Incidental Mutation 'R3807:Nfe2l3'
ID |
274966 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Nfe2l3
|
Ensembl Gene |
ENSMUSG00000029832 |
Gene Name |
nuclear factor, erythroid derived 2, like 3 |
Synonyms |
Nrf3 |
MMRRC Submission |
040764-MU
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R3807 (G1)
|
Quality Score |
225 |
Status
|
Not validated
|
Chromosome |
6 |
Chromosomal Location |
51409650-51435748 bp(+) (GRCm39) |
Type of Mutation |
nonsense |
DNA Base Change (assembly) |
A to T
at 51434357 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Arginine to Stop codon
at position 306
(R306*)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000005103
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000005103]
[ENSMUST00000069949]
[ENSMUST00000090002]
[ENSMUST00000160133]
[ENSMUST00000203954]
[ENSMUST00000204158]
|
AlphaFold |
Q9WTM4 |
Predicted Effect |
probably null
Transcript: ENSMUST00000005103
AA Change: R306*
|
SMART Domains |
Protein: ENSMUSP00000005103 Gene: ENSMUSG00000029832 AA Change: R306*
Domain | Start | End | E-Value | Type |
transmembrane domain
|
7 |
29 |
N/A |
INTRINSIC |
low complexity region
|
117 |
134 |
N/A |
INTRINSIC |
low complexity region
|
145 |
155 |
N/A |
INTRINSIC |
low complexity region
|
390 |
405 |
N/A |
INTRINSIC |
BRLZ
|
539 |
603 |
3.68e-13 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000069949
|
SMART Domains |
Protein: ENSMUSP00000067491 Gene: ENSMUSG00000004980
Domain | Start | End | E-Value | Type |
RRM
|
10 |
82 |
1.51e-23 |
SMART |
RRM
|
101 |
173 |
7.64e-20 |
SMART |
Pfam:HnRNPA1
|
245 |
282 |
5.1e-19 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000090002
|
SMART Domains |
Protein: ENSMUSP00000087453 Gene: ENSMUSG00000004980
Domain | Start | End | E-Value | Type |
RRM
|
10 |
82 |
1.51e-23 |
SMART |
RRM
|
101 |
173 |
7.64e-20 |
SMART |
low complexity region
|
186 |
295 |
N/A |
INTRINSIC |
low complexity region
|
310 |
341 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000160133
|
SMART Domains |
Protein: ENSMUSP00000124920 Gene: ENSMUSG00000029832
Domain | Start | End | E-Value | Type |
transmembrane domain
|
7 |
29 |
N/A |
INTRINSIC |
low complexity region
|
117 |
134 |
N/A |
INTRINSIC |
low complexity region
|
145 |
155 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000203954
|
SMART Domains |
Protein: ENSMUSP00000145028 Gene: ENSMUSG00000004980
Domain | Start | End | E-Value | Type |
RRM
|
22 |
94 |
1.51e-23 |
SMART |
RRM
|
113 |
185 |
7.64e-20 |
SMART |
low complexity region
|
198 |
307 |
N/A |
INTRINSIC |
low complexity region
|
322 |
353 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000204158
|
SMART Domains |
Protein: ENSMUSP00000145383 Gene: ENSMUSG00000004980
Domain | Start | End | E-Value | Type |
RRM
|
10 |
82 |
1.51e-23 |
SMART |
RRM
|
101 |
173 |
7.64e-20 |
SMART |
Pfam:HnRNPA1
|
245 |
282 |
9.5e-19 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000204885
|
Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.7%
- 10x: 97.5%
- 20x: 95.7%
