Mutagenetix > Incidental Mutation

Incidental Mutation 'R3767:Klf3'

273048

Institutional Source

Beutler Lab

Gene Symbol

Klf3

Ensembl Gene

ENSMUSG00000029178

Gene Name

Kruppel-like transcription factor 3 (basic)

Synonyms

Tef-2, BKLF, 9930027G08Rik, Bklf

MMRRC Submission

040744-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.275) question?

Stock #

R3767 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

64960864-64990246 bp(+) (GRCm39)

Type of Mutation

splice site (4974 bp from exon)

DNA Base Change (assembly)

A to G at 64984560 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000142369 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000165536] [ENSMUST00000166409] [ENSMUST00000197879] [ENSMUST00000198946] [ENSMUST00000200384]

AlphaFold

Q60980

Predicted Effect

possibly damaging
Transcript: ENSMUST00000165536
AA Change: N267S

PolyPhen 2 Score 0.707 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000129363
Gene: ENSMUSG00000029178
AA Change: N267S

Domain	Start	End	E-Value	Type
low complexity region	70	81	N/A	INTRINSIC
low complexity region	91	111	N/A	INTRINSIC
low complexity region	138	153	N/A	INTRINSIC
ZnF_C2H2	259	283	6.32e-3	SMART
ZnF_C2H2	289	313	1.6e-4	SMART
ZnF_C2H2	319	341	8.47e-4	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000166409
AA Change: N267S

PolyPhen 2 Score 0.707 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000128429
Gene: ENSMUSG00000029178
AA Change: N267S

Domain	Start	End	E-Value	Type
low complexity region	70	81	N/A	INTRINSIC
low complexity region	91	111	N/A	INTRINSIC
low complexity region	138	153	N/A	INTRINSIC
ZnF_C2H2	259	283	6.32e-3	SMART
ZnF_C2H2	289	313	1.6e-4	SMART
ZnF_C2H2	319	341	8.47e-4	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000196764

Predicted Effect

probably null
Transcript: ENSMUST00000197879

SMART Domains

Protein: ENSMUSP00000142369
Gene: ENSMUSG00000029178

Domain	Start	End	E-Value	Type
low complexity region	70	81	N/A	INTRINSIC
low complexity region	91	111	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000198946
AA Change: N61S

PolyPhen 2 Score 0.168 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000142651
Gene: ENSMUSG00000029178
AA Change: N61S

Domain	Start	End	E-Value	Type
ZnF_C2H2	53	77	2.7e-5	SMART
ZnF_C2H2	83	107	6.9e-7	SMART
ZnF_C2H2	113	135	3.7e-6	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000200384

