Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL01380:Stxbp4'

278323

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Stxbp4

Ensembl Gene

ENSMUSG00000020546

Gene Name

syntaxin binding protein 4

Synonyms

6030470M02Rik, Synip

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

IGL01380

Quality Score

Status

Chromosome

Chromosomal Location

90367318-90528910 bp(-) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

A to G at 90512475 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000116191 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020858] [ENSMUST00000107872] [ENSMUST00000107875] [ENSMUST00000132905] [ENSMUST00000143203]

AlphaFold

Q9WV89

Predicted Effect

probably benign
Transcript: ENSMUST00000020858

SMART Domains

Protein: ENSMUSP00000020858
Gene: ENSMUSG00000020546

Domain	Start	End	E-Value	Type
PDZ	29	109	6.13e-10	SMART
low complexity region	131	154	N/A	INTRINSIC
coiled coil region	298	409	N/A	INTRINSIC
low complexity region	504	522	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000107872

SMART Domains

Protein: ENSMUSP00000103504
Gene: ENSMUSG00000020546

Domain	Start	End	E-Value	Type
PDZ	29	109	6.13e-10	SMART
low complexity region	131	154	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000107875

SMART Domains

Protein: ENSMUSP00000103507
Gene: ENSMUSG00000020546

Domain	Start	End	E-Value	Type
PDZ	29	109	6.13e-10	SMART
low complexity region	131	154	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000132905

Predicted Effect

probably benign
Transcript: ENSMUST00000143203

SMART Domains

Protein: ENSMUSP00000116191
Gene: ENSMUSG00000020546

Domain	Start	End	E-Value	Type
PDZ	29	109	6.13e-10	SMART
low complexity region	131	154	N/A	INTRINSIC
coiled coil region	298	409	N/A	INTRINSIC
WW	501	533	1.11e-10	SMART

