Incidental Mutation 'R3796:Slc27a6'
ID 272780
Institutional Source Beutler Lab
Gene Symbol Slc27a6
Ensembl Gene ENSMUSG00000024600
Gene Name solute carrier family 27 (fatty acid transporter), member 6
Synonyms FATP6, 4732438L20Rik
MMRRC Submission 040757-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.057) question?
Stock # R3796 (G1)
Quality Score 225
Status Validated
Chromosome 18
Chromosomal Location 58689329-58745845 bp(+) (GRCm39)
Type of Mutation splice site
DNA Base Change (assembly) T to C at 58731823 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000025500 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000025500]
AlphaFold E9Q9W4
Predicted Effect probably benign
Transcript: ENSMUST00000025500
SMART Domains Protein: ENSMUSP00000025500
Gene: ENSMUSG00000024600

DomainStartEndE-ValueType
low complexity region 13 23 N/A INTRINSIC
Pfam:AMP-binding 60 487 5.3e-71 PFAM
Pfam:AMP-binding_C 495 571 2.6e-8 PFAM
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.2%
  • 20x: 94.9%
Validation Efficiency 100% (40/40)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the fatty acid transport protein family (FATP). FATPs are involved in the uptake of long-chain fatty acids and have unique expression patterns. Alternatively spliced transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 35 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adamts17 A G 7: 66,489,662 (GRCm39) probably null Het
Alpk3 C A 7: 80,742,501 (GRCm39) P773T probably benign Het
Alppl2 A G 1: 87,016,076 (GRCm39) probably null Het
Armh3 A G 19: 45,910,049 (GRCm39) probably benign Het
Basp1 C A 15: 25,364,398 (GRCm39) probably benign Het
Clec14a G A 12: 58,314,695 (GRCm39) A309V probably benign Het
Clk2 A G 3: 89,082,996 (GRCm39) N424S probably benign Het
Cops7a C T 6: 124,936,795 (GRCm39) R252H probably damaging Het
Csmd2 C T 4: 128,411,388 (GRCm39) P2469S probably benign Het
Cwf19l1 A G 19: 44,103,006 (GRCm39) V403A probably damaging Het
Dnajc16 G T 4: 141,495,048 (GRCm39) D521E probably benign Het
Dnm2 T C 9: 21,416,783 (GRCm39) V772A probably benign Het
Dst G T 1: 34,220,996 (GRCm39) V2267F probably benign Het
Eif3d A G 15: 77,852,769 (GRCm39) F4S probably damaging Het
Fgfr1 G A 8: 26,062,453 (GRCm39) D663N probably damaging Het
Hmcn1 A G 1: 150,462,169 (GRCm39) Y5170H probably damaging Het
Kcna2 T A 3: 107,012,906 (GRCm39) L496I probably benign Het
Krt8 T C 15: 101,907,877 (GRCm39) I233V probably benign Het
Mfap1b A G 2: 121,304,386 (GRCm39) V3A probably benign Het
Phrf1 C T 7: 140,839,831 (GRCm39) R243* probably null Het
Plbd2 A T 5: 120,630,933 (GRCm39) I224N probably damaging Het
Rab19 T C 6: 39,360,975 (GRCm39) V41A probably benign Het
Rrm1 T A 7: 102,114,910 (GRCm39) probably null Het
Sacs T C 14: 61,443,570 (GRCm39) V1872A possibly damaging Het
Setd2 T C 9: 110,378,639 (GRCm39) V818A probably benign Het
Shprh C T 10: 11,054,501 (GRCm39) L1037F possibly damaging Het
Slc24a3 A G 2: 145,458,601 (GRCm39) D527G probably damaging Het
Slc35g3 A G 11: 69,651,743 (GRCm39) F103L probably benign Het
Slc5a1 A G 5: 33,309,996 (GRCm39) D408G probably damaging Het
Spag6l A T 16: 16,580,916 (GRCm39) I477N probably damaging Het
Srgap1 A G 10: 121,883,037 (GRCm39) V21A probably benign Het
Trim7 A G 11: 48,736,497 (GRCm39) probably null Het
