Incidental Mutation 'R3776:Ubxn11'
| ID |
273584 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Ubxn11
|
| Ensembl Gene |
ENSMUSG00000012126 |
| Gene Name |
UBX domain protein 11 |
| Synonyms |
4930506L07Rik, Soci, Ubxd5 |
| MMRRC Submission |
040874-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.120)
|
| Stock # |
R3776 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
4 |
| Chromosomal Location |
133829811-133854095 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
C to T
at 133835605 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Proline to Serine
at position 4
(P4S)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000117081
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000070246]
[ENSMUST00000074690]
[ENSMUST00000156750]
|
| AlphaFold |
Q9D572 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000070246
AA Change: P4S
PolyPhen 2
Score 0.930 (Sensitivity: 0.81; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000064030
Gene: ENSMUSG00000012126
AA Change: P4S
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:SEP
|
114 |
185 |
1.5e-20 |
PFAM |
|
UBX
|
268 |
350 |
2.3e-1 |
SMART |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000074690
AA Change: P4S
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000074255
Gene: ENSMUSG00000012126
AA Change: P4S
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
69 |
147 |
N/A |
INTRINSIC |
|
Pfam:SEP
|
232 |
303 |
7.9e-20 |
PFAM |
|
UBX
|
386 |
468 |
2.3e-1 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000123281
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000127632
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000131329
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000135287
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000142442
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000156323
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000156750
AA Change: P4S
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000117081
Gene: ENSMUSG00000012126
AA Change: P4S
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
68 |
146 |
N/A |
INTRINSIC |
|
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.5%
- 10x: 97.1%
- 20x: 94.3%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein with a divergent C-terminal UBX domain. The homologous protein in the rat interacts with members of the Rnd subfamily of Rho GTPases at the cell periphery through its C-terminal region. It also interacts with several heterotrimeric G proteins through their G-alpha subunits and promotes Rho GTPase activation. It is proposed to serve a bidirectional role in the promotion and inhibition of Rho activity through upstream signaling pathways. The 3' coding sequence of this gene contains a polymoprhic region of 24 nt tandem repeats. Several transcripts containing between 1.5 and five repeat units have been reported. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 44 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Acer1 |
C |
T |
17: 57,262,111 (GRCm39) |
V264M |
probably damaging |
Het |
| Adgrg1 |
C |
T |
8: 95,736,283 (GRCm39) |
S479F |
probably damaging |
Het |
| Ank2 |
T |
A |
3: 126,735,911 (GRCm39) |
|
probably benign |
Het |
| Atp2b1 |
CTTTTT |
CTTTTTT |
10: 98,815,731 (GRCm39) |
|
probably null |
Het |
| Ccdc88c |
G |
A |
12: 100,913,438 (GRCm39) |
T529M |
probably damaging |
Het |
| Cdc27 |
T |
G |
11: 104,406,263 (GRCm39) |
E617D |
probably damaging |
Het |
| Cfap54 |
A |
G |
10: 92,880,962 (GRCm39) |
V367A |
probably damaging |
Het |
| Col6a4 |
G |
A |
9: 105,928,900 (GRCm39) |
Q1445* |
probably null |
Het |
| Crispld2 |
T |
C |
8: 120,756,005 (GRCm39) |
S325P |
probably damaging |
Het |
| Dll1 |
T |
C |
17: 15,588,786 (GRCm39) |
S630G |
probably benign |
Het |
| Ednra |
A |
G |
8: 78,401,724 (GRCm39) |
S189P |
probably damaging |
Het |
| Eif6 |
T |
A |
2: 155,668,296 (GRCm39) |
T20S |
possibly damaging |
Het |
| Fbxl5 |
A |
G |
5: 43,915,618 (GRCm39) |
V555A |
possibly damaging |
Het |
| Gdpd5 |
G |
A |
7: 99,103,779 (GRCm39) |
R422Q |
probably benign |
Het |
| Glt1d1 |
T |
A |
5: 127,771,375 (GRCm39) |
F289I |
probably damaging |
Het |
| Gm5565 |
T |
A |
5: 146,095,419 (GRCm39) |
