Incidental Mutation 'R3842:Or9k2'
| ID |
277212 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or9k2
|
| Ensembl Gene |
ENSMUSG00000058084 |
| Gene Name |
olfactory receptor family 9 subfamily K member 2 |
| Synonyms |
GA_x6K02T2PULF-11834065-11833103, Olfr825, MOR210-1 |
| MMRRC Submission |
040782-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.381)
|
| Stock # |
R3842 (G1)
|
| Quality Score |
176 |
|
Status
|
Validated
|
| Chromosome |
10 |
| Chromosomal Location |
129998231-129999193 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
G to A
at 129998770 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Arginine to Cysteine
at position 142
(R142C)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000149981
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000076814]
[ENSMUST00000216530]
|
| AlphaFold |
Q8VFU7 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000076814
AA Change: R142C
PolyPhen 2
Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)
|
| SMART Domains |
Protein: ENSMUSP00000076091
Gene: ENSMUSG00000058084
AA Change: R142C
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
34 |
309 |
8.8e-54 |
PFAM |
|
Pfam:7TM_GPCR_Srsx
|
38 |
251 |
9.6e-6 |
PFAM |
|
Pfam:7tm_1
|
44 |
291 |
2e-22 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000216434
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000216530
AA Change: R142C
PolyPhen 2
Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000218167
|
| Meta Mutation Damage Score |
0.1404 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.2%
- 20x: 94.7%
|
| Validation Efficiency |
100% (37/37) |
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 35 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Acox2 |
C |
T |
14: 8,251,543 (GRCm38) |
R318H |
probably damaging |
Het |
| Adamts16 |
T |
C |
13: 70,887,010 (GRCm39) |
Y958C |
possibly damaging |
Het |
| Apol7e |
A |
G |
15: 77,601,789 (GRCm39) |
E129G |
probably damaging |
Het |
| Bmp2k |
A |
G |
5: 97,235,010 (GRCm39) |
|
probably benign |
Het |
| Camk2g |
T |
C |
14: 20,814,966 (GRCm39) |
H26R |
probably damaging |
Het |
| Cpn2 |
A |
G |
16: 30,079,336 (GRCm39) |
S122P |
probably damaging |
Het |
| Dhcr24 |
G |
T |
4: 106,443,002 (GRCm39) |
G346C |
probably damaging |
Het |
| Egf |
G |
A |
3: 129,491,442 (GRCm39) |
R351* |
probably null |
Het |
| Exosc10 |
T |
A |
4: 148,648,322 (GRCm39) |
Y260* |
probably null |
Het |
| Fabp3 |
C |
T |
4: 130,206,180 (GRCm39) |
T57I |
probably benign |
Het |
| Fam83h |
C |
T |
15: 75,874,499 (GRCm39) |
R946K |
probably benign |
Het |
| Fbxo30 |
A |
G |
10: 11,165,856 (GRCm39) |
S193G |
probably damaging |
Het |
| Grik3 |
T |
C |
4: 125,587,747 (GRCm39) |
|
probably benign |
Het |
| Gtf3c6 |
A |
T |
10: 40,130,317 (GRCm39) |
|
probably null |
Het |
| Hivep1 |
T |
C |
13: 42,311,203 (GRCm39) |
S1148P |
probably benign |
Het |
| Hmgb2 |
T |
A |
8: 57,966,388 (GRCm39) |
S121T |
probably benign |
Het |
| Hyal2 |
T |
C |
9: 107,449,320 (GRCm39) |
S359P |
probably damaging |
Het |
