense probably benign
IGL02146:Vmn2r1 APN 3 64,012,104 (GRCm39) missense probably benign 0.39
IGL02186:Vmn2r1 APN 3 63,989,138 (GRCm39) missense probably benign 0.01
IGL02320:Vmn2r1 APN 3 63,989,180 (GRCm39) missense possibly damaging 0.61
IGL02423:Vmn2r1 APN 3 63,997,665 (GRCm39) missense probably benign 0.00
IGL02709:Vmn2r1 APN 3 64,012,355 (GRCm39) missense probably benign 0.24
R0034:Vmn2r1 UTSW 3 63,997,435 (GRCm39) missense probably damaging 1.00
R0064:Vmn2r1 UTSW 3 64,012,209 (GRCm39) missense possibly damaging 0.76
R0152:Vmn2r1 UTSW 3 63,989,240 (GRCm39) missense possibly damaging 0.92
R0305:Vmn2r1 UTSW 3 63,997,087 (GRCm39) missense probably damaging 1.00
R0314:Vmn2r1 UTSW 3 63,993,980 (GRCm39) missense probably damaging 1.00
R0317:Vmn2r1 UTSW 3 63,989,240 (GRCm39) missense possibly damaging 0.92
R0465:Vmn2r1 UTSW 3 63,989,180 (GRCm39) missense possibly damaging 0.61
R1144:Vmn2r1 UTSW 3 63,997,541 (GRCm39) missense probably damaging 1.00
R1163:Vmn2r1 UTSW 3 63,994,046 (GRCm39) missense probably benign 0.03
R1448:Vmn2r1 UTSW 3 64,008,734 (GRCm39) missense probably damaging 1.00
R1491:Vmn2r1 UTSW 3 63,997,034 (GRCm39) missense probably damaging 1.00
R1543:Vmn2r1 UTSW 3 63,996,994 (GRCm39) missense probably damaging 1.00
R1611:Vmn2r1 UTSW 3 64,011,958 (GRCm39) nonsense probably null
R1676:Vmn2r1 UTSW 3 63,997,603 (GRCm39) nonsense probably null
R1727:Vmn2r1 UTSW 3 63,989,163 (GRCm39) missense probably benign
R1851:Vmn2r1 UTSW 3 64,008,926 (GRCm39) missense probably benign 0.32
R3080:Vmn2r1 UTSW 3 63,997,205 (GRCm39) missense probably damaging 1.00
R4111:Vmn2r1 UTSW 3 63,997,176 (GRCm39) missense probably benign 0.23
R4689:Vmn2r1 UTSW 3 64,012,074 (GRCm39) missense possibly damaging 0.94
R4747:Vmn2r1 UTSW 3 63,989,267 (GRCm39) missense probably benign 0.00
R4970:Vmn2r1 UTSW 3 63,997,544 (GRCm39) missense possibly damaging 0.81
R5033:Vmn2r1 UTSW 3 64,012,501 (GRCm39) missense probably damaging 1.00
R5086:Vmn2r1 UTSW 3 63,997,418 (GRCm39) missense probably benign 0.00
R5112:Vmn2r1 UTSW 3 63,997,544 (GRCm39) missense possibly damaging 0.81
R5385:Vmn2r1 UTSW 3 64,008,819 (GRCm39) missense possibly damaging 0.89
R5629:Vmn2r1 UTSW 3 64,012,538 (GRCm39) missense possibly damaging 0.87
R5762:Vmn2r1 UTSW 3 63,997,474 (GRCm39) missense probably benign 0.24
R5867:Vmn2r1 UTSW 3 64,011,990 (GRCm39) missense probably benign
R5893:Vmn2r1 UTSW 3 63,993,974 (GRCm39) missense probably damaging 1.00
R6037:Vmn2r1 UTSW 3 63,989,150 (GRCm39) missense probably benign 0.00
R6037:Vmn2r1 UTSW 3 63,989,150 (GRCm39) missense probably benign 0.00
R6290:Vmn2r1 UTSW 3 64,012,873 (GRCm39) missense probably benign 0.02
R6443:Vmn2r1 UTSW 3 64,012,374 (GRCm39) missense possibly damaging 0.78
R6464:Vmn2r1 UTSW 3 64,008,766 (GRCm39) missense probably benign
R6826:Vmn2r1 UTSW 3 64,012,567 (GRCm39) nonsense probably null
R6874:Vmn2r1 UTSW 3 64,012,376 (GRCm39) missense probably damaging 1.00
R6882:Vmn2r1 UTSW 3 63,997,529 (GRCm39) missense possibly damaging 0.64
R6983:Vmn2r1 UTSW 3 63,989,118 (GRCm39) missense probably benign
R7010:Vmn2r1 UTSW 3 64,012,146 (GRCm39) missense probably benign 0.19
R7144:Vmn2r1 UTSW 3 63,997,362 (GRCm39) missense probably damaging 1.00
R7341:Vmn2r1 UTSW 3 64,012,877 (GRCm39) makesense probably null
R7510:Vmn2r1 UTSW 3 63,993,922 (GRCm39) missense probably damaging 1.00
R7557:Vmn2r1 UTSW 3 63,997,475 (GRCm39) missense probably damaging 0.99
R7895:Vmn2r1 UTSW 3 63,997,130 (GRCm39) missense possibly damaging 0.90
R8108:Vmn2r1 UTSW 3 64,010,471 (GRCm39) missense probably damaging 0.98
R8209:Vmn2r1 UTSW 3 63,997,199 (GRCm39) missense possibly damaging 0.64
R8365:Vmn2r1 UTSW 3 63,994,034 (GRCm39) missense possibly damaging 0.80
R8514:Vmn2r1 UTSW 3 63,993,942 (GRCm39) missense probably benign 0.11
R8554:Vmn2r1 UTSW 3 63,997,334 (GRCm39) missense probably damaging 0.98
R8980:Vmn2r1 UTSW 3 64,010,501 (GRCm39) missense
R9140:Vmn2r1 UTSW 3 63,997,465 (GRCm39) missense probably benign 0.05
R9239:Vmn2r1 UTSW 3 64,011,959 (GRCm39) missense probably damaging 0.99
R9441:Vmn2r1 UTSW 3 64,012,674 (GRCm39) missense probably damaging 1.00
R9549:Vmn2r1 UTSW 3 63,997,493 (GRCm39) missense probably benign 0.17
R9771:Vmn2r1 UTSW 3 63,997,559 (GRCm39) missense possibly damaging 0.79
X0065:Vmn2r1 UTSW 3 63,997,678 (GRCm39) nonsense probably null
Predicted Primers PCR Primer
(F):5'- GGCTACCAGATCTTTGATTCCTG -3'
(R):5'- TGCAGTGTCACTAAGAACACC -3'

Sequencing Primer
(F):5'- GATTCCTGCTATACCATCTCCAAAG -3'
(R):5'- AGCCTAGTTGTCTGAGAACTAGCTC -3'
Posted On 2015-03-25