Mutagenetix > Incidental Mutation

Incidental Mutation 'R3838:Atg10'

277017

Institutional Source

Beutler Lab

Gene Symbol

Atg10

Ensembl Gene

ENSMUSG00000021619

Gene Name

autophagy related 10

Synonyms

APG10, Apg10l, 5430428K15Rik, 5330424L23Rik, Apg10p

MMRRC Submission

040779-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.079) question?

Stock #

R3838 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

91083475-91372087 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 91085499 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Lysine at position 150 (I150K)

Ref Sequence

ENSEMBL: ENSMUSP00000022119 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022119] [ENSMUST00000224449]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000022119
AA Change: I150K

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000022119
Gene: ENSMUSG00000021619
AA Change: I150K

Domain	Start	End	E-Value	Type
Pfam:Autophagy_act_C	95	162	9.1e-19	PFAM
low complexity region	188	202	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000223729

Predicted Effect

probably benign
Transcript: ENSMUST00000224449

Meta Mutation Damage Score

0.1966

Coding Region Coverage

1x: 99.3%
3x: 98.8%
10x: 97.8%
20x: 96.4%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Autophagy is a process for the bulk degradation of cytosolic compartments by lysosomes. ATG10 is an E2-like enzyme involved in 2 ubiquitin-like modifications essential for autophagosome formation: ATG12 (MIM 609608)-ATG5 (MIM 604261) conjugation and modification of a soluble form of MAP-LC3 (MAP1LC3A; MIM 601242), a homolog of yeast Apg8, to a membrane-bound form (Nemoto et al., 2003 [PubMed 12890687]).[supplied by OMIM, Mar 2008]

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930486L24Rik	A	G	13: 60,993,041 (GRCm39)	Y213H	probably damaging	Het
Alg8	C	T	7: 97,037,752 (GRCm39)	H379Y	probably damaging	Het
Arhgef25	T	C	10: 127,025,605 (GRCm39)	T12A	probably benign	Het
Arid4a	A	G	12: 71,122,559 (GRCm39)	E980G	possibly damaging	Het
Aspm	C	T	1: 139,405,792 (GRCm39)	H1560Y	probably benign	Het
Bud13	A	C	9: 46,201,490 (GRCm39)	Q387P	possibly damaging	Het
Champ1	A	G	8: 13,929,939 (GRCm39)	Y699C	probably damaging	Het
Clstn1	A	G	4: 149,722,790 (GRCm39)	E476G	probably damaging	Het
Col2a1	T	C	15: 97,886,857 (GRCm39)	D345G	unknown	Het
Col2a1	A	T	15: 97,898,462 (GRCm39)		probably benign	Het
Col9a2	C	G	4: 120,911,455 (GRCm39)	R599G	probably damaging	Het
Dnajb2	G	A	1: 75,218,124 (GRCm39)		probably null	Het
Dock4	G	T	12: 40,844,623 (GRCm39)		probably null	Het
Epx	A	T	11: 87,765,656 (GRCm39)	L101Q	probably damaging	Het
F13a1	A	T	13: 37,231,398 (GRCm39)	N21K	probably damaging	Het
Fam13c	C	T	10: 70,378,478 (GRCm39)	S336L	probably damaging	Het
Foxj3	T	A	4: 119,473,821 (GRCm39)	H215Q	possibly damaging	Het
Gcnt4	A	T	13: 97,083,522 (GRCm39)	R273*	probably null	Het
Gpam	T	C	19: 55,068,890 (GRCm39)	N450S	probably benign	Het
Hivep2	C	A	10: 14,004,713 (GRCm39)	T437K	probably benign	Het
Hmcn2	T	C	2: 31,303,419 (GRCm39)	L3020P	probably damaging	Het
Hmgcr	A	G	13: 96,795,597 (GRCm39)	I324T	probably benign	Het
Ighmbp2	T	C	19: 3,321,658 (GRCm39)	Y367C	probably benign	Het
Lrrc14b	A	G	13: 74,511,664 (GRCm39)	C139R	possibly damaging	Het
Lsamp	A	T	16: 41,954,675 (GRCm39)	E174V	possibly damaging	Het
Mid1ip1	T	C	X: 10,584,620 (GRCm39)	V51A	possibly damaging	Het
Mrc2	G	A	11: 105,239,257 (GRCm39)		probably null	Het
Msn	C	A	X: 95,203,805 (GRCm39)	Q303K	probably damaging	Het
Myh7b	A	G	2: 155,474,909 (GRCm39)	K1816E	probably damaging	Het
Nap1l1	T	A	10: 111,331,183 (GRCm39)		probably null	Het
Nme2	T	A	11: 93,840,803 (GRCm39)	E252D	probably benign	Het
Ntpcr	G	A	8: 126,464,111 (GRCm39)	V79M	probably damaging	Het
Ogdh	C	T	11: 6,288,627 (GRCm39)	R235*	probably null	Het
Or10d1	A	G	9: 39,484,267 (GRCm39)	V96A	probably benign	Het
Or10w1	A	G	19: 13,632,321 (GRCm39)	D176G	probably benign	Het
Or9k2	C	A	10: 129,998,275 (GRCm39)	E307*	probably null	Het
P3r3urf	A	G	4: 116,030,718 (GRCm39)	T41A	probably benign	Het
Pcdh20	T	C	14: 88,705,899 (GRCm39)	N467S	probably benign	Het
Pkhd1	G	A	1: 20,604,853 (GRCm39)	T1154I	possibly damaging	Het
Polq	G	T	16: 36,898,711 (GRCm39)	R2157I	probably damaging	Het
Reep6	C	A	10: 80,171,723 (GRCm39)	A533E	probably damaging	Het
Senp2	T	C	16: 21,828,485 (GRCm39)	S32P	probably damaging	Het
Septin11	T	A	5: 93,296,258 (GRCm39)	I52N	probably damaging	Het
Shld2	T	C	14: 33,967,325 (GRCm39)	D77G	probably benign	Het
Slc17a4	C	T	13: 24,085,752 (GRCm39)	R387H	probably benign	Het
Spdye4b	C	T	5: 143,178,084 (GRCm39)	T11I	probably benign	Het
Srrt	C	T	5: 137,300,387 (GRCm39)		probably null	Het
Sspo	T	A	6: 48,457,754 (GRCm39)	C3085S	probably damaging	Het
Stim1	C	T	7: 102,060,503 (GRCm39)	T182I	possibly damaging	Het
Thbs2	C	A	17: 14,908,113 (GRCm39)	V217L	probably benign	Het
Thpo	G	A	16: 20,547,498 (GRCm39)	R38C	probably damaging	Het
Tmem210	A	G	2: 25,178,444 (GRCm39)	E35G	possibly damaging	Het
Trim12c	T	A	7: 103,990,075 (GRCm39)		probably benign	Het
Tvp23b	A	G	11: 62,774,455 (GRCm39)	H33R	possibly damaging	Het
Usp14	A	G	18: 10,024,532 (GRCm39)		probably null	Het
Vmn2r73	A	G	7: 85,507,258 (GRCm39)	W685R	probably benign	Het
Zfp618	G	A	4: 63,051,801 (GRCm39)	A861T	probably benign	Het
Zfp715	A	G	7: 42,949,180 (GRCm39)	V260A	probably benign	Het

