Incidental Mutation 'IGL02141:Lrit2'
ID 281574
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Lrit2
Ensembl Gene ENSMUSG00000043418
Gene Name leucine-rich repeat, immunoglobulin-like and transmembrane domains 2
Synonyms A930010E21Rik, Lrrc22
Accession Numbers
Essential gene? Probably non essential (E-score: 0.067) question?
Stock # IGL02141
Quality Score
Status
Chromosome 14
Chromosomal Location 36789886-36795700 bp(+) (GRCm39)
Type of Mutation unclassified
DNA Base Change (assembly) T to C at 36790031 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000113964 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000057176] [ENSMUST00000120052]
AlphaFold Q6PFC5
Predicted Effect probably benign
Transcript: ENSMUST00000057176
SMART Domains Protein: ENSMUSP00000056642
Gene: ENSMUSG00000043418

DomainStartEndE-ValueType
signal peptide 1 19 N/A INTRINSIC
LRRNT 23 59 7.74e-2 SMART
LRR 78 101 9.96e-1 SMART
LRR_TYP 102 125 8.94e-3 SMART
LRR 126 149 2.03e1 SMART
LRR_TYP 150 173 7.67e-2 SMART
LRRCT 200 251 7.12e-7 SMART
IGc2 265 334 2.05e-9 SMART
FN3 362 443 5.94e0 SMART
transmembrane domain 463 485 N/A INTRINSIC
low complexity region 538 546 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000120052
SMART Domains Protein: ENSMUSP00000113964
Gene: ENSMUSG00000041044

DomainStartEndE-ValueType
signal peptide 1 21 N/A INTRINSIC
LRRNT 22 63 1.97e-3 SMART
LRR 82 105 1.03e1 SMART
LRR 106 129 3e1 SMART
LRR 130 152 1.12e1 SMART
LRR_TYP 154 177 4.47e-3 SMART
LRRCT 201 253 2.04e-7 SMART
IGc2 267 336 6.55e-8 SMART
FN3 429 506 2.22e0 SMART
transmembrane domain 531 553 N/A INTRINSIC
low complexity region 581 595 N/A INTRINSIC
low complexity region 597 608 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000224104
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 57 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700001J03Rik C T 5: 146,120,275 (GRCm39) A188T probably benign Het
2310022B05Rik A T 8: 125,364,645 (GRCm39) probably benign Het
Atf6b C A 17: 34,872,251 (GRCm39) H539Q probably benign Het
Bmal2 T A 6: 146,729,593 (GRCm39) probably benign Het
Bpifb5 G T 2: 154,071,477 (GRCm39) probably null Het
Cep89 T A 7: 35,120,349 (GRCm39) M377K probably damaging Het
Clpx G T 9: 65,219,400 (GRCm39) probably null Het
Cops5 T C 1: 10,105,342 (GRCm39) K47E probably damaging Het
Cryba2 T C 1: 74,931,943 (GRCm39) N35S probably benign Het
Ddx27 A G 2: 166,862,443 (GRCm39) K162E possibly damaging Het
Dhx36 A G 3: 62,401,310 (GRCm39) S319P probably benign Het
Dram2 A G 3: 106,479,012 (GRCm39) probably benign Het
Eci2 T A 13: 35,162,656 (GRCm39) T300S probably benign Het
Egf C A 3: 129,533,631 (GRCm39) G70* probably null Het
Eif5b T C 1: 38,071,403 (GRCm39) V444A probably benign Het
Elf3 T C 1: 135,185,445 (GRCm39) D23G possibly damaging Het
Epb41l4b A T 4: 57,103,422 (GRCm39) probably null Het
Fam167a T A 14: 63,689,708 (GRCm39) S2T probably benign Het
Flrt3 A G 2: 140,502,608 (GRCm39) V340A probably damaging Het
Gimap3 T C 6: 48,742,312 (GRCm39) E206G probably benign Het
Gp6 T C 7: 4,397,103 (GRCm39) probably benign Het
Gpr158 A T 2: 21,788,101 (GRCm39) M581L probably damaging Het
Hapln3 A G 7: 78,767,893 (GRCm39) V167A probably damaging Het
Hnrnpll G A 17: 80,358,142 (GRCm39) T203I probably benign Het
Ighv3-6 A G 12: 114,251,982 (GRCm39) I47T probably damaging Het
Iqgap1 G A 7: 80,387,869 (GRCm39) T926M probably damaging Het
Lonp1 A T 17: 56,922,086 (GRCm39) S765T probably benign Het
Lpp C T 16: 24,580,365 (GRCm39) S27F probably damaging Het
Luc7l C A 17: 26,472,054 (GRCm39) T17K probably damaging Het
Mmut A G 17: 41,249,708 (GRCm39) T228A possibly damaging Het
Mroh1 G T 15: 76,330,799 (GRCm39) S1161I possibly damaging Het
Muc5b T G 7: 141,407,104 (GRCm39) C1091G unknown Het
Nppb A T 4: 148,070,463 (GRCm39) I11F probably benign Het
Nsf A T 11: 103,719,351 (GRCm39) D650E probably benign Het