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the cap 'n' collar basic-region leucine zipper family of transcription factors. The encoded protein heterodimerizes with small musculoaponeurotic fibrosarcoma factors to bind antioxidant response elements in target genes. This protein is a membrane bound glycoprotein that is targeted to the endoplasmic reticulum and the nuclear envelope. Pseudogenes of this gene are found on chromosomes 16, 17, and 18. [provided by RefSeq, Mar 2009] PHENOTYPE: Mice homozygous for disruptions in this gene display a normal phenotype. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 51 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Adat1 |
A |
T |
8: 112,717,002 (GRCm39) |
W2R |
probably damaging |
Het |
Arhgap42 |
A |
G |
9: 9,008,034 (GRCm39) |
I563T |
probably damaging |
Het |
Armcx1 |
T |
C |
X: 133,622,014 (GRCm39) |
V372A |
probably damaging |
Het |
Bicd1 |
T |
A |
6: 149,420,489 (GRCm39) |
L780M |
probably damaging |
Het |
Bpifb1 |
C |
A |
2: 154,055,922 (GRCm39) |
N329K |
probably benign |
Het |
Ccdc113 |
A |
T |
8: 96,269,281 (GRCm39) |
N193I |
probably damaging |
Het |
Cebpz |
A |
T |
17: 79,242,847 (GRCm39) |
L269Q |
probably damaging |
Het |
Cttn |
C |
T |
7: 143,999,588 (GRCm39) |
V290M |
probably damaging |
Het |
Ctu1 |
T |
C |
7: 43,326,097 (GRCm39) |
L252P |
probably damaging |
Het |
Dmbt1 |
T |
A |
7: 130,713,819 (GRCm39) |
M1455K |
possibly damaging |
Het |
Eme1 |
A |
G |
11: 94,541,418 (GRCm39) |
W135R |
probably damaging |
Het |
Entpd7 |
T |
G |
19: 43,713,979 (GRCm39) |
|
probably null |
Het |
Eri2 |
A |
T |
7: 119,385,231 (GRCm39) |
C423* |
probably null |
Het |
Erich1 |
T |
C |
8: 14,083,695 (GRCm39) |
N125S |
probably benign |
Het |
Fam149a |
T |
A |
8: 45,834,647 (GRCm39) |
T51S |
possibly damaging |
Het |
Fer1l4 |
C |
T |
2: 155,887,603 (GRCm39) |
G531D |
probably damaging |
Het |
Frem2 |
A |
T |
3: 53,560,870 (GRCm39) |
D1212E |
probably benign |
Het |
Garin3 |
G |
A |
11: 46,295,780 (GRCm39) |
A51T |
possibly damaging |
Het |
Get4 |
G |
T |
5: 139,238,286 (GRCm39) |
V23F |
probably damaging |
Het |
Gm11595 |
C |
T |
11: 99,663,380 (GRCm39) |
R100H |
unknown |
Het |
Gria1 |
T |
C |
11: 57,201,504 (GRCm39) |
W712R |
probably damaging |
Het |
Herc2 |
A |
G |
7: 55,857,557 (GRCm39) |
N4047D |
probably damaging |
Het |
Hoxc9 |
A |
G |
15: 102,890,116 (GRCm39) |
Y11C |
possibly damaging |
Het |
Lama2 |
GCCC |
GCC |
10: 27,066,661 (GRCm39) |
|
probably null |
Het |
Lrrc56 |
A |
G |
7: 140,789,298 (GRCm39) |
T393A |
probably benign |
Het |
Lrrc7 |
T |
C |
3: 157,891,130 (GRCm39) |
I346V |
probably benign |
Het |
Med14 |
T |
C |
X: 12,553,416 (GRCm39) |
Y463C |
probably damaging |
Het |
Nalcn |
T |
A |
14: 123,515,599 (GRCm39) |
D1734V |
probably damaging |
Het |
Nolc1 |
CAG |
CAGAAG |
19: 46,069,798 (GRCm39) |
|
probably benign |
Het |
Nolc1 |
CAG |
CAGAAG |
19: 46,069,810 (GRCm39) |
|
probably benign |
Het |
Nolc1 |
CCAGCAGCAGCAGCAGCAGCAGCAGC |
CCAGCAGCAGCAGCAGCAGCAGCAGCAGC |
19: 46,069,791 (GRCm39) |
|
probably benign |
Het |
Npr1 |
A |
T |
3: 90,366,033 (GRCm39) |
V586E |
probably damaging |
Het |
Or2d2b |
A |
G |
7: 106,705,670 (GRCm39) |
S133P |
probably benign |
Het |
Or5h24 |
A |
C |
16: 58,919,206 (GRCm39) |
*50G |
probably null |
Het |
Pcdhb4 |
T |
C |
18: 37,442,367 (GRCm39) |
F559S |
probably damaging |
Het |
Psmd12 |
T |
G |
11: 107,386,591 (GRCm39) |
D387E |
probably benign |
Het |
Psme4 |
T |
A |
11: 30,806,027 (GRCm39) |
|
probably null |
Het |
Ptch1 |
T |
G |
13: 63,672,773 (GRCm39) |
E944A |
probably benign |
Het |
Rgs11 |
A |
T |
17: 26,422,474 (GRCm39) |
I69F |
probably damaging |
Het |
Ryr1 |
C |
T |