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aadacl2fm1	A	G	3: 59,840,053 (GRCm39)	T42A	probably benign	Het
Abcc10	C	A	17: 46,634,948 (GRCm39)	V352L	possibly damaging	Het
Ankrd44	A	T	1: 54,766,724 (GRCm39)	M488K	probably benign	Het
Ano8	A	G	8: 71,933,453 (GRCm39)		probably benign	Het
Atp2a1	T	A	7: 126,047,942 (GRCm39)	M623L	possibly damaging	Het
Atxn10	G	T	15: 85,260,896 (GRCm39)	E214*	probably null	Het
Btla	A	C	16: 45,070,716 (GRCm39)	D225A	probably benign	Het
C030048H21Rik	G	A	2: 26,146,659 (GRCm39)	Q1218*	probably null	Het
Cacna1a	A	G	8: 85,285,746 (GRCm39)	Y750C	probably damaging	Het
Ccdc15	A	T	9: 37,187,853 (GRCm39)		probably benign	Het
Ccdc18	T	A	5: 108,328,753 (GRCm39)	I724N	probably damaging	Het
Cluh	T	A	11: 74,556,772 (GRCm39)	F937L	probably benign	Het
Clybl	G	T	14: 122,616,761 (GRCm39)	A259S	probably benign	Het
Cyp4f39	T	G	17: 32,700,832 (GRCm39)	I167S	probably damaging	Het
Dchs1	T	A	7: 105,411,418 (GRCm39)	D1566V	probably damaging	Het
Dnah3	C	T	7: 119,525,787 (GRCm39)	A3867T	probably damaging	Het
Dtwd1	T	A	2: 126,001,847 (GRCm39)	L189Q	probably benign	Het
Dusp10	T	C	1: 183,801,211 (GRCm39)	I326T	possibly damaging	Het
Eaf1	T	A	14: 31,219,767 (GRCm39)		probably benign	Het
Eif3c	C	T	7: 126,163,585 (GRCm39)		probably benign	Het
Fam169a	C	T	13: 97,228,459 (GRCm39)	T44M	probably damaging	Het
Fam184a	T	C	10: 53,570,782 (GRCm39)		probably benign	Het
Fam25a	C	T	14: 34,075,655 (GRCm39)	A46T	probably null	Het
Gckr	A	G	5: 31,456,977 (GRCm39)		probably benign	Het
Gfra2	G	T	14: 71,204,586 (GRCm39)		probably benign	Het
Gm8237	A	T	14: 5,863,703 (GRCm38)		probably null	Het
H2-Eb2	G	T	17: 34,554,783 (GRCm39)	L228F	probably benign	Het
Igf2r	T	C	17: 12,914,261 (GRCm39)	N1736S	probably benign	Het
Izumo1	T	G	7: 45,276,519 (GRCm39)	S361A	probably benign	Het
Klri1	T	C	6: 129,675,761 (GRCm39)	I170V	probably benign	Het
L3mbtl2	C	T	15: 81,555,326 (GRCm39)	A193V	possibly damaging	Het
Lats1	T	A	10: 7,567,544 (GRCm39)	M105K	possibly damaging	Het
Lrpprc	T	C	17: 85,030,158 (GRCm39)	D1080G	probably benign	Het
Lrrc74a	A	T	12: 86,808,496 (GRCm39)	M425L	possibly damaging	Het
Mfsd13a	G	T	19: 46,356,347 (GRCm39)	D151Y	probably damaging	Het
Mst1	G	A	9: 107,961,787 (GRCm39)	E640K	probably damaging	Het
Napsa	T	C	7: 44,236,098 (GRCm39)	V379A	probably damaging	Het
Or1e16	A	T	11: 73,286,017 (GRCm39)	M277K	probably damaging	Het
Or55b4	C	T	7: 102,133,592 (GRCm39)	C245Y	probably damaging	Het
Or7c19	C	A	8: 85,957,775 (GRCm39)	S217Y	probably damaging	Het
Or7c19	A	T	8: 85,957,958 (GRCm39)	Y278F	possibly damaging	Het
Otop3	T	C	11: 115,237,237 (GRCm39)	V567A	probably damaging	Het
Oxsr1	A	T	9: 119,089,167 (GRCm39)		probably benign	Het
Pak2	A	T	16: 31,860,362 (GRCm39)	V167E	probably benign	Het
Pcdhb16	A	G	18: 37,612,498 (GRCm39)	H486R	probably benign	Het
Plekha5	C	T	6: 140,516,042 (GRCm39)		probably benign	Het
Rbm6	T	C	9: 107,665,548 (GRCm39)	D616G	probably damaging	Het
Sf3b1	T	C	1: 55,027,108 (GRCm39)	Y1249C	probably damaging	Het
Sipa1l3	T	C	7: 29,030,797 (GRCm39)	H534R	possibly damaging	Het
Slco1c1	T	C	6: 141,485,777 (GRCm39)	Y136H	probably damaging	Het
Smarca4	A	G	9: 21,590,369 (GRCm39)	M1333V	probably benign	Het
Smc4	A	G	3: 68,933,161 (GRCm39)	D54G	probably damaging	Het
Spag5	T	A	11: 78,195,443 (GRCm39)	V250E	possibly damaging	Het
Suv39h2	T	A	2: 3,465,296 (GRCm39)		probably benign	Het
Taar8b	T	A	10: 23,968,005 (GRCm39)	H63L	probably damaging	Het
Tex2	G	A	11: 106,435,141 (GRCm39)	Q264*	probably null	Het
Thnsl2	A	C	6: 71,115,740 (GRCm39)	S156A	probably benign	Het
Tmtc4	G	T	14: 123,163,366 (GRCm39)		probably benign	Het
Usp25	T	C	16: 76,890,566 (GRCm39)	L758P	probably benign	Het
Zfyve1	G	A	12: 83,599,281 (GRCm39)	R144C	probably damaging	Het
Zpld1	A	G	16: 55,072,133 (GRCm39)	V42A	probably damaging	Het

