Mutagenetix > Incidental Mutation

Incidental Mutation 'R3798:Xdh'

272859

Institutional Source

Beutler Lab

Gene Symbol

Xdh

Ensembl Gene

ENSMUSG00000024066

Gene Name

xanthine dehydrogenase

Synonyms

xanthine oxidase, XO, Xor, Xox1, Xox-1

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.483) question?

Stock #

R3798 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

73883908-73950182 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 73907658 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 764 (E764G)

Ref Sequence

ENSEMBL: ENSMUSP00000024866 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000024866]

AlphaFold

Q00519

Predicted Effect

probably damaging
Transcript: ENSMUST00000024866
AA Change: E764G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000024866
Gene: ENSMUSG00000024066
AA Change: E764G

Domain	Start	End	E-Value	Type
Pfam:Fer2	11	81	5e-12	PFAM
Pfam:Fer2_2	90	163	4.1e-31	PFAM
low complexity region	169	182	N/A	INTRINSIC
Pfam:FAD_binding_5	234	414	4.9e-47	PFAM
CO_deh_flav_C	421	525	1.16e-24	SMART
Ald_Xan_dh_C	590	696	1.23e-46	SMART
Pfam:Ald_Xan_dh_C2	704	1239	1e-200	PFAM

Meta Mutation Damage Score

0.6295

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.4%

Validation Efficiency

MGI Phenotype

FUNCTION: This gene encodes a member of the xanthine dehydrogenase protein family. The encoded protein has been identified as a moonlighting protein based on its ability to perform mechanistically distinct functions. The encoded protein exists as two distinct enzymatic forms, either as xanthine dehydrogenase, or as xanthine oxidase, and functions in purine degradation. Additional studies also suggest a role in adipogenesis, and a function as a structural protein in milk fat droplets in the lactating mammary gland. [provided by RefSeq, Jan 2014]
PHENOTYPE: Homozygotes for a null allele are small and die prematurely while heterozygous females show a lactation defect. Most homozygotes for another null allele die within the first month of renal failure associated with uric acid depletion, renal tubular damage, inflammation, fibrosis and oxidative stress. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 31 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acadsb	T	A	7: 131,431,965 (GRCm38)	V237E	probably damaging	Het
Adgrf3	T	C	5: 30,196,823 (GRCm38)	I736V	possibly damaging	Het
Alpk3	C	A	7: 81,092,753 (GRCm38)	P773T	probably benign	Het
Basp1	C	A	15: 25,364,312 (GRCm38)		probably benign	Het
Bbs9	T	C	9: 22,638,769 (GRCm38)	S21P	probably damaging	Het
Btbd16	A	G	7: 130,777,140 (GRCm38)	N5D	probably benign	Het
Csmd2	C	T	4: 128,517,595 (GRCm38)	P2469S	probably benign	Het
Cyld	T	C	8: 88,734,930 (GRCm38)	L662P	probably damaging	Het
Eif2ak4	C	T	2: 118,474,083 (GRCm38)	R1530C	probably damaging	Het
Fam43b	G	C	4: 138,395,098 (GRCm38)	R304G	probably benign	Het
Ip6k3	T	C	17: 27,145,106 (GRCm38)	I323V	probably benign	Het
Itpr1	T	C	6: 108,381,270 (GRCm38)	L599P	probably damaging	Het
Lancl1	G	A	1: 67,034,144 (GRCm38)	T60I	probably damaging	Het
Lmf1	G	A	17: 25,654,471 (GRCm38)	V317M	probably damaging	Het
Lrrc8d	T	A	5: 105,812,489 (GRCm38)	I255N	probably benign	Het
Ndst1	A	G	18: 60,713,166 (GRCm38)	F24L	possibly damaging	Het
Notch1	A	T	2: 26,478,618 (GRCm38)	V553E	probably benign	Het
Nsd3	T	A	8: 25,698,845 (GRCm38)	W69R	probably damaging	Het
Olfr117	T	A	17: 37,660,106 (GRCm38)	I76F	probably damaging	Het
Pcm1	T	C	8: 41,258,014 (GRCm38)	I107T	possibly damaging	Het
Pcnx3	G	A	19: 5,678,668 (GRCm38)	Q422*	probably null	Het
Phrf1	C	T	7: 141,259,918 (GRCm38)	R243*	probably null	Het
Ptbp3	T	C	4: 59,546,166 (GRCm38)	I9V	probably benign	Het
Sacs	T	C	14: 61,206,121 (GRCm38)	V1872A	possibly damaging	Het
Slc35g3	A	G	11: 69,760,917 (GRCm38)	F103L	probably benign	Het
Slx4ip	T	A	2: 137,067,623 (GRCm38)	D109E	probably benign	Het
Tas2r118	T	C	6: 23,969,823 (GRCm38)	K80E	possibly damaging	Het
Ttn	T	C	2: 76,894,743 (GRCm38)		probably benign	Het
Vmn2r72	T	C	7: 85,738,077 (GRCm38)	S760G	probably benign	Het
Vmn2r79	A	G	7: 87,002,194 (GRCm38)	Y267C	possibly damaging	Het
Wdr90	T	C	17: 25,850,498 (GRCm38)	S1194G	probably benign	Het