Trpa1 T C 1: 14,963,488 (GRCm39) N578S possibly damaging Het
Xdh T C 17: 74,214,653 (GRCm39) E764G probably damaging Het
Zfp518a G T 19: 40,903,754 (GRCm39) V1228F probably damaging Het
Other mutations in Slc27a6
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01103:Slc27a6 APN 18 58,689,836 (GRCm39) missense probably benign
IGL01419:Slc27a6 APN 18 58,742,281 (GRCm39) missense probably benign 0.00
IGL01638:Slc27a6 APN 18 58,740,885 (GRCm39) missense probably damaging 1.00
IGL02067:Slc27a6 APN 18 58,745,263 (GRCm39) missense probably benign 0.00
IGL02612:Slc27a6 APN 18 58,689,977 (GRCm39) missense probably benign 0.00
IGL03118:Slc27a6 APN 18 58,689,815 (GRCm39) missense probably benign 0.00
R0096:Slc27a6 UTSW 18 58,731,829 (GRCm39) splice site probably benign
R0096:Slc27a6 UTSW 18 58,731,829 (GRCm39) splice site probably benign
R0255:Slc27a6 UTSW 18 58,742,937 (GRCm39) missense possibly damaging 0.69
R0449:Slc27a6 UTSW 18 58,742,237 (GRCm39) splice site probably null
R0599:Slc27a6 UTSW 18 58,689,885 (GRCm39) missense probably damaging 1.00
R0711:Slc27a6 UTSW 18 58,731,829 (GRCm39) splice site probably benign
R1082:Slc27a6 UTSW 18 58,689,632 (GRCm39) missense probably damaging 0.97
R1560:Slc27a6 UTSW 18 58,712,904 (GRCm39) nonsense probably null
R1942:Slc27a6 UTSW 18 58,689,870 (GRCm39) missense probably damaging 0.99
R2424:Slc27a6 UTSW 18 58,738,189 (GRCm39) missense probably benign 0.20
R4718:Slc27a6 UTSW 18 58,738,138 (GRCm39) missense probably benign 0.03
R4803:Slc27a6 UTSW 18 58,705,105 (GRCm39) missense possibly damaging 0.59
R5714:Slc27a6 UTSW 18 58,731,625 (GRCm39) missense probably damaging 0.97
R5773:Slc27a6 UTSW 18 58,715,245 (GRCm39) missense probably damaging 1.00
R5996:Slc27a6 UTSW 18 58,745,306 (GRCm39) missense possibly damaging 0.89
R6049:Slc27a6 UTSW 18 58,731,732 (GRCm39) missense probably damaging 1.00
R6441:Slc27a6 UTSW 18 58,705,130 (GRCm39) missense probably benign 0.06
R6701:Slc27a6 UTSW 18 58,712,947 (GRCm39) missense probably benign 0.01
R6703:Slc27a6 UTSW 18 58,742,911 (GRCm39) missense probably benign 0.19
R6809:Slc27a6 UTSW 18 58,738,126 (GRCm39) missense probably benign 0.00
R7514:Slc27a6 UTSW 18 58,745,293 (GRCm39) nonsense probably null
R7536:Slc27a6 UTSW 18 58,689,698 (GRCm39) missense probably damaging 1.00
R7615:Slc27a6 UTSW 18 58,742,255 (GRCm39) missense probably damaging 1.00
R7808:Slc27a6 UTSW 18 58,742,267 (GRCm39) missense probably damaging 1.00
R8279:Slc27a6 UTSW 18 58,705,251 (GRCm39) missense probably benign 0.00
R8842:Slc27a6 UTSW 18 58,712,888 (GRCm39) missense probably benign 0.07
R8888:Slc27a6 UTSW 18 58,715,306 (GRCm39) missense probably damaging 1.00
R8895:Slc27a6 UTSW 18 58,715,306 (GRCm39) missense probably damaging 1.00
R9092:Slc27a6 UTSW 18 58,742,330 (GRCm39) missense probably benign
R9103:Slc27a6 UTSW 18 58,705,268 (GRCm39) missense probably damaging 0.99
R9153:Slc27a6 UTSW 18 58,731,805 (GRCm39) missense probably benign 0.25
R9306:Slc27a6 UTSW 18 58,742,953 (GRCm39) missense possibly damaging 0.50
R9620:Slc27a6 UTSW 18 58,742,887 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- CAGTTGGAAACGGTTTGAGC -3'
(R):5'- ACCATGCAGTCAGTCATCC -3'

Sequencing Primer
(F):5'- AAACGGTTTGAGCAGTGATGTG -3'
(R):5'- TGCAGTCATCCCCATGCAG -3'
Posted On 2015-03-25