Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL01899:Pisd'

279046

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Pisd

Ensembl Gene

ENSMUSG00000023452

Gene Name

phosphatidylserine decarboxylase

Synonyms

9030221M09Rik

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

IGL01899

Quality Score

Status

Chromosome

Chromosomal Location

32893645-32942990 bp(-) (GRCm39)

Type of Mutation

splice site (5 bp from exon)

DNA Base Change (assembly)

C to A at 32896476 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000124923 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000061895] [ENSMUST00000061895] [ENSMUST00000071829] [ENSMUST00000071829] [ENSMUST00000120591] [ENSMUST00000120591] [ENSMUST00000135248] [ENSMUST00000142957] [ENSMUST00000144673] [ENSMUST00000144673] [ENSMUST00000200390] [ENSMUST00000197787] [ENSMUST00000202283]

AlphaFold

Q8BSF4

Predicted Effect

probably null
Transcript: ENSMUST00000061895

SMART Domains

Protein: ENSMUSP00000051438
Gene: ENSMUSG00000023452

Domain	Start	End	E-Value	Type
Pfam:PS_Dcarbxylase	162	405	1.1e-71	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000061895

SMART Domains

Protein: ENSMUSP00000051438
Gene: ENSMUSG00000023452

Domain	Start	End	E-Value	Type
Pfam:PS_Dcarbxylase	162	405	1.1e-71	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000071829

SMART Domains

Protein: ENSMUSP00000071732
Gene: ENSMUSG00000023452

Domain	Start	End	E-Value	Type
Pfam:PS_Dcarbxylase	131	260	3.9e-35	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000071829

SMART Domains

Protein: ENSMUSP00000071732
Gene: ENSMUSG00000023452

Domain	Start	End	E-Value	Type
Pfam:PS_Dcarbxylase	131	260	3.9e-35	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000119864

Predicted Effect

probably null
Transcript: ENSMUST00000120591

SMART Domains

Protein: ENSMUSP00000112573
Gene: ENSMUSG00000023452

Domain	Start	End	E-Value	Type
Pfam:PS_Dcarbxylase	131	374	1.1e-75	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000120591

SMART Domains

Protein: ENSMUSP00000112573
Gene: ENSMUSG00000023452

Domain	Start	End	E-Value	Type
Pfam:PS_Dcarbxylase	131	374	1.1e-75	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000135248

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000138360

Predicted Effect

probably null
Transcript: ENSMUST00000142779

SMART Domains

Protein: ENSMUSP00000122705
Gene: ENSMUSG00000023452

Domain	Start	End	E-Value	Type
Pfam:PS_Dcarbxylase	153	270	1.7e-33	PFAM
Pfam:PS_Dcarbxylase	268	358	2.1e-19	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000142779

SMART Domains

Protein: ENSMUSP00000122705
Gene: ENSMUSG00000023452

Domain	Start	End	E-Value	Type
Pfam:PS_Dcarbxylase	153	270	1.7e-33	PFAM
Pfam:PS_Dcarbxylase	268	358	2.1e-19	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000142957

Predicted Effect

probably null
Transcript: ENSMUST00000144673

SMART Domains

Protein: ENSMUSP00000124923
Gene: ENSMUSG00000093574

Domain	Start	End	E-Value	Type
Pfam:Tantalus	158	193	1.2e-15	PFAM
Pfam:PS_Dcarbxylase	332	575	2.1e-71	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000144673

SMART Domains

Protein: ENSMUSP00000124923
Gene: ENSMUSG00000093574

Domain	Start	End	E-Value	Type
Pfam:Tantalus	158	193	1.2e-15	PFAM
Pfam:PS_Dcarbxylase	332	575	2.1e-71	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000196545

