Mutagenetix > Incidental Mutations

Incidental Mutation 'R3838:Gcnt4'

277019

Institutional Source

Beutler Lab

Gene Symbol

Gcnt4

Ensembl Gene

ENSMUSG00000091387

Gene Name

glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)

Synonyms

LOC218476, LOC238786, Gm73, C2GNT3

MMRRC Submission

040779-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.102) question?

Stock #

R3838 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

96924689-96950906 bp(+) (GRCm38)

Type of Mutation

nonsense

DNA Base Change (assembly)

A to T at 96947014 bp

Zygosity

Heterozygous

Amino Acid Change

Arginine to Stop codon at position 273 (R273*)

Ref Sequence

ENSEMBL: ENSMUSP00000130496 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000171324]

Predicted Effect

probably null
Transcript: ENSMUST00000171324
AA Change: R273*

SMART Domains

Protein: ENSMUSP00000130496
Gene: ENSMUSG00000091387
AA Change: R273*

Domain	Start	End	E-Value	Type
transmembrane domain	17	39	N/A	INTRINSIC
Pfam:Branch	134	403	1.1e-52	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000222094

Meta Mutation Damage Score

0.9701

Coding Region Coverage

1x: 99.3%
3x: 98.8%
10x: 97.8%
20x: 96.4%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele display neutrophilia, increased aggression towards males, reduced serum thyroxine levels, and altered O-glycan structures in the stomach, colon, and small intestine. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700042G07Rik	A	G	4: 116,173,521	T41A	probably benign	Het
4930486L24Rik	A	G	13: 60,845,227	Y213H	probably damaging	Het
Alg8	C	T	7: 97,388,545	H379Y	probably damaging	Het
Arhgef25	T	C	10: 127,189,736	T12A	probably benign	Het
Arid4a	A	G	12: 71,075,785	E980G	possibly damaging	Het
Aspm	C	T	1: 139,478,054	H1560Y	probably benign	Het
Atg10	A	T	13: 90,937,380	I150K	probably damaging	Het
Bud13	A	C	9: 46,290,192	Q387P	possibly damaging	Het
Champ1	A	G	8: 13,879,939	Y699C	probably damaging	Het
Clstn1	A	G	4: 149,638,333	E476G	probably damaging	Het
Col2a1	T	C	15: 97,988,976	D345G	unknown	Het
Col2a1	A	T	15: 98,000,581		probably benign	Het
Col9a2	C	G	4: 121,054,258	R599G	probably damaging	Het
Dnajb2	G	A	1: 75,241,480		probably null	Het
Dock4	G	T	12: 40,794,624		probably null	Het
Epx	A	T	11: 87,874,830	L101Q	probably damaging	Het
F13a1	A	T	13: 37,047,424	N21K	probably damaging	Het
Fam13c	C	T	10: 70,542,648	S336L	probably damaging	Het
Fam35a	T	C	14: 34,245,368	D77G	probably benign	Het
Foxj3	T	A	4: 119,616,624	H215Q	possibly damaging	Het
Gpam	T	C	19: 55,080,458	N450S	probably benign	Het
Hivep2	C	A	10: 14,128,969	T437K	probably benign	Het
Hmcn2	T	C	2: 31,413,407	L3020P	probably damaging	Het
Hmgcr	A	G	13: 96,659,089	I324T	probably benign	Het
Ighmbp2	T	C	19: 3,271,658	Y367C	probably benign	Het
Lrrc14b	A	G	13: 74,363,545	C139R	possibly damaging	Het
Lsamp	A	T	16: 42,134,312	E174V	possibly damaging	Het
Mid1ip1	T	C	X: 10,718,381	V51A	possibly damaging	Het
Mrc2	G	A	11: 105,348,431		probably null	Het
Msn	C	A	X: 96,160,199	Q303K	probably damaging	Het
Myh7b	A	G	2: 155,632,989	K1816E	probably damaging	Het
Nap1l1	T	A	10: 111,495,322		probably null	Het
Nme2	T	A	11: 93,949,977	E252D	probably benign	Het
Ntpcr	G	A	8: 125,737,372	V79M	probably damaging	Het
Ogdh	C	T	11: 6,338,627	R235*	probably null	Het
Olfr1490	A	G	19: 13,654,957	D176G	probably benign	Het
Olfr825	C	A	10: 130,162,406	E307*	probably null	Het
Olfr959	A	G	9: 39,572,971	V96A	probably benign	Het
Pcdh20	T	C	14: 88,468,463	N467S	probably benign	Het
Pkhd1	G	A	1: 20,534,629	T1154I	possibly damaging	Het
Polq	G	T	16: 37,078,349	R2157I	probably damaging	Het
Reep6	C	A	10: 80,335,889	A533E	probably damaging	Het
Senp2	T	C	16: 22,009,735	S32P	probably damaging	Het
Sept11	T	A	5: 93,148,399	I52N	probably damaging	Het
Slc17a4	C	T	13: 23,901,769	R387H	probably benign	Het
Spdye4b	C	T	5: 143,192,329	T11I	probably benign	Het
Srrt	C	T	5: 137,302,125		probably null	Het
Sspo	T	A	6: 48,480,820	C3085S	probably damaging	Het
Stim1	C	T	7: 102,411,296	T182I	possibly damaging	Het
Thbs2	C	A	17: 14,687,851	V217L	probably benign	Het
Thpo	G	A	16: 20,728,748	R38C	probably damaging	Het
Tmem210	A	G	2: 25,288,432	E35G	possibly damaging	Het
Trim12c	T	A	7: 104,340,868		probably benign	Het
Tvp23b	A	G	11: 62,883,629	H33R	possibly damaging	Het
Usp14	A	G	18: 10,024,532		probably null	Het
Vmn2r73	A	G	7: 85,858,050	W685R	probably benign	Het
Zfp618	G	A	4: 63,133,564	A861T	probably benign	Het
Zfp715	A	G	7: 43,299,756	V260A	probably benign	Het

