Incidental Mutation 'IGL02148:D430042O09Rik'
ID281867
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol D430042O09Rik
Ensembl Gene ENSMUSG00000032743
Gene NameRIKEN cDNA D430042O09 gene
Synonyms
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #IGL02148
Quality Score
Status
Chromosome7
Chromosomal Location125707888-125874793 bp(+) (GRCm38)
Type of Mutationsplice site (1224 bp from exon)
DNA Base Change (assembly) A to T at 125873476 bp
ZygosityHeterozygous
Amino Acid Change
Gene Model predicted gene model for transcript(s): [ENSMUST00000069660] [ENSMUST00000073935] [ENSMUST00000124223]
Predicted Effect probably null
Transcript: ENSMUST00000069660
AA Change: K1602*
SMART Domains Protein: ENSMUSP00000065744
Gene: ENSMUSG00000032743
AA Change: K1602*

DomainStartEndE-ValueType
internal_repeat_3 442 586 9.64e-5 PROSPERO
internal_repeat_2 454 607 1.91e-6 PROSPERO
low complexity region 704 718 N/A INTRINSIC
Pfam:DUF4457 909 1099 5.1e-43 PFAM
Pfam:DUF4457 1205 1524 8.4e-149 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000073935
SMART Domains Protein: ENSMUSP00000073591
Gene: ENSMUSG00000046182

DomainStartEndE-ValueType
Pfam:GSG-1 5 122 4.9e-46 PFAM
Pfam:PMP22_Claudin 8 227 8.5e-12 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000124223
AA Change: K1576*
SMART Domains Protein: ENSMUSP00000118668
Gene: ENSMUSG00000032743
AA Change: K1576*

DomainStartEndE-ValueType
internal_repeat_3 416 560 8.9e-5 PROSPERO
internal_repeat_2 428 581 1.74e-6 PROSPERO
low complexity region 678 692 N/A INTRINSIC
Pfam:DUF4457 882 1073 1.4e-39 PFAM
Pfam:DUF4457 1179 1498 2.2e-145 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000132204
SMART Domains Protein: ENSMUSP00000115955
Gene: ENSMUSG00000032743