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000200587

Meta Mutation Damage Score

0.3169

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.0%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Homozygous null mice display reduced viability, body size and white adipose tissue. Mice homozygous for a gene trap allele exhibit cardiac defects, reduced body size and abnormal red blood cells. Mice heterozygous for an ENU-induced allele exhibit lethality with heart defects. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adipoq	T	A	16: 22,975,938 (GRCm39)	V134E	possibly damaging	Het
Agmat	A	G	4: 141,483,273 (GRCm39)	T236A	probably benign	Het
Anxa9	T	C	3: 95,208,425 (GRCm39)	N197S	probably benign	Het
Arhgap23	A	T	11: 97,366,932 (GRCm39)	D1071V	probably damaging	Het
Axdnd1	G	A	1: 156,208,428 (GRCm39)	T470M	probably damaging	Het
C3	C	T	17: 57,512,303 (GRCm39)	D1542N	possibly damaging	Het
Cdh3	A	T	8: 107,263,606 (GRCm39)		probably null	Het
Cep85l	A	T	10: 53,167,906 (GRCm39)	I624K	probably benign	Het
Cplx4	T	C	18: 66,102,998 (GRCm39)	T41A	probably benign	Het
Dchs1	A	T	7: 105,406,292 (GRCm39)	D2313E	possibly damaging	Het
Dock7	T	C	4: 98,859,066 (GRCm39)	T1409A	probably benign	Het
Exo1	C	T	1: 175,714,312 (GRCm39)	P73L	probably damaging	Het
Fgfrl1	C	A	5: 108,853,242 (GRCm39)	H197Q	possibly damaging	Het
Fsbp	G	A	4: 11,583,706 (GRCm39)	G135D	probably damaging	Het
Herc3	G	A	6: 58,839,973 (GRCm39)	R362H	probably benign	Het
Herc3	T	C	6: 58,853,587 (GRCm39)	F583L	probably benign	Het
Ifna7	T	C	4: 88,734,964 (GRCm39)	V167A	probably damaging	Het
Ighv1-54	A	G	12: 115,157,596 (GRCm39)	V17A	possibly damaging	Het
Kcnh5	A	G	12: 75,134,350 (GRCm39)	Y400H	possibly damaging	Het
Kcnk16	T	A	14: 20,319,230 (GRCm39)	M1L	possibly damaging	Het
Kctd19	T	C	8: 106,123,112 (GRCm39)	T101A	probably benign	Het
Krtap12-1	G	T	10: 77,556,729 (GRCm39)	V91L	probably benign	Het
Lonp1	T	C	17: 56,928,952 (GRCm39)	E270G	possibly damaging	Het
Mgl2	T	C	11: 70,026,659 (GRCm39)	L128P	probably damaging	Het
Mrc1	A	G	2: 14,323,981 (GRCm39)	Y1106C	probably damaging	Het
Mybpc1	G	T	10: 88,406,521 (GRCm39)		probably null	Het
Mypn	C	A	10: 62,961,486 (GRCm39)	L1035F	possibly damaging	Het
Neurl1a	T	C	19: 47,228,328 (GRCm39)	L58P	probably damaging	Het
Nlrp4e	G	T	7: 23,039,988 (GRCm39)	L770F	probably damaging	Het
Npas3	A	G	12: 54,115,857 (GRCm39)	*895W	probably null	Het
Nphs2	T	C	1: 156,140,608 (GRCm39)	I115T	probably damaging	Het
Or1ad6	A	G	11: 50,860,385 (GRCm39)	D180G	probably damaging	Het
Or8g22	T	A	9: 38,958,707 (GRCm39)	H47L	unknown	Het
Patj	A	T	4: 98,569,456 (GRCm39)	K1128*	probably null	Het
Pla2g5	C	G	4: 138,528,746 (GRCm39)	C70S	probably damaging	Het
Pole4	G	A	6: 82,599,095 (GRCm39)	R119C	possibly damaging	Het
Ppm1h	G	T	10: 122,740,027 (GRCm39)	L367F	probably damaging	Het
Ppp1r13b	G	T	12: 111,812,851 (GRCm39)	R123S	probably damaging	Het
Ptpru	C	T	4: 131,535,735 (GRCm39)	C414Y	probably damaging	Het
Pum2	T	A	12: 8,769,076 (GRCm39)	Y323*	probably null	Het
Rhot2	T	C	17: 26,059,521 (GRCm39)	D407G	probably benign	Het
Rreb1	C	T	13: 38,113,579 (GRCm39)	R313W	possibly damaging	Het
Rufy4	T	C	1: 74,186,822 (GRCm39)	C537R	probably damaging	Het
Scn11a	T	A	9: 119,613,115 (GRCm39)	D825V	probably damaging	Het
Selenoi	A	G	5: 30,461,187 (GRCm39)	Y141C	probably damaging	Het
Smcr8	A	G	11: 60,670,330 (GRCm39)	T493A	probably benign	Het
Tjp2	A	T	19: 24,078,190 (GRCm39)	I901N	probably benign	Het
Tns2	C	T	15: 102,017,369 (GRCm39)	R281C	probably damaging	Het
Ttc23l	T	A	15: 10,530,781 (GRCm39)	Y277F	possibly damaging	Het
Ugcg	C	T	4: 59,207,798 (GRCm39)	P46S	probably benign	Het
Wdr1	C	T	5: 38,697,882 (GRCm39)	G228R	probably damaging	Het
Xab2	T	C	8: 3,669,053 (GRCm39)	N31S	probably damaging	Het

Other mutations in Klf3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01124:Klf3	APN	5	64,974,123 (GRCm39)	missense	possibly damaging	0.52
IGL01967:Klf3	APN	5	64,979,430 (GRCm39)	missense	probably damaging	0.99
IGL02331:Klf3	APN	5	64,986,415 (GRCm39)	missense	probably damaging	1.00
R0126:Klf3	UTSW	5	64,979,446 (GRCm39)	missense	probably benign	0.15
R1883:Klf3	UTSW	5	64,980,224 (GRCm39)	missense	probably damaging	1.00
R2095:Klf3	UTSW	5	64,979,245 (GRCm39)	missense	probably benign	0.15
R2102:Klf3	UTSW	5	64,979,266 (GRCm39)	missense	probably damaging	0.96
R3768:Klf3	UTSW	5	64,984,560 (GRCm39)	splice site	probably null
R3769:Klf3	UTSW	5	64,984,560 (GRCm39)	splice site	probably null
R3770:Klf3	UTSW	5	64,984,560 (GRCm39)	splice site	probably null
R4405:Klf3	UTSW	5	64,986,347 (GRCm39)	missense	possibly damaging	0.93
R5936:Klf3	UTSW	5	64,980,303 (GRCm39)	missense	probably damaging	1.00
R6484:Klf3	UTSW	5	64,980,372 (GRCm39)	missense	probably damaging	0.99
R9295:Klf3	UTSW	5	64,980,240 (GRCm39)	missense	possibly damaging	0.96

Predicted Primers

PCR Primer
(F):5'- TTGCCCGATGTTGTAAATGC -3'
(R):5'- GGATCACCAACTACTGCTCTTC -3'

Sequencing Primer
(F):5'- GGAAGGGAAGCACCTTTT -3'
(R):5'- ACTGCTCTTCTGTACTAAATCCCAG -3'

Posted On

2015-03-25