E192V |
probably benign |
Het |
| Gpc5 |
T |
C |
14: 115,607,472 (GRCm39) |
M358T |
probably benign |
Het |
| Helz2 |
G |
A |
2: 180,882,182 (GRCm39) |
R204* |
probably null |
Het |
| Hhex |
A |
T |
19: 37,425,718 (GRCm39) |
Q149L |
probably damaging |
Het |
| Kat2b |
A |
G |
17: 53,874,609 (GRCm39) |
|
probably null |
Het |
| Kif23 |
G |
A |
9: 61,832,274 (GRCm39) |
S623L |
probably benign |
Het |
| Klra2 |
A |
T |
6: 131,219,926 (GRCm39) |
L85H |
probably benign |
Het |
| Krt32 |
A |
G |
11: 99,978,947 (GRCm39) |
C36R |
probably benign |
Het |
| Megf10 |
G |
A |
18: 57,410,177 (GRCm39) |
G653S |
probably damaging |
Het |
| Mpp3 |
G |
T |
11: 101,914,193 (GRCm39) |
S134* |
probably null |
Het |
| Mttp |
T |
C |
3: 137,820,024 (GRCm39) |
|
probably null |
Het |
| Mxi1 |
C |
A |
19: 53,360,160 (GRCm39) |
A294E |
probably benign |
Het |
| Nin |
G |
T |
12: 70,085,456 (GRCm39) |
Q1592K |
possibly damaging |
Het |
| Nlrc5 |
A |
G |
8: 95,199,467 (GRCm39) |
E26G |
possibly damaging |
Het |
| Nup160 |
G |
T |
2: 90,552,420 (GRCm39) |
C1132F |
probably benign |
Het |
| Or4a15 |
A |
T |
2: 89,193,108 (GRCm39) |
S222T |
possibly damaging |
Het |
| Pdgfc |
A |
G |
3: 81,048,858 (GRCm39) |
T89A |
probably damaging |
Het |
| Pdgfrb |
A |
G |
18: 61,214,992 (GRCm39) |
D1007G |
probably benign |
Het |
| Pgbd1 |
A |
G |
13: 21,612,543 (GRCm39) |
L98P |
probably benign |
Het |
| Pkhd1l1 |
G |
A |
15: 44,378,371 (GRCm39) |
|
probably null |
Het |
| Plod1 |
A |
G |
4: 148,015,734 (GRCm39) |
V105A |
possibly damaging |
Het |
| Polg2 |
G |
T |
11: 106,670,110 (GRCm39) |
F53L |
probably benign |
Het |
| Ptprc |
T |
G |
1: 137,992,511 (GRCm39) |
Q1205H |
probably damaging |
Het |
| Rab3gap2 |
T |
C |
1: 185,009,402 (GRCm39) |
L1086P |
probably damaging |
Het |
| Rnf19a |
T |
A |
15: 36,266,058 (GRCm39) |
N13I |
probably benign |
Het |
| Slc25a19 |
A |
G |
11: 115,506,285 (GRCm39) |
Y303H |
probably damaging |
Het |
| Tnrc6c |
C |
T |
11: 117,614,355 (GRCm39) |
R838W |
probably damaging |
Het |
| Trpm3 |
T |
C |
19: 22,955,966 (GRCm39) |
F1143L |
possibly damaging |
Het |
| Zg16 |
T |
A |
7: 126,649,704 (GRCm39) |
I86F |
probably damaging |
Het |
|
| Other mutations in Ubxn11 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL02547:Ubxn11
|
APN |
4 |
133,836,895 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
IGL02559:Ubxn11
|
APN |
4 |
133,852,254 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R0015:Ubxn11
|
UTSW |
4 |
133,843,336 (GRCm39) |
splice site |
probably null |
|
|
R0586:Ubxn11
|
UTSW |
4 |
133,836,963 (GRCm39) |
missense |
possibly damaging |
0.49 |
|
R1449:Ubxn11
|
UTSW |
4 |
133,852,203 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1513:Ubxn11
|
UTSW |
4 |
133,851,452 (GRCm39) |
critical splice donor site |
probably null |
|
|
R1860:Ubxn11
|
UTSW |
4 |
133,852,149 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4395:Ubxn11
|
UTSW |
4 |
133,843,431 (GRCm39) |
missense |
possibly damaging |
0.53 |
|
R4840:Ubxn11
|
UTSW |
4 |
133,836,919 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5387:Ubxn11
|
UTSW |
4 |
133,850,737 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5460:Ubxn11
|
UTSW |
4 |
133,852,396 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5560:Ubxn11
|
UTSW |
4 |
133,853,935 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6611:Ubxn11
|
UTSW |
4 |
133,850,910 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6901:Ubxn11
|
UTSW |
4 |
133,853,575 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7195:Ubxn11
|
UTSW |
4 |
133,853,726 (GRCm39) |
missense |
possibly damaging |
0.75 |
|
R7448:Ubxn11
|
UTSW |
4 |
133,852,466 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7453:Ubxn11
|
UTSW |
4 |
133,853,540 (GRCm39) |
missense |
probably benign |
0.08 |
|
R8705:Ubxn11
|
UTSW |
4 |
133,853,551 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R9797:Ubxn11
|
UTSW |
4 |
133,851,426 (GRCm39) |
missense |
probably benign |
0.03 |
|
| Predicted Primers |
PCR Primer
(F):5'- GGCAAGGACTTCCATGTTCAG -3'
(R):5'- AAGGCCACTAGCTACTCTCTG -3'
Sequencing Primer
(F):5'- AGGACTTCCATGTTCAGAACAG -3'
(R):5'- TGCTTTCCCCAAGACGCTAGG -3'
|
| Posted On |
2015-03-25 |
Incidental Mutation