Ogdh A G 11: 6,305,015 (GRCm39) K907E probably damaging Het
Or1b1 G A 2: 36,995,437 (GRCm39) S75F probably benign Het
Or1j15 A G 2: 36,458,820 (GRCm39) D70G probably damaging Het
Or7a35 A G 10: 78,853,555 (GRCm39) Y133C probably damaging Het
Pcnx1 A T 12: 81,907,156 (GRCm39) Q4L possibly damaging Het
Pgc T A 17: 48,037,856 (GRCm39) L9H probably damaging Het
Pikfyve T A 1: 65,285,556 (GRCm39) S887T probably benign Het
Plec T C 15: 76,059,815 (GRCm39) D3239G probably damaging Het
Pole4 T C 6: 82,625,015 (GRCm39) T116A probably benign Het
Potegl T C 2: 23,120,212 (GRCm39) F203L probably damaging Het
Prpf8 A G 11: 75,381,498 (GRCm39) N300D possibly damaging Het
Rara T A 11: 98,858,907 (GRCm39) Y119N probably damaging Het
Rbck1 G T 2: 152,160,294 (GRCm39) R462S possibly damaging Het
Setdb2 C T 14: 59,639,764 (GRCm39) R709Q probably damaging Het
Slfn2 C A 11: 82,960,670 (GRCm39) N216K probably benign Het
Suox A G 10: 128,507,967 (GRCm39) probably benign Het
Tars1 T A 15: 11,391,280 (GRCm39) Y283F probably damaging Het
Trpm4 A T 7: 44,967,603 (GRCm39) probably null Het
Ubtd2 A T 11: 32,449,262 (GRCm39) K36N probably benign Het
Unkl T C 17: 25,448,408 (GRCm39) L327P probably damaging Het
Vmn1r11 T A 6: 57,114,364 (GRCm39) Y9* probably null Het
Vps13b T C 15: 35,572,227 (GRCm39) V948A probably benign Het
Zbtb17 A G 4: 141,192,264 (GRCm39) H403R probably damaging Het
Other mutations in Lrit2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00327:Lrit2 APN 14 36,793,920 (GRCm39) missense probably benign 0.31
IGL01475:Lrit2 APN 14 36,791,051 (GRCm39) missense probably damaging 1.00
IGL02080:Lrit2 APN 14 36,791,031 (GRCm39) missense probably damaging 0.99
IGL02479:Lrit2 APN 14 36,794,235 (GRCm39) missense probably damaging 0.99
IGL02715:Lrit2 APN 14 36,794,505 (GRCm39) missense probably benign 0.00
R0114:Lrit2 UTSW 14 36,790,002 (GRCm39) splice site probably null
R1344:Lrit2 UTSW 14 36,790,513 (GRCm39) missense probably benign 0.32
R1529:Lrit2 UTSW 14 36,790,784 (GRCm39) missense probably benign 0.12
R1641:Lrit2 UTSW 14 36,791,105 (GRCm39) missense probably benign 0.34
R2105:Lrit2 UTSW 14 36,793,913 (GRCm39) missense probably damaging 1.00
R4365:Lrit2 UTSW 14 36,794,076 (GRCm39) missense probably damaging 1.00
R4645:Lrit2 UTSW 14 36,794,432 (GRCm39) missense probably benign
R5226:Lrit2 UTSW 14 36,794,310 (GRCm39) missense probably damaging 1.00
R5377:Lrit2 UTSW 14 36,791,140 (GRCm39) missense possibly damaging 0.59
R5387:Lrit2 UTSW 14 36,794,216 (GRCm39) missense probably damaging 1.00
R5840:Lrit2 UTSW 14 36,790,962 (GRCm39) missense possibly damaging 0.64
R5881:Lrit2 UTSW 14 36,794,192 (GRCm39) missense probably benign 0.02
R6499:Lrit2 UTSW 14 36,790,767 (GRCm39) missense probably damaging 0.98
R6863:Lrit2 UTSW 14 36,793,901 (GRCm39) missense probably damaging 0.99
R7307:Lrit2 UTSW 14 36,794,156 (GRCm39) missense probably benign 0.00
R7316:Lrit2 UTSW 14 36,790,815 (GRCm39) missense probably damaging 1.00
R7491:Lrit2 UTSW 14 36,790,867 (GRCm39) missense possibly damaging 0.83
R7525:Lrit2 UTSW 14 36,794,450 (GRCm39) missense possibly damaging 0.76
R7640:Lrit2 UTSW 14 36,794,081 (GRCm39) missense probably damaging 1.00
R8228:Lrit2 UTSW 14 36,791,148 (GRCm39) missense probably damaging 1.00
R8397:Lrit2 UTSW 14 36,791,034 (GRCm39) missense probably damaging 0.98
R8815:Lrit2 UTSW 14 36,794,487 (GRCm39) missense probably benign 0.00
R9099:Lrit2 UTSW 14 36,790,812 (GRCm39) missense possibly damaging 0.90
R9152:Lrit2 UTSW 14 36,794,187 (GRCm39) missense probably damaging 1.00
R9193:Lrit2 UTSW 14 36,794,550 (GRCm39) missense possibly damaging 0.72
R9309:Lrit2 UTSW 14 36,793,848 (GRCm39) missense probably benign 0.03
R9517:Lrit2 UTSW 14 36,794,272 (GRCm39) nonsense probably null
R9670:Lrit2 UTSW 14 36,790,115 (GRCm39) nonsense probably null
R9764:Lrit2 UTSW 14 36,790,936 (GRCm39) missense probably damaging 1.00
Posted On 2015-04-16