| Itgbl1 |
A |
G |
14: 124,077,977 (GRCm39) |
T156A |
possibly damaging |
Het |
| Lrrk2 |
C |
A |
15: 91,640,119 (GRCm39) |
Q1555K |
probably benign |
Het |
| Myom1 |
T |
C |
17: 71,352,619 (GRCm39) |
V349A |
probably damaging |
Het |
| Naa40 |
A |
T |
19: 7,207,174 (GRCm39) |
|
probably benign |
Het |
| Ncam2 |
A |
G |
16: 81,231,698 (GRCm39) |
Y54C |
probably damaging |
Het |
| Nemf |
C |
T |
12: 69,378,723 (GRCm39) |
S533N |
probably damaging |
Het |
| Nkain1 |
T |
A |
4: 130,537,296 (GRCm38) |
I80F |
probably damaging |
Het |
| Or10ak12 |
A |
G |
4: 118,666,452 (GRCm39) |
V203A |
probably damaging |
Het |
| Or2ag13 |
G |
A |
7: 106,473,302 (GRCm39) |
T50I |
probably benign |
Het |
| Pde3b |
T |
C |
7: 114,126,102 (GRCm39) |
S779P |
probably damaging |
Het |
| Prkar2a |
A |
G |
9: 108,605,467 (GRCm39) |
Y175C |
probably damaging |
Het |
| Slc44a5 |
T |
C |
3: 153,967,031 (GRCm39) |
|
probably benign |
Het |
| Smgc |
T |
A |
15: 91,744,460 (GRCm39) |
|
probably benign |
Het |
| Tasp1 |
T |
A |
2: 139,793,421 (GRCm39) |
S252C |
probably damaging |
Het |
| Tgfbrap1 |
A |
T |
1: 43,098,314 (GRCm39) |
Y489N |
probably damaging |
Het |
| Topors |
C |
T |
4: 40,262,123 (GRCm39) |
R387H |
probably benign |
Het |
| Ttn |
A |
G |
2: 76,619,963 (GRCm39) |
S15902P |
probably damaging |
Het |
| Ttn |
T |
C |
2: 76,680,647 (GRCm39) |
|
probably null |
Het |
|
| Other mutations in Or9k2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL03244:Or9k2
|
APN |
10 |
129,998,269 (GRCm39) |
nonsense |
probably null |
|
|
R1120:Or9k2
|
UTSW |
10 |
129,998,406 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1341:Or9k2
|
UTSW |
10 |
129,999,185 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1754:Or9k2
|
UTSW |
10 |
129,999,033 (GRCm39) |
missense |
probably benign |
0.02 |
|
R2022:Or9k2
|
UTSW |
10 |
129,999,049 (GRCm39) |
missense |
probably benign |
0.00 |
|
R2027:Or9k2
|
UTSW |
10 |
129,998,604 (GRCm39) |
missense |
probably benign |
0.00 |
|
R3838:Or9k2
|
UTSW |
10 |
129,998,275 (GRCm39) |
nonsense |
probably null |
|
|
R4737:Or9k2
|
UTSW |
10 |
129,998,707 (GRCm39) |
missense |
probably benign |
0.01 |
|
R5166:Or9k2
|
UTSW |
10 |
129,998,430 (GRCm39) |
missense |
possibly damaging |
0.60 |
|
R5744:Or9k2
|
UTSW |
10 |
129,998,661 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R5899:Or9k2
|
UTSW |
10 |
129,998,542 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7754:Or9k2
|
UTSW |
10 |
129,998,698 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8098:Or9k2
|
UTSW |
10 |
129,998,916 (GRCm39) |
missense |
probably benign |
0.32 |
|
R9393:Or9k2
|
UTSW |
10 |
129,999,016 (GRCm39) |
missense |
probably benign |
0.39 |
|
X0026:Or9k2
|
UTSW |
10 |
129,998,600 (GRCm39) |
missense |
probably benign |
0.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- TCGTATCTTTAGAACAGTGGACAC -3'
(R):5'- AGCAACTTTTGGACAGAGAGC -3'
Sequencing Primer
(F):5'- CAATGATGACTGTGATAGTTGGTAAG -3'
(R):5'- GAGCAAGTCTATCTCATTTGCAGGC -3'
|
| Posted On |
2015-04-06 |
Incidental Mutation