Other mutations in Gcnt4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00950:Gcnt4	APN	13	96946556	missense	probably damaging	1.00
IGL02677:Gcnt4	APN	13	96947233	missense	probably benign
IGL02936:Gcnt4	APN	13	96946411	missense	probably benign	0.00
R0332:Gcnt4	UTSW	13	96946510	missense	probably benign	0.01
R0741:Gcnt4	UTSW	13	96946432	nonsense	probably null
R0853:Gcnt4	UTSW	13	96946835	missense	probably damaging	1.00
R2156:Gcnt4	UTSW	13	96946466	missense	probably damaging	0.99
R3837:Gcnt4	UTSW	13	96947014	nonsense	probably null
R3839:Gcnt4	UTSW	13	96947014	nonsense	probably null
R4434:Gcnt4	UTSW	13	96946342	missense	probably benign	0.00
R4611:Gcnt4	UTSW	13	96946482	missense	probably benign
R4782:Gcnt4	UTSW	13	96947406	missense	possibly damaging	0.88
R5853:Gcnt4	UTSW	13	96946652	missense	probably benign	0.01
R6013:Gcnt4	UTSW	13	96947278	missense	possibly damaging	0.95
R6139:Gcnt4	UTSW	13	96946852	missense	probably benign	0.16
R6329:Gcnt4	UTSW	13	96947273	missense	probably damaging	1.00
R7131:Gcnt4	UTSW	13	96946519	missense	probably damaging	0.98
R7217:Gcnt4	UTSW	13	96946310	missense	probably damaging	0.98
R7497:Gcnt4	UTSW	13	96946960	missense	possibly damaging	0.52
R7509:Gcnt4	UTSW	13	96947170	missense	probably benign	0.28
R7592:Gcnt4	UTSW	13	96947161	missense	probably benign	0.02
Z1177:Gcnt4	UTSW	13	96946453	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- AGACCTCCTCAAGTCTTCCG -3'
(R):5'- CCGGATTAAGGTGGCCCAAAAG -3'

Sequencing Primer
(F):5'- GTTCAGTGGAAGTACGTCATCAACC -3'
(R):5'- TTAAGGTGGCCCAAAAGTGCTC -3'

Posted On

2015-04-06