Other mutations in Xdh

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00493:Xdh	APN	17	73,923,106 (GRCm38)	missense	possibly damaging	0.58
IGL00556:Xdh	APN	17	73,884,435 (GRCm38)	makesense	probably null
IGL01524:Xdh	APN	17	73,923,137 (GRCm38)	critical splice acceptor site	probably null
IGL01604:Xdh	APN	17	73,909,337 (GRCm38)	missense	probably benign	0.02
IGL01625:Xdh	APN	17	73,916,786 (GRCm38)	critical splice donor site	probably null
IGL01778:Xdh	APN	17	73,900,280 (GRCm38)	missense	probably benign	0.00
IGL01804:Xdh	APN	17	73,892,759 (GRCm38)	missense	probably damaging	1.00
IGL01825:Xdh	APN	17	73,891,245 (GRCm38)	missense	probably damaging	1.00
IGL01929:Xdh	APN	17	73,934,855 (GRCm38)	missense	probably damaging	1.00
IGL02068:Xdh	APN	17	73,913,950 (GRCm38)	missense	probably damaging	1.00
IGL02079:Xdh	APN	17	73,891,277 (GRCm38)	missense	probably damaging	1.00
IGL02210:Xdh	APN	17	73,943,895 (GRCm38)	missense	probably benign	0.00
IGL02261:Xdh	APN	17	73,913,965 (GRCm38)	missense	possibly damaging	0.81
IGL02365:Xdh	APN	17	73,943,890 (GRCm38)	missense	probably benign	0.14
IGL02424:Xdh	APN	17	73,926,570 (GRCm38)	missense	probably benign	0.00
IGL02491:Xdh	APN	17	73,886,464 (GRCm38)	missense	probably damaging	0.99
IGL02525:Xdh	APN	17	73,924,995 (GRCm38)	missense	possibly damaging	0.91
IGL02578:Xdh	APN	17	73,906,246 (GRCm38)	missense	probably damaging	1.00
IGL02793:Xdh	APN	17	73,900,581 (GRCm38)	missense	probably damaging	1.00
IGL02939:Xdh	APN	17	73,943,845 (GRCm38)	critical splice donor site	probably null
IGL03327:Xdh	APN	17	73,916,792 (GRCm38)	missense	probably benign
IGL03345:Xdh	APN	17	73,906,032 (GRCm38)	missense	probably damaging	0.98
IGL03353:Xdh	APN	17	73,895,786 (GRCm38)	missense	possibly damaging	0.65
inky	UTSW	17	73,921,351 (GRCm38)	missense	probably damaging	1.00
nucleus	UTSW	17	73,899,012 (GRCm38)	nonsense	probably null
squidgame	UTSW	17	73,939,836 (GRCm38)	missense	probably benign
R0018:Xdh	UTSW	17	73,925,025 (GRCm38)	missense	probably benign	0.00
R0018:Xdh	UTSW	17	73,925,025 (GRCm38)	missense	probably benign	0.00
R0033:Xdh	UTSW	17	73,907,632 (GRCm38)	missense	probably benign	0.06
R0079:Xdh	UTSW	17	73,891,218 (GRCm38)	missense	probably damaging	1.00
R0086:Xdh	UTSW	17	73,884,438 (GRCm38)	missense	probably benign
R0319:Xdh	UTSW	17	73,906,101 (GRCm38)	splice site	probably benign
R0336:Xdh	UTSW	17	73,922,463 (GRCm38)	missense	possibly damaging	0.91
R0389:Xdh	UTSW	17	73,898,362 (GRCm38)	missense	probably damaging	1.00
R0684:Xdh	UTSW	17	73,943,891 (GRCm38)	missense	probably damaging	0.97
R0930:Xdh	UTSW	17	73,923,082 (GRCm38)	missense	probably benign	0.00
R1073:Xdh	UTSW	17	73,939,836 (GRCm38)	missense	probably benign
R1114:Xdh	UTSW	17	73,941,149 (GRCm38)	splice site	probably benign
R1201:Xdh	UTSW	17	73,918,418 (GRCm38)	missense	probably benign	0.05
R1230:Xdh	UTSW	17	73,891,256 (GRCm38)	missense	probably damaging	1.00
R1351:Xdh	UTSW	17	73,923,078 (GRCm38)	missense	probably benign	0.02
