Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02108:Grsf1'

280049

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Grsf1

Ensembl Gene

ENSMUSG00000044221

Gene Name

G-rich RNA sequence binding factor 1

Synonyms

D5Wsu31e

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

IGL02108

Quality Score

Status

Chromosome

Chromosomal Location

88807307-88824030 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 88813762 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Glutamine at position 329 (R329Q)

Ref Sequence

ENSEMBL: ENSMUSP00000077972 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000078945] [ENSMUST00000113234] [ENSMUST00000153565]

AlphaFold

Q8C5Q4

Predicted Effect

probably benign
Transcript: ENSMUST00000078945
AA Change: R329Q

PolyPhen 2 Score 0.348 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000077972
Gene: ENSMUSG00000044221
AA Change: R329Q

Domain	Start	End	E-Value	Type
low complexity region	13	24	N/A	INTRINSIC
low complexity region	45	60	N/A	INTRINSIC
low complexity region	64	101	N/A	INTRINSIC
low complexity region	124	139	N/A	INTRINSIC
RRM	150	224	1.65e-6	SMART
RRM	250	321	1.79e-11	SMART
RRM	401	471	1.54e-6	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000113234
AA Change: R212Q

PolyPhen 2 Score 0.259 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000108860
Gene: ENSMUSG00000044221
AA Change: R212Q

Domain	Start	End	E-Value	Type
low complexity region	7	22	N/A	INTRINSIC
RRM	33	107	1.65e-6	SMART
RRM	133	204	1.79e-11	SMART
RRM	284	354	1.54e-6	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130408

Predicted Effect

probably benign
Transcript: ENSMUST00000153565
AA Change: R131Q

PolyPhen 2 Score 0.007 (Sensitivity: 0.96; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000123051
Gene: ENSMUSG00000044221
AA Change: R131Q

Domain	Start	End	E-Value	Type
internal_repeat_1	2	33	5.45e-5	PROSPERO
RRM	52	123	1.79e-11	SMART

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a cellular protein that binds RNAs containing the G-rich element. The protein is localized in the cytoplasm, and has been shown to stimulate translation of viral mRNAs in vitro. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

Allele List at MGI

All alleles(4) : Gene trapped(4)

Other mutations in this stock

Total: 48 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam29	T	C	8: 56,325,346 (GRCm39)	I369M	probably damaging	Het
Aff1	T	G	5: 103,958,975 (GRCm39)		probably null	Het
Arid1a	G	T	4: 133,407,827 (GRCm39)	P2227T	unknown	Het
Atp12a	A	T	14: 56,621,525 (GRCm39)	D720V	possibly damaging	Het
Auh	T	C	13: 53,043,133 (GRCm39)		probably benign	Het
Bptf	C	A	11: 106,965,814 (GRCm39)	V1012L	probably benign	Het
Cbr1	T	C	16: 93,407,087 (GRCm39)	F268L	probably benign	Het
Ccdc190	A	G	1: 169,761,555 (GRCm39)	D219G	probably damaging	Het
Ccnb1	C	T	13: 100,917,665 (GRCm39)		probably null	Het
Cdh19	G	T	1: 110,817,461 (GRCm39)	S760R	probably benign	Het
Cecr2	G	A	6: 120,739,519 (GRCm39)		probably null	Het
Chid1	A	T	7: 141,112,841 (GRCm39)	M1K	probably null	Het
Dzank1	T	C	2: 144,348,143 (GRCm39)	T208A	probably benign	Het
Ecm2	T	A	13: 49,671,920 (GRCm39)	Y140*	probably null	Het
Enox2	A	G	X: 48,102,393 (GRCm39)	L533S	possibly damaging	Het
Fntb	A	G	12: 76,934,631 (GRCm39)	E167G	possibly damaging	Het
Gpihbp1	T	C	15: 75,469,461 (GRCm39)	V92A	probably benign	Het
Gtpbp4	T	A	13: 9,035,249 (GRCm39)	D370V	probably benign	Het
H2ac4	T	C	13: 23,935,207 (GRCm39)	V31A	probably benign	Het
Klhl14	T	A	18: 21,690,977 (GRCm39)	Y491F	probably damaging	Het
Lamb3	A	T	1: 193,014,530 (GRCm39)	Q563L	probably damaging	Het
Lcn2	A	T	2: 32,277,617 (GRCm39)	L124Q	probably damaging	Het
Mbl1	T	C	14: 40,875,608 (GRCm39)	S21P	possibly damaging	Het
Myrip	G	A	9: 120,296,631 (GRCm39)		probably null	Het
Nmur2	T	C	11: 55,931,190 (GRCm39)	T174A	probably benign	Het
Odf1	C	A	15: 38,226,623 (GRCm39)	Y174*	probably null	Het
Optn	A	G	2: 5,036,084 (GRCm39)	V466A	possibly damaging	Het
Or5m12	A	T	2: 85,734,494 (GRCm39)	D301E	possibly damaging	Het
Or8b9	T	A	9: 37,766,234 (GRCm39)	V40E	possibly damaging	Het
Or8g54	A	T	9: 39,706,808 (GRCm39)	I46F	probably damaging	Het
Pde9a	G	A	17: 31,680,667 (GRCm39)	S316N	probably benign	Het
Phf3	A	T	1: 30,869,032 (GRCm39)	I672K	probably damaging	Het
Pklr	A	T	3: 89,044,710 (GRCm39)	I63F	probably damaging	Het
Plet1	T	C	9: 50,410,387 (GRCm39)		probably benign	Het
Pp2d1	T	A	17: 53,822,433 (GRCm39)	D211V	probably damaging	Het
Ppp6r3	A	T	19: 3,542,494 (GRCm39)	W384R	probably damaging	Het
Prdm11	T	C	2: 92,806,048 (GRCm39)	I301V	probably damaging	Het
Prkar1a	C	T	11: 109,558,351 (GRCm39)	R357C	probably damaging	Het
Ptchd1	T	C	X: 154,356,548 (GRCm39)	T886A	probably damaging	Het
Ptpre	A	T	7: 135,260,831 (GRCm39)	E156V	possibly damaging	Het
Ptprq	T	C	10: 107,482,478 (GRCm39)	T1032A	probably damaging	Het
Rras2	A	G	7: 113,659,623 (GRCm39)	I47T	probably damaging	Het
Setdb2	C	T	14: 59,639,764 (GRCm39)	R709Q	probably damaging	Het
Sh3rf3	T	A	10: 58,971,650 (GRCm39)	V826E	probably damaging	Het
Tmem127	T	A	2: 127,099,026 (GRCm39)	S132T	probably damaging	Het
Tnrc6c	C	A	11: 117,612,025 (GRCm39)	P221Q	probably benign	Het
Tstd3	A	T	4: 21,759,366 (GRCm39)		probably benign	Het
Usp46	T	G	5: 74,189,867 (GRCm39)	T55P	probably damaging	Het