DomainStartEndE-ValueType
Pfam:DUF4457 1 143 3.6e-51 PFAM
Pfam:DUF4457 139 219 2.4e-41 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000205462
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a novel, evolutionarily conserved, ciliary protein. In human hTERT-RPE1 cells, the protein is found at the base of cilia, decorating the ciliary axoneme, and enriched at the ciliary tip. The protein binds to microtubules in vitro and regulates their stability when it is overexpressed. A null mutation in this gene has been associated with Joubert syndrome, a recessive disorder that is characterized by a distinctive mid-hindbrain and cerebellar malformation and is also often associated with wider ciliopathy symptoms. Consistently, in a serum-starvation ciliogenesis assay, human fibroblast cells derived from patients with the mutation display a reduced number of ciliated cells with abnormally long cilia. [provided by RefSeq, Feb 2016]
PHENOTYPE: Mice homozygous for a gene trapped allele exhibit variable obstructive hydrocephaly and enlarged lateral ventricles resulting from a blockage of cerebrospinal fluid flow in the cerebral aqueduct but show no gross defects in ventricular ependymal cilium structure or motility. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 46 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700024P04Rik A T 13: 98,984,183 F112I probably damaging Het
Akna C T 4: 63,382,479 probably benign Het
AU040320 T C 4: 126,839,676 V663A possibly damaging Het
Cdh13 A G 8: 119,198,958 D355G probably damaging Het
Cdyl2 A G 8: 116,589,244 probably benign Het
Csnk1g3 C T 18: 53,953,288 R422C probably benign Het
Dclk1 T A 3: 55,500,099 V233D probably damaging Het
Ddx59 T C 1: 136,433,827 S477P probably damaging Het
Epb41l1 A T 2: 156,511,828 probably benign Het
Epha2 T C 4: 141,318,524 L453P probably damaging Het
Esco2 T C 14: 65,826,595 H380R probably benign Het
Fbxo38 T C 18: 62,536,227 M51V probably benign Het
Fgb T C 3: 83,043,287 M387V probably damaging Het
Fryl A G 5: 73,075,959 L1522S probably benign Het
Gdf9 T A 11: 53,436,742 M175K probably benign Het
Gm13023 T A 4: 143,792,734 Y22N probably benign Het
Gm20547 C T 17: 34,860,548 D243N probably benign Het
Gramd1b T A 9: 40,315,764 D299V probably damaging Het
Gsg1l G T 7: 125,923,499 Q186K possibly damaging Het
Kcnh5 A G 12: 74,897,652 L941P possibly damaging Het
Lrrc8d A G 5: 105,812,387 D221G possibly damaging Het
Med19 T C 2: 84,685,259 F96L probably damaging Het
Mei1 C A 15: 82,092,711 S589* probably null Het
Myh15 G T 16: 49,116,315 D708Y probably damaging Het
Naca C T 10: 128,043,884 probably benign Het
Olfr1173 A T 2: 88,274,222 Y276N possibly damaging Het
Otog G A 7: 46,300,587 C306Y probably damaging Het
Phldb1 T C 9: 44,696,072 K1279E probably damaging Het
Pkd1 C T 17: 24,579,836 T369I probably damaging Het
Plekha8 A G 6: 54,615,286 S32G probably damaging Het
Sema4g A G 19: 44,996,469 T113A probably damaging Het
Setdb2 C T 14: 59,402,315 R709Q probably damaging Het
Sh3rf3 T C 10: 59,086,740 M546T probably benign Het
Slc27a5 A G 7: 12,994,951 V328A probably damaging Het
Spef1 T C 2: 131,172,768 N78S probably benign Het
Tln1 T C 4: 43,555,388 T179A probably damaging Het
Tmc5 T C 7: 118,645,324 I475T probably damaging Het
Top2b A G 14: 16,400,488 Y621C probably damaging Het
Ttf1 T C 2: 29,079,426 F727L probably benign Het
Tufm T C 7: 126,489,160 L75P probably damaging Het
Ugt1a2 T A 1: 88,201,074 D146E probably damaging Het
Usp15 G A 10: 123,127,837 T533I probably damaging Het
Vmn1r113 A G 7: 20,787,822 T180A probably benign Het
Vmn1r205 G T 13: 22,592,225 P236T probably damaging Het
Vmn2r112 T G 17: 22,619,032 C825G probably damaging Het
Zfp712 T A 13: 67,042,158 I102F probably damaging Het
Other mutations in D430042O09Rik
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00697:D430042O09Rik APN 7 125795450 missense possibly damaging 0.75
IGL00950:D430042O09Rik APN 7 125843221 missense probably benign
IGL01089:D430042O09Rik APN 7 125795313 missense probably damaging 1.00
IGL01099:D430042O09Rik APN 7 125865320 missense probably damaging 1.00
IGL01449:D430042O09Rik APN 7 125870685 missense probably damaging 1.00
IGL01545:D430042O09Rik APN 7 125752971 critical splice acceptor site probably null
IGL01937:D430042O09Rik APN 7 125854605 missense probably benign 0.13
IGL01949:D430042O09Rik APN 7 125761842 nonsense probably null
IGL02096:D430042O09Rik APN 7 125814821 missense probably benign 0.09
IGL02274:D430042O09Rik APN 7 125770570 critical splice acceptor site probably null
IGL02323:D430042O09Rik APN 7 125842829 missense probably benign 0.04
IGL02574:D430042O09Rik APN 7 125829753 missense possibly damaging 0.48
IGL02639:D430042O09Rik APN 7 125872792 missense probably damaging 1.00
IGL02833:D430042O09Rik APN 7 125850412 nonsense probably null
IGL03003:D430042O09Rik APN 7 125851960 missense probably damaging 1.00
IGL03011:D430042O09Rik APN 7 125852002 missense probably benign 0.01
IGL03332:D430042O09Rik APN 7 125820105 nonsense probably null
IGL03368:D430042O09Rik APN 7 125868858 intron probably benign
E0370:D430042O09Rik UTSW 7 125850302 missense probably benign 0.06
PIT4498001:D430042O09Rik UTSW 7 125813596 missense probably benign
R0033:D430042O09Rik UTSW 7 125761827 missense possibly damaging 0.77
R0033:D430042O09Rik UTSW 7 125761827 missense possibly damaging 0.77
R0234:D430042O09Rik UTSW 7 125795385 missense probably benign 0.00
R0234:D430042O09Rik UTSW 7 125795385 missense probably benign 0.00
R0472:D430042O09Rik UTSW 7 125872967 missense probably damaging 0.98
R0479:D430042O09Rik UTSW 7 125843346 missense probably benign 0.20
R1195:D430042O09Rik UTSW 7 125866482 missense probably damaging 1.00
R1195:D430042O09Rik UTSW 7 125866482 missense probably damaging 1.00
R1195:D430042O09Rik UTSW 7 125866482 missense probably damaging 1.00
R1223:D430042O09Rik UTSW 7 125760423 missense possibly damaging 0.75
R1299:D430042O09Rik UTSW 7 125852023 missense probably benign
R1331:D430042O09Rik UTSW 7 125866455 missense probably benign 0.00
R1484:D430042O09Rik UTSW 7 125816571 splice site probably benign
R1507:D430042O09Rik UTSW 7 125866352 missense probably damaging 1.00
R1562:D430042O09Rik UTSW 7 125842848 missense probably damaging 1.00
R1992:D430042O09Rik UTSW 7 125820089 missense probably benign 0.00
R2008:D430042O09Rik UTSW 7 125860566 missense probably damaging 1.00
R2010:D430042O09Rik UTSW 7 125872956 missense possibly damaging 0.93
R2147:D430042O09Rik UTSW 7 125865320 missense probably damaging 1.00
R2508:D430042O09Rik UTSW 7 125795343 missense probably benign
R3015:D430042O09Rik UTSW 7 125866340 missense probably damaging 1.00
R3794:D430042O09Rik UTSW 7 125820089 missense probably benign 0.00
R3795:D430042O09Rik UTSW 7 125820089 missense probably benign 0.00
R4043:D430042O09Rik UTSW 7 125868741 missense probably benign 0.30
R4044:D430042O09Rik UTSW 7 125868741 missense probably benign 0.30
R4692:D430042O09Rik UTSW 7 125867669 critical splice donor site probably null
R4772:D430042O09Rik UTSW 7 125865351 missense probably damaging 0.96
R5155:D430042O09Rik UTSW 7 125872184 missense probably damaging 1.00
R5467