R1470:Xdh	UTSW	17	73,891,112 (GRCm38)	missense	probably damaging	1.00
R1470:Xdh	UTSW	17	73,891,112 (GRCm38)	missense	probably damaging	1.00
R1485:Xdh	UTSW	17	73,914,019 (GRCm38)	nonsense	probably null
R1548:Xdh	UTSW	17	73,913,901 (GRCm38)	missense	probably damaging	0.98
R1637:Xdh	UTSW	17	73,900,578 (GRCm38)	missense	probably benign
R1641:Xdh	UTSW	17	73,926,552 (GRCm38)	missense	probably benign
R1758:Xdh	UTSW	17	73,910,209 (GRCm38)	missense	probably damaging	1.00
R1951:Xdh	UTSW	17	73,907,658 (GRCm38)	missense	probably damaging	1.00
R1969:Xdh	UTSW	17	73,892,751 (GRCm38)	missense	possibly damaging	0.55
R2024:Xdh	UTSW	17	73,921,305 (GRCm38)	missense	possibly damaging	0.92
R2080:Xdh	UTSW	17	73,909,325 (GRCm38)	missense	probably damaging	1.00
R2157:Xdh	UTSW	17	73,922,537 (GRCm38)	missense	probably damaging	1.00
R2300:Xdh	UTSW	17	73,891,265 (GRCm38)	missense	probably damaging	1.00
R3783:Xdh	UTSW	17	73,893,595 (GRCm38)	splice site	probably benign
R3796:Xdh	UTSW	17	73,907,658 (GRCm38)	missense	probably damaging	1.00
R3797:Xdh	UTSW	17	73,907,658 (GRCm38)	missense	probably damaging	1.00
R3799:Xdh	UTSW	17	73,907,658 (GRCm38)	missense	probably damaging	1.00
R3819:Xdh	UTSW	17	73,906,725 (GRCm38)	missense	probably benign	0.35
R4085:Xdh	UTSW	17	73,916,879 (GRCm38)	missense	probably benign	0.35
R4240:Xdh	UTSW	17	73,895,795 (GRCm38)	missense	possibly damaging	0.72
R4356:Xdh	UTSW	17	73,915,690 (GRCm38)	missense	probably benign	0.01
R4522:Xdh	UTSW	17	73,898,344 (GRCm38)	missense	probably damaging	1.00
R4523:Xdh	UTSW	17	73,898,344 (GRCm38)	missense	probably damaging	1.00
R4524:Xdh	UTSW	17	73,898,344 (GRCm38)	missense	probably damaging	1.00
R4600:Xdh	UTSW	17	73,910,200 (GRCm38)	missense	probably benign	0.19
R4617:Xdh	UTSW	17	73,918,394 (GRCm38)	missense	probably damaging	0.99
R4756:Xdh	UTSW	17	73,886,386 (GRCm38)	missense	probably benign	0.24
R4761:Xdh	UTSW	17	73,910,267 (GRCm38)	missense	possibly damaging	0.91
R4815:Xdh	UTSW	17	73,906,215 (GRCm38)	missense	probably damaging	1.00
R4850:Xdh	UTSW	17	73,898,335 (GRCm38)	missense	probably damaging	1.00
R4896:Xdh	UTSW	17	73,910,243 (GRCm38)	missense	probably damaging	0.96
R4897:Xdh	UTSW	17	73,900,708 (GRCm38)	missense	probably benign
R4923:Xdh	UTSW	17	73,924,936 (GRCm38)	missense	possibly damaging	0.72
R4977:Xdh	UTSW	17	73,898,970 (GRCm38)	missense	probably benign	0.05
R5030:Xdh	UTSW	17	73,891,293 (GRCm38)	missense	probably damaging	1.00
R5185:Xdh	UTSW	17	73,925,011 (GRCm38)	missense	probably damaging	1.00
R5347:Xdh	UTSW	17	73,925,032 (GRCm38)	missense	probably benign
R5556:Xdh	UTSW	17	73,897,764 (GRCm38)	missense	probably benign	0.21
R5566:Xdh	UTSW	17	73,893,622 (GRCm38)	missense	probably damaging	1.00
R5568:Xdh	UTSW	17	73,943,885 (GRCm38)	missense	possibly damaging	0.90
R5635:Xdh	UTSW	17	73,913,875 (GRCm38)	missense	possibly damaging	0.92
R5662:Xdh	UTSW	17	73,941,115 (GRCm38)	missense	probably damaging	0.99
R5955:Xdh	UTSW	17	73,898,320 (GRCm38)	missense	probably damaging	1.00