Other mutations in Grsf1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00421:Grsf1	APN	5	88,818,137 (GRCm39)	missense	probably damaging	1.00
IGL01505:Grsf1	APN	5	88,820,608 (GRCm39)	nonsense	probably null
IGL02116:Grsf1	APN	5	88,818,033 (GRCm39)	critical splice donor site	probably null
IGL02713:Grsf1	APN	5	88,820,589 (GRCm39)	missense	probably damaging	1.00
IGL02881:Grsf1	APN	5	88,821,689 (GRCm39)	missense	probably damaging	1.00
R0336:Grsf1	UTSW	5	88,811,012 (GRCm39)	missense	probably damaging	0.96
R1381:Grsf1	UTSW	5	88,813,723 (GRCm39)	missense	probably benign	0.10
R1398:Grsf1	UTSW	5	88,813,706 (GRCm39)	missense	probably benign	0.03
R2136:Grsf1	UTSW	5	88,820,517 (GRCm39)	missense	probably benign	0.05
R2398:Grsf1	UTSW	5	88,821,695 (GRCm39)	missense	probably damaging	1.00
R4181:Grsf1	UTSW	5	88,812,015 (GRCm39)	missense	probably benign	0.00
R4182:Grsf1	UTSW	5	88,812,015 (GRCm39)	missense	probably benign	0.00
R4183:Grsf1	UTSW	5	88,812,015 (GRCm39)	missense	probably benign	0.00
R4184:Grsf1	UTSW	5	88,812,015 (GRCm39)	missense	probably benign	0.00
R5315:Grsf1	UTSW	5	88,821,634 (GRCm39)	start gained	probably benign
R6246:Grsf1	UTSW	5	88,810,451 (GRCm39)	missense	possibly damaging	0.81
R7359:Grsf1	UTSW	5	88,813,423 (GRCm39)	splice site	probably null
R7381:Grsf1	UTSW	5	88,813,666 (GRCm39)	missense	probably benign	0.02
R7430:Grsf1	UTSW	5	88,811,086 (GRCm39)	missense	possibly damaging	0.67
R7703:Grsf1	UTSW	5	88,819,150 (GRCm39)	missense	probably damaging	1.00
R7838:Grsf1	UTSW	5	88,823,523 (GRCm39)	start gained	probably benign
R8013:Grsf1	UTSW	5	88,823,615 (GRCm39)	critical splice donor site	probably null
R9334:Grsf1	UTSW	5	88,820,469 (GRCm39)	missense	probably damaging	0.99
YA93:Grsf1	UTSW	5	88,821,594 (GRCm39)	missense	probably damaging	1.00

Posted On

2015-04-16