Incidental Mutation 'R3808:Slamf1'
ID 275014
Institutional Source Beutler Lab
Gene Symbol Slamf1
Ensembl Gene ENSMUSG00000015316
Gene Name signaling lymphocytic activation molecule family member 1
Synonyms ESTM51, Slam, CDw150, IPO-3, CD150
MMRRC Submission 040765-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R3808 (G1)
Quality Score 225
Status Not validated
Chromosome 1
Chromosomal Location 171594700-171628752 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 171625745 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glycine at position 307 (D307G)
Ref Sequence ENSEMBL: ENSMUSP00000015460 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000015460]
AlphaFold Q9QUM4
Predicted Effect probably null
Transcript: ENSMUST00000015460
AA Change: D307G

PolyPhen 2 Score 0.696 (Sensitivity: 0.86; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000015460
Gene: ENSMUSG00000015316
AA Change: D307G

DomainStartEndE-ValueType
Pfam:SLAM 1 126 3.1e-62 PFAM
SCOP:d1cs6a3 144 231 6e-5 SMART
Blast:IG_like 154 224 5e-6 BLAST
transmembrane domain 243 265 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000163992
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.7%
  • 10x: 97.6%
  • 20x: 95.8%
Validation Efficiency
MGI Phenotype PHENOTYPE: Homozygous null mice are fertile and display impaired T cell and macrophage cytokine production. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 55 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2700049A03Rik G T 12: 71,211,320 (GRCm39) E685* probably null Het
2700049A03Rik A T 12: 71,211,321 (GRCm39) E685V possibly damaging Het
Aldh3a2 G T 11: 61,149,623 (GRCm39) L248M probably damaging Het
Als2 A G 1: 59,209,609 (GRCm39) S1458P probably benign Het
Aoc1l3 C T 6: 48,964,928 (GRCm39) P312L possibly damaging Het
Arhgap5 A G 12: 52,613,970 (GRCm39) E192G possibly damaging Het
Atg2a A G 19: 6,302,846 (GRCm39) K1019R possibly damaging Het
Atp2b1 A G 10: 98,839,010 (GRCm39) K613E possibly damaging Het
Carm1 T C 9: 21,498,258 (GRCm39) C421R probably damaging Het
Cdh17 A T 4: 11,795,671 (GRCm39) Y417F probably damaging Het
Cers1 A G 8: 70,782,660 (GRCm39) D10G possibly damaging Het
Clptm1l A C 13: 73,760,573 (GRCm39) M319L probably benign Het
Cntnap3 A G 13: 64,929,618 (GRCm39) V527A probably damaging Het
Creb3l2 A G 6: 37,332,625 (GRCm39) S290P probably damaging Het
Dock4 T G 12: 40,722,809 (GRCm39) V305G probably damaging Het
Dtl A C 1: 191,280,466 (GRCm39) L356R probably damaging Het
Eftud2 A T 11: 102,732,289 (GRCm39) probably null Het
Eif2b4 A G 5: 31,348,512 (GRCm39) S88P possibly damaging Het
Fat4 T G 3: 39,036,587 (GRCm39) V3413G possibly damaging Het
Fgfr2 T C 7: 129,801,578 (GRCm39) M218V probably benign Het
Grin2b A G 6: 135,900,269 (GRCm39) L204P probably damaging Het
Kcnj12 A G 11: 60,961,103 (GRCm39) N467S probably benign Het
Klhdc3 T A 17: 46,988,858 (GRCm39) N111Y possibly damaging Het
Lin9 A G 1: 180,486,676 (GRCm39) I81V probably null Het
Lrp2 T C 2: 69,331,892 (GRCm39) D1621G probably damaging Het
Lrp4 T A 2: 91,307,047 (GRCm39) D389E probably damaging Het
Med15 C T 16: 17,473,598 (GRCm39) probably benign Het
Nbea T C 3: 55,625,269 (GRCm39) N2274S probably benign Het