Other mutations in Atg10

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00519:Atg10	APN	13	91,302,330 (GRCm39)	splice site	probably benign
IGL03131:Atg10	APN	13	91,085,412 (GRCm39)	missense	probably null	0.99
R0362:Atg10	UTSW	13	91,189,109 (GRCm39)	critical splice acceptor site	probably null
R0826:Atg10	UTSW	13	91,084,705 (GRCm39)	critical splice donor site	probably null
R1593:Atg10	UTSW	13	91,302,380 (GRCm39)	missense	probably benign	0.02
R2918:Atg10	UTSW	13	91,189,027 (GRCm39)	missense	probably damaging	1.00
R3012:Atg10	UTSW	13	91,302,397 (GRCm39)	missense	probably damaging	0.99
R3036:Atg10	UTSW	13	91,189,017 (GRCm39)	missense	probably damaging	1.00
R3837:Atg10	UTSW	13	91,085,499 (GRCm39)	missense	probably damaging	1.00
R3839:Atg10	UTSW	13	91,085,499 (GRCm39)	missense	probably damaging	1.00
R4324:Atg10	UTSW	13	91,189,085 (GRCm39)	missense	probably damaging	1.00
R6195:Atg10	UTSW	13	91,356,555 (GRCm39)	splice site	probably null
R6478:Atg10	UTSW	13	91,085,466 (GRCm39)	missense	probably damaging	1.00
R8287:Atg10	UTSW	13	91,170,799 (GRCm39)	splice site	probably benign
R9036:Atg10	UTSW	13	91,189,071 (GRCm39)	missense	probably benign	0.07
R9151:Atg10	UTSW	13	91,189,032 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TTTAGCCTGGCTTTTAGAGTCA -3'
(R):5'- ACACCTACACATGTGTATGCAC -3'

Sequencing Primer
(F):5'- TGGCTTTTAGAGTCAGATGAAAAG -3'
(R):5'- TGCACACATACACATGCATG -3'

Posted On

2015-04-06