Other mutations in Stxbp4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00988:Stxbp4	APN	11	90,426,338 (GRCm39)	missense	probably benign	0.00
IGL01312:Stxbp4	APN	11	90,512,475 (GRCm39)	splice site	probably benign
IGL01313:Stxbp4	APN	11	90,512,475 (GRCm39)	splice site	probably benign
IGL01314:Stxbp4	APN	11	90,512,475 (GRCm39)	splice site	probably benign
IGL01316:Stxbp4	APN	11	90,512,475 (GRCm39)	splice site	probably benign
IGL01377:Stxbp4	APN	11	90,512,475 (GRCm39)	splice site	probably benign
IGL01385:Stxbp4	APN	11	90,431,074 (GRCm39)	missense	possibly damaging	0.95
IGL01408:Stxbp4	APN	11	90,512,475 (GRCm39)	splice site	probably benign
IGL02573:Stxbp4	APN	11	90,431,095 (GRCm39)	missense	probably damaging	0.99
IGL02707:Stxbp4	APN	11	90,428,759 (GRCm39)	missense	probably benign	0.00
IGL02809:Stxbp4	APN	11	90,491,010 (GRCm39)	critical splice donor site	probably null
IGL02900:Stxbp4	APN	11	90,497,861 (GRCm39)	missense	probably benign	0.03
IGL03177:Stxbp4	APN	11	90,462,579 (GRCm39)	missense	probably benign	0.01
IGL03397:Stxbp4	APN	11	90,431,060 (GRCm39)	missense	probably damaging	1.00
IGL02799:Stxbp4	UTSW	11	90,385,426 (GRCm39)	critical splice donor site	probably null
IGL03134:Stxbp4	UTSW	11	90,498,010 (GRCm39)	missense	probably damaging	0.98
R0005:Stxbp4	UTSW	11	90,439,743 (GRCm39)	missense	possibly damaging	0.78
R0487:Stxbp4	UTSW	11	90,483,186 (GRCm39)	missense	probably benign	0.00
R0930:Stxbp4	UTSW	11	90,512,526 (GRCm39)	start codon destroyed	probably null	0.99
R1633:Stxbp4	UTSW	11	90,430,986 (GRCm39)	splice site	probably benign
R3785:Stxbp4	UTSW	11	90,426,441 (GRCm39)	critical splice acceptor site	probably null
R4359:Stxbp4	UTSW	11	90,385,470 (GRCm39)	nonsense	probably null
R4591:Stxbp4	UTSW	11	90,485,606 (GRCm39)	missense	probably benign	0.33
R4756:Stxbp4	UTSW	11	90,498,197 (GRCm39)	missense	probably damaging	1.00
R5095:Stxbp4	UTSW	11	90,439,801 (GRCm39)	missense	probably benign	0.00
R5870:Stxbp4	UTSW	11	90,428,782 (GRCm39)	missense	possibly damaging	0.89
R6268:Stxbp4	UTSW	11	90,431,027 (GRCm39)	nonsense	probably null
R6460:Stxbp4	UTSW	11	90,497,811 (GRCm39)	missense	probably benign	0.35
R6479:Stxbp4	UTSW	11	90,510,013 (GRCm39)	missense	probably damaging	0.99
R7139:Stxbp4	UTSW	11	90,497,835 (GRCm39)	nonsense	probably null
R7349:Stxbp4	UTSW	11	90,482,937 (GRCm39)	splice site	probably null
R7481:Stxbp4	UTSW	11	90,485,639 (GRCm39)	missense	possibly damaging	0.94
R7812:Stxbp4	UTSW	11	90,485,654 (GRCm39)	missense	probably damaging	1.00
R8903:Stxbp4	UTSW	11	90,426,267 (GRCm39)	missense	unknown
R9023:Stxbp4	UTSW	11	90,426,249 (GRCm39)	missense	unknown
R9100:Stxbp4	UTSW	11	90,426,320 (GRCm39)	missense	possibly damaging	0.77
V8831:Stxbp4	UTSW	11	90,371,497 (GRCm39)	missense	probably benign	0.34
Z1176:Stxbp4	UTSW	11	90,371,497 (GRCm39)	missense	probably benign	0.34
Z1177:Stxbp4	UTSW	11	90,490,972 (GRCm39)	missense	probably benign	0.01
Z1177:Stxbp4	UTSW	11	90,483,157 (GRCm39)	critical splice donor site	probably null
Z1177:Stxbp4	UTSW	11	90,371,497 (GRCm39)	missense	probably benign	0.34

Posted On

2015-04-16