Nr3c2 G A 8: 77,635,343 (GRCm39) G148D probably damaging Het
Or10s1 A T 9: 39,985,605 (GRCm39) M5L probably benign Het
Or14j6 T C 17: 38,214,464 (GRCm39) V9A probably benign Het
Or4c112 G T 2: 88,853,770 (GRCm39) H192Q probably benign Het
Paxip1 A G 5: 27,977,027 (GRCm39) probably benign Het
Pfas T C 11: 68,880,779 (GRCm39) probably benign Het
Plin3 C A 17: 56,593,275 (GRCm39) A96S probably damaging Het
Pnck T A X: 72,700,550 (GRCm39) I288F probably damaging Het
Ppp4c C T 7: 126,386,499 (GRCm39) G166D probably damaging Het
Prss43 A T 9: 110,656,840 (GRCm39) R115S probably damaging Het
Rassf2 T C 2: 131,840,180 (GRCm39) probably null Het
Rdh16f1 T A 10: 127,624,568 (GRCm39) D135E probably benign Het
Rdh16f1 G A 10: 127,624,569 (GRCm39) V136M probably damaging Het
Rgs12 A G 5: 35,189,698 (GRCm39) E702G probably damaging Het
Rnf213 A G 11: 119,370,384 (GRCm39) K4728E probably damaging Het
Ros1 T G 10: 51,996,944 (GRCm39) T1243P probably benign Het
Sall1 G A 8: 89,758,101 (GRCm39) Q668* probably null Het
Sbf2 C A 7: 110,088,487 (GRCm39) *45L probably null Het
Serpina3j A T 12: 104,286,086 (GRCm39) I414F probably benign Het
Sh2d3c T C 2: 32,636,108 (GRCm39) Y159H probably damaging Het
Slc22a13 T C 9: 119,025,143 (GRCm39) T178A probably benign Het
Smchd1 A T 17: 71,736,536 (GRCm39) L588H probably damaging Het
Trim12a G A 7: 103,956,201 (GRCm39) A113V probably benign Het
Vil1 T C 1: 74,466,772 (GRCm39) V654A probably benign Het
Vmn1r202 T C 13: 22,686,070 (GRCm39) T116A possibly damaging Het
Zfp267 T G 3: 36,219,792 (GRCm39) probably null Het
Zfp607a G A 7: 27,578,826 (GRCm39) R632H probably benign Het
Other mutations in Slamf1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02559:Slamf1 APN 1 171,594,826 (GRCm39) missense possibly damaging 0.46
IGL03138:Slamf1 UTSW 1 171,604,652 (GRCm39) missense possibly damaging 0.81
R0468:Slamf1 UTSW 1 171,619,939 (GRCm39) splice site probably benign
R1760:Slamf1 UTSW 1 171,604,734 (GRCm39) missense probably benign 0.16
R2149:Slamf1 UTSW 1 171,594,840 (GRCm39) missense probably damaging 1.00
R3755:Slamf1 UTSW 1 171,604,728 (GRCm39) missense probably damaging 0.99
R3809:Slamf1 UTSW 1 171,625,745 (GRCm39) missense probably null 0.70
R4321:Slamf1 UTSW 1 171,602,694 (GRCm39) critical splice donor site probably null
R4780:Slamf1 UTSW 1 171,604,829 (GRCm39) missense probably benign 0.04
R5566:Slamf1 UTSW 1 171,615,538 (GRCm39) missense possibly damaging 0.48
R5807:Slamf1 UTSW 1 171,602,630 (GRCm39) missense probably damaging 1.00
R7092:Slamf1 UTSW 1 171,604,757 (GRCm39) missense probably benign
R7727:Slamf1 UTSW 1 171,602,467 (GRCm39) missense possibly damaging 0.51
R8146:Slamf1 UTSW 1 171,619,887 (GRCm39) missense probably benign 0.10
R8252:Slamf1 UTSW 1 171,594,796 (GRCm39) start codon destroyed probably null 0.99
R9084:Slamf1 UTSW 1 171,602,522 (GRCm39) missense probably damaging 1.00
R9603:Slamf1 UTSW 1 171,625,771 (GRCm39) missense probably damaging 1.00
Z1088:Slamf1 UTSW 1 171,627,160 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- TTTGGGAGGATTCTCAGCAG -3'
(R):5'- TGCTCCCCATGTGATCTAGC -3'

Sequencing Primer
(F):5'- TTCTCAGCAGGGAGGAAGTC -3'
(R):5'- ATGTGATCTAGCCCACTTTCCTGG -3'
Posted On 2015-04-02