Incidental Mutation 'IGL00929:Spag6l'
| ID |
278083 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Spag6l
|
| Ensembl Gene |
ENSMUSG00000022783 |
| Gene Name |
sperm associated antigen 6-like |
| Synonyms |
PF16, Spag6 |
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.345)
|
| Stock # |
IGL00929
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
16 |
| Chromosomal Location |
16570880-16647227 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
C to T
at 16584877 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Alanine to Threonine
at position 424
(A424T)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000023468
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000023468]
|
| AlphaFold |
Q9JLI7 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000023468
AA Change: A424T
PolyPhen 2
Score 0.517 (Sensitivity: 0.88; Specificity: 0.90)
|
| SMART Domains |
Protein: ENSMUSP00000023468
Gene: ENSMUSG00000022783
AA Change: A424T
| Domain | Start | End | E-Value | Type |
|---|
|
ARM
|
30 |
70 |
2.26e-3 |
SMART |
|
Blast:ARM
|
72 |
112 |
3e-15 |
BLAST |
|
ARM
|
114 |
154 |
3e-8 |
SMART |
|
ARM
|
156 |
196 |
4.91e-4 |
SMART |
|
ARM
|
198 |
238 |
1.03e-6 |
SMART |
|
ARM
|
240 |
280 |
3.13e0 |
SMART |
|
ARM
|
282 |
322 |
4.82e1 |
SMART |
|
ARM
|
323 |
365 |
7.34e-3 |
SMART |
|
Blast:ARM
|
367 |
409 |
7e-16 |
BLAST |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000154624
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The correlation of anti-sperm antibodies with cases of unexplained infertility implicates a role for these antibodies in blocking fertilization. Improved diagnosis and treatment of immunologic infertility, as well as identification of proteins for targeted contraception, are dependent on the identification and characterization of relevant sperm antigens. The protein expressed by this gene is recognized by anti-sperm antibodies from an infertile man. This protein localizes to the tail of permeabilized human sperm and contains eight contiguous armadillo repeats, a motif known to mediate protein-protein interactions. Studies in mice suggest that this protein is involved in sperm flagellar motility and maintenance of the structural integrity of mature sperm. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2011]
PHENOTYPE: Many homozygotes for a targeted null mutation exhibit reduced growth, hydrocephaly, and lethality by 8 weeks of age. Surviving males have sperm defects and are infertile, while females show reduced fertility. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 27 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Acp1 |
A |
T |
12: 30,954,899 (GRCm39) |
H67Q |
probably damaging |
Het |
| Ankrd13b |
A |
G |
11: 77,363,578 (GRCm39) |
S247P |
probably damaging |
Het |
| Aqp4 |
C |
T |
18: 15,526,656 (GRCm39) |
G275E |
probably benign |
Het |
| Arhgef15 |
A |
T |
11: 68,844,928 (GRCm39) |
L223Q |
probably damaging |
Het |
| Asb13 |
A |
G |
13: 3,699,427 (GRCm39) |
Y209C |
probably damaging |
Het |
| Cdk18 |
A |
G |
1: 132,046,257 (GRCm39) |
|
probably null |
Het |
| Cntnap5a |
G |
A |
1: 115,988,004 (GRCm39) |
|
probably null |
Het |
| Cops6 |
A |
G |
5: 138,159,648 (GRCm39) |
M1V |
probably null |
Het |
| Dab2ip |
A |
T |
2: 35,598,889 (GRCm39) |
M137L |
possibly damaging |
Het |
| Hnrnpm |
C |
A |
17: 33,868,876 (GRCm39) |
R517L |
probably damaging |
Het |
| Lemd1 |
A |
G |
1: 132,184,447 (GRCm39) |
D73G |
probably benign |
Het |
| Lpin1 |
G |
A |
12: 16,623,700 (GRCm39) |
S228L |
probably benign |
Het |
| Mtcl3 |
C |
A |
10: 29,024,288 (GRCm39) |
N401K |
probably damaging |
Het |
| Mtmr9 |
A |
G |
14: 63,780,946 (GRCm39) |
L48P |
probably damaging |
Het |
| Ncoa3 |
T |
A |
2: 165,893,529 (GRCm39) |
|
probably null |
Het |
| Ndc1 |
T |
A |
4: 107,246,694 (GRCm39) |