R6058:Xdh	UTSW	17	73,906,269 (GRCm38)	missense	probably damaging	1.00
R6061:Xdh	UTSW	17	73,921,347 (GRCm38)	missense	probably damaging	1.00
R6412:Xdh	UTSW	17	73,935,907 (GRCm38)	missense	probably benign	0.09
R6526:Xdh	UTSW	17	73,900,551 (GRCm38)	missense	probably damaging	0.97
R6558:Xdh	UTSW	17	73,893,713 (GRCm38)	missense	possibly damaging	0.95
R6843:Xdh	UTSW	17	73,923,130 (GRCm38)	missense	probably damaging	1.00
R6932:Xdh	UTSW	17	73,922,562 (GRCm38)	missense	probably damaging	0.99
R7028:Xdh	UTSW	17	73,943,873 (GRCm38)	missense	probably damaging	0.99
R7418:Xdh	UTSW	17	73,913,965 (GRCm38)	missense	possibly damaging	0.81
R7503:Xdh	UTSW	17	73,926,210 (GRCm38)	missense	probably damaging	1.00
R7653:Xdh	UTSW	17	73,897,045 (GRCm38)	missense	probably benign	0.10
R7763:Xdh	UTSW	17	73,934,834 (GRCm38)	missense	possibly damaging	0.69
R7768:Xdh	UTSW	17	73,939,836 (GRCm38)	missense	probably benign
R7904:Xdh	UTSW	17	73,922,472 (GRCm38)	missense	probably benign	0.09
R8010:Xdh	UTSW	17	73,909,317 (GRCm38)	nonsense	probably null
R8067:Xdh	UTSW	17	73,900,657 (GRCm38)	missense	probably benign	0.01
R8238:Xdh	UTSW	17	73,886,417 (GRCm38)	missense	probably benign
R8253:Xdh	UTSW	17	73,918,382 (GRCm38)	missense	possibly damaging	0.94
R8346:Xdh	UTSW	17	73,913,943 (GRCm38)	missense	probably damaging	1.00
R8350:Xdh	UTSW	17	73,934,842 (GRCm38)	missense	probably damaging	1.00
R8381:Xdh	UTSW	17	73,912,461 (GRCm38)	missense	probably benign
R8427:Xdh	UTSW	17	73,935,931 (GRCm38)	missense	probably damaging	1.00
R8465:Xdh	UTSW	17	73,899,012 (GRCm38)	nonsense	probably null
R8478:Xdh	UTSW	17	73,906,058 (GRCm38)	missense	probably benign	0.00
R8680:Xdh	UTSW	17	73,922,505 (GRCm38)	missense	probably benign
R8802:Xdh	UTSW	17	73,918,410 (GRCm38)	missense	probably benign	0.00
R8984:Xdh	UTSW	17	73,921,351 (GRCm38)	missense	probably damaging	1.00
R8985:Xdh	UTSW	17	73,921,351 (GRCm38)	missense	probably damaging	1.00
R8995:Xdh	UTSW	17	73,898,374 (GRCm38)	missense	probably damaging	1.00
R9035:Xdh	UTSW	17	73,910,227 (GRCm38)	missense	probably benign
R9149:Xdh	UTSW	17	73,915,693 (GRCm38)	missense	probably benign
R9181:Xdh	UTSW	17	73,925,011 (GRCm38)	missense	probably damaging	1.00
R9357:Xdh	UTSW	17	73,926,546 (GRCm38)	critical splice donor site	probably null
R9357:Xdh	UTSW	17	73,907,716 (GRCm38)	missense	probably damaging	0.97
R9609:Xdh	UTSW	17	73,924,995 (GRCm38)	missense	possibly damaging	0.91
R9803:Xdh	UTSW	17	73,922,460 (GRCm38)	missense	probably benign
X0019:Xdh	UTSW	17	73,918,454 (GRCm38)	missense	probably damaging	1.00
Z1088:Xdh	UTSW	17	73,886,428 (GRCm38)	missense	probably benign
Z1176:Xdh	UTSW	17	73,923,042 (GRCm38)	critical splice donor site	probably null
Z1177:Xdh	UTSW	17	73,897,695 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ACAGGCTCTGATTCCAAGAC -3'
(R):5'- TGAACAACAAGGGGTTCTTTGG -3'

Sequencing Primer
(F):5'- GGCTCTGATTCCAAGACTAATACTC -3'
(R):5'- CAGTTGAAGTTCCCAGATGTGTCAAG -3'

Posted On

2015-03-25