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000201314

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000201980

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000202224

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000202641

Predicted Effect

probably benign
Transcript: ENSMUST00000200390

Predicted Effect

probably benign
Transcript: ENSMUST00000197787

Predicted Effect

probably benign
Transcript: ENSMUST00000202283

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene catalyzes the conversion of phosphatidylserine to phosphatidylethanolamine in the inner mitochondrial membrane. The encoded protein is active in phospholipid metabolism and interorganelle trafficking of phosphatidylserine. [provided by RefSeq, May 2016]
PHENOTYPE: Mice homozygous for a null mutation in this gene display embryogenesis defects such as abnormal trophoblast development, abnormal extraembronic tissue morphology and abnormal mitochondrial morphology. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 25 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Bicral	G	A	17: 47,135,600 (GRCm39)	P537S	probably benign	Het
Cadm1	A	G	9: 47,721,389 (GRCm39)	T260A	probably damaging	Het
Ddr2	C	A	1: 169,811,991 (GRCm39)	G744C	probably damaging	Het
Epha6	A	C	16: 59,659,666 (GRCm39)	N817K	probably benign	Het
Far2	A	G	6: 148,047,527 (GRCm39)	K69E	probably benign	Het
Fasn	G	A	11: 120,710,975 (GRCm39)		probably benign	Het
Ficd	A	G	5: 113,875,158 (GRCm39)	T76A	probably benign	Het
Flot1	A	T	17: 36,141,573 (GRCm39)	I327L	probably benign	Het
Fscn3	A	T	6: 28,436,078 (GRCm39)	E458V	probably damaging	Het
Gm21738	G	A	14: 19,416,979 (GRCm38)	S144L	probably benign	Het
Lepr	A	G	4: 101,637,184 (GRCm39)	E691G	possibly damaging	Het
Ly9	T	A	1: 171,434,815 (GRCm39)	Q26L	probably damaging	Het
Or5p60	T	C	7: 107,724,048 (GRCm39)	T141A	probably benign	Het
Plxna2	C	T	1: 194,433,796 (GRCm39)	S615L	probably damaging	Het
Ppfia2	T	C	10: 106,751,612 (GRCm39)		probably null	Het
Ppox	A	G	1: 171,104,655 (GRCm39)	V470A	probably benign	Het
Rptor	T	A	11: 119,748,279 (GRCm39)	S4T	probably benign	Het
Sf3a1	T	A	11: 4,121,063 (GRCm39)	I218N	probably damaging	Het
Stxbp5l	T	C	16: 37,020,954 (GRCm39)	S647G	probably benign	Het
Sytl1	C	T	4: 132,986,167 (GRCm39)		probably null	Het
Tbx6	C	T	7: 126,383,704 (GRCm39)		probably benign	Het
Thg1l	C	A	11: 45,845,018 (GRCm39)	R78L	probably damaging	Het
Tlr1	T	C	5: 65,084,359 (GRCm39)	K73E	probably damaging	Het
Trpm1	T	A	7: 63,884,742 (GRCm39)	F808I	probably benign	Het
Vmn2r129	C	T	4: 156,690,549 (GRCm39)		noncoding transcript	Het

Other mutations in Pisd

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00539:Pisd	APN	5	32,895,756 (GRCm39)	missense	probably benign	0.02
IGL00540:Pisd	APN	5	32,895,756 (GRCm39)	missense	probably benign	0.02
IGL00577:Pisd	APN	5	32,895,756 (GRCm39)	missense	probably benign	0.02
IGL00580:Pisd	APN	5	32,895,756 (GRCm39)	missense	probably benign	0.02
IGL00590:Pisd	APN	5	32,895,756 (GRCm39)	missense	probably benign	0.02
IGL00990:Pisd	APN	5	32,896,702 (GRCm39)	missense	probably benign	0.24
IGL01908:Pisd	APN	5	32,896,476 (GRCm39)	splice site	probably null
IGL01928:Pisd	APN	5	32,896,476 (GRCm39)	splice site	probably null
IGL01931:Pisd	APN	5	32,896,476 (GRCm39)	splice site	probably null
IGL01935:Pisd	APN	5	32,896,476 (GRCm39)	splice site	probably null
IGL01948:Pisd	APN	5	32,896,476 (GRCm39)	splice site	probably null
IGL01952:Pisd	APN	5	32,896,476 (GRCm39)	splice site	probably null
IGL02195:Pisd	APN	5	32,894,659 (GRCm39)	missense	probably damaging	1.00
shandong	UTSW	5	32,922,140 (GRCm39)	missense	possibly damaging	0.94
R0674:Pisd	UTSW	5	32,931,781 (GRCm39)	missense	probably benign	0.00
R0840:Pisd	UTSW	5	32,894,656 (GRCm39)	missense	probably damaging	1.00
R1976:Pisd	UTSW	5	32,896,209 (GRCm39)	missense	probably damaging	1.00
R1986:Pisd	UTSW	5	32,894,672 (GRCm39)	missense	probably damaging	1.00
R2044:Pisd	UTSW	5	32,922,140 (GRCm39)	missense	possibly damaging	0.94
R5705:Pisd	UTSW	5	32,894,707 (GRCm39)	missense	probably benign	0.14
R5756:Pisd	UTSW	5	32,895,842 (GRCm39)	missense	probably damaging	1.00
R6249:Pisd	UTSW	5	32,896,188 (GRCm39)	missense	probably damaging	1.00
R6389:Pisd	UTSW	5	32,922,191 (GRCm39)	missense	probably damaging	1.00
R6913:Pisd	UTSW	5	32,894,773 (GRCm39)	missense	probably damaging	1.00
R7143:Pisd	UTSW	5	32,895,846 (GRCm39)	missense	possibly damaging	0.73
R7571:Pisd	UTSW	5	32,894,681 (GRCm39)	missense	probably damaging	1.00
R7626:Pisd	UTSW	5	32,898,032 (GRCm39)	missense	probably benign	0.04
R8903:Pisd	UTSW	5	32,895,755 (GRCm39)	missense	probably benign	0.18
R9310:Pisd	UTSW	5	32,894,784 (GRCm39)	missense	possibly damaging	0.95

Posted On

2015-04-16