N372K |
probably benign |
Het |
| Ndufa2 |
A |
G |
18: 36,877,228 (GRCm39) |
|
probably benign |
Het |
| Nmt1 |
A |
T |
11: 102,950,902 (GRCm39) |
|
probably null |
Het |
| Or52s1 |
A |
T |
7: 102,861,892 (GRCm39) |
H264L |
probably damaging |
Het |
| Pcdhgb6 |
T |
C |
18: 37,876,758 (GRCm39) |
Y489H |
probably damaging |
Het |
| Rttn |
A |
T |
18: 89,047,059 (GRCm39) |
K907M |
probably damaging |
Het |
| Sos1 |
T |
C |
17: 80,716,025 (GRCm39) |
Y979C |
probably damaging |
Het |
| Stt3b |
A |
T |
9: 115,095,233 (GRCm39) |
I266N |
probably damaging |
Het |
| Tet3 |
A |
G |
6: 83,345,637 (GRCm39) |
L1600P |
probably benign |
Het |
| Tiam1 |
T |
A |
16: 89,591,627 (GRCm39) |
I1358F |
probably damaging |
Het |
| Usp37 |
G |
T |
1: 74,529,313 (GRCm39) |
T122N |
probably benign |
Het |
| Vit |
T |
C |
17: 78,886,830 (GRCm39) |
S153P |
probably damaging |
Het |
|
| Other mutations in Spag6l |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00864:Spag6l
|
APN |
16 |
16,598,597 (GRCm39) |
missense |
probably benign |
0.20 |
|
IGL00928:Spag6l
|
APN |
16 |
16,584,877 (GRCm39) |
missense |
possibly damaging |
0.52 |
|
IGL01793:Spag6l
|
APN |
16 |
16,599,721 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02380:Spag6l
|
APN |
16 |
16,581,033 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
IGL03271:Spag6l
|
APN |
16 |
16,598,592 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0284:Spag6l
|
UTSW |
16 |
16,598,630 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0394:Spag6l
|
UTSW |
16 |
16,598,493 (GRCm39) |
missense |
probably benign |
|
|
R0720:Spag6l
|
UTSW |
16 |
16,584,960 (GRCm39) |
splice site |
probably benign |
|
|
R1205:Spag6l
|
UTSW |
16 |
16,605,171 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1496:Spag6l
|
UTSW |
16 |
16,598,478 (GRCm39) |
splice site |
probably benign |
|
|
R1707:Spag6l
|
UTSW |
16 |
16,598,492 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1926:Spag6l
|
UTSW |
16 |
16,580,921 (GRCm39) |
missense |
probably benign |
0.00 |
|
R2255:Spag6l
|
UTSW |
16 |
16,595,203 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R2330:Spag6l
|
UTSW |
16 |
16,646,949 (GRCm39) |
missense |
probably benign |
|
|
R3755:Spag6l
|
UTSW |
16 |
16,580,884 (GRCm39) |
critical splice donor site |
probably null |
|
|
R3796:Spag6l
|
UTSW |
16 |
16,580,916 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4093:Spag6l
|
UTSW |
16 |
16,646,888 (GRCm39) |
missense |
probably benign |
0.05 |
|
R4324:Spag6l
|
UTSW |
16 |
16,605,099 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4725:Spag6l
|
UTSW |
16 |
16,610,395 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4766:Spag6l
|
UTSW |
16 |
16,595,254 (GRCm39) |
missense |
probably benign |
0.03 |
|
R4877:Spag6l
|
UTSW |
16 |
16,599,622 (GRCm39) |
missense |
possibly damaging |
0.47 |
|
R5753:Spag6l
|
UTSW |
16 |
16,584,831 (GRCm39) |
critical splice donor site |
probably null |
|
|
R5958:Spag6l
|
UTSW |
16 |
16,580,885 (GRCm39) |
critical splice donor site |
probably null |
|
|
R6107:Spag6l
|
UTSW |
16 |
16,599,652 (GRCm39) |
missense |
possibly damaging |
0.56 |
|
R6894:Spag6l
|
UTSW |
16 |
16,601,802 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7329:Spag6l
|
UTSW |
16 |
16,584,883 (GRCm39) |
missense |
probably benign |
|
|
R7634:Spag6l
|
UTSW |
16 |
16,595,278 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R8240:Spag6l
|
UTSW |
16 |
16,580,889 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8464:Spag6l
|
UTSW |
16 |
16,580,898 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R9207:Spag6l
|
UTSW |
16 |
16,598,492 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9682:Spag6l
|
UTSW |
16 |
16,646,981 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
| Posted On |
2015-04-16 |
Incidental Mutation