7: 28,719,577 (GRCm39) |
A4277T |
probably damaging |
Het |
Setbp1 |
C |
T |
18: 78,826,537 (GRCm39) |
V1359I |
probably benign |
Het |
Sis |
A |
T |
3: 72,832,929 (GRCm39) |
V956E |
probably benign |
Het |
Slc35f3 |
T |
A |
8: 127,115,978 (GRCm39) |
W302R |
probably damaging |
Het |
Syt16 |
A |
G |
12: 74,276,172 (GRCm39) |
E212G |
possibly damaging |
Het |
Tdp2 |
C |
A |
13: 25,015,776 (GRCm39) |
S21* |
probably null |
Het |
Tfrc |
A |
T |
16: 32,435,644 (GRCm39) |
N173I |
possibly damaging |
Het |
Tmem132b |
A |
T |
5: 125,864,644 (GRCm39) |
I917F |
probably damaging |
Het |
Vbp1 |
T |
C |
X: 74,566,948 (GRCm39) |
V122A |
probably damaging |
Het |
Vmn1r225 |
G |
A |
17: 20,723,114 (GRCm39) |
W185* |
probably null |
Het |
Vmn1r70 |
A |
G |
7: 10,367,715 (GRCm39) |
T68A |
probably benign |
Het |
Zfp518a |
A |
G |
19: 40,903,241 (GRCm39) |
K1057E |
possibly damaging |
Het |
|
Other mutations in Nfe2l3 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL02705:Nfe2l3
|
APN |
6 |
51,410,098 (GRCm39) |
missense |
probably damaging |
0.96 |
IGL02803:Nfe2l3
|
APN |
6 |
51,434,291 (GRCm39) |
missense |
possibly damaging |
0.50 |
R0277:Nfe2l3
|
UTSW |
6 |
51,434,448 (GRCm39) |
missense |
probably benign |
0.30 |
R0693:Nfe2l3
|
UTSW |
6 |
51,410,034 (GRCm39) |
missense |
possibly damaging |
0.94 |
R1397:Nfe2l3
|
UTSW |
6 |
51,410,274 (GRCm39) |
missense |
probably benign |
0.00 |
R1455:Nfe2l3
|
UTSW |
6 |
51,434,744 (GRCm39) |
missense |
possibly damaging |
0.91 |
R1541:Nfe2l3
|
UTSW |
6 |
51,434,585 (GRCm39) |
missense |
probably damaging |
0.98 |
R1753:Nfe2l3
|
UTSW |
6 |
51,410,392 (GRCm39) |
missense |
probably null |
0.96 |
R1946:Nfe2l3
|
UTSW |
6 |
51,434,295 (GRCm39) |
missense |
probably damaging |
1.00 |
R2034:Nfe2l3
|
UTSW |
6 |
51,435,350 (GRCm39) |
missense |
possibly damaging |
0.50 |
R3932:Nfe2l3
|
UTSW |
6 |
51,433,595 (GRCm39) |
missense |
possibly damaging |
0.94 |
R4271:Nfe2l3
|
UTSW |
6 |
51,433,614 (GRCm39) |
missense |
probably damaging |
0.99 |
R4604:Nfe2l3
|
UTSW |
6 |
51,427,992 (GRCm39) |
missense |
probably damaging |
0.99 |
R4816:Nfe2l3
|
UTSW |
6 |
51,433,604 (GRCm39) |
missense |
probably damaging |
0.99 |
R5765:Nfe2l3
|
UTSW |
6 |
51,434,226 (GRCm39) |
missense |
probably damaging |
1.00 |
R5893:Nfe2l3
|
UTSW |
6 |
51,434,832 (GRCm39) |
missense |
probably damaging |
1.00 |
R7378:Nfe2l3
|
UTSW |
6 |
51,434,276 (GRCm39) |
nonsense |
probably null |
|
R7490:Nfe2l3
|
UTSW |
6 |
51,434,524 (GRCm39) |
missense |
possibly damaging |
0.65 |
R7624:Nfe2l3
|
UTSW |
6 |
51,435,252 (GRCm39) |
missense |
probably damaging |
1.00 |
R8210:Nfe2l3
|
UTSW |
6 |
51,428,065 (GRCm39) |
missense |
probably benign |
0.00 |
R8678:Nfe2l3
|
UTSW |
6 |
51,435,153 (GRCm39) |
missense |
possibly damaging |
0.54 |
R9071:Nfe2l3
|
UTSW |
6 |
51,434,243 (GRCm39) |
missense |
probably benign |
0.01 |
R9146:Nfe2l3
|
UTSW |
6 |
51,410,172 (GRCm39) |
missense |
probably damaging |
0.99 |
R9625:Nfe2l3
|
UTSW |
6 |
51,434,925 (GRCm39) |
missense |
probably damaging |
0.99 |
Z1177:Nfe2l3
|
UTSW |
6 |
51,410,277 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
Predicted Primers |
PCR Primer
(F):5'- CGTAAGACTATTAGCAATGGAACTG -3'
(R):5'- ACCTGTGGCCAATGACATTAG -3'
Sequencing Primer
(F):5'- GCAATGGAACTGTTTGAAATAGTG -3'
(R):5'- GTGGCCAATGACATTAGGTTTATTCC -3'
|
Posted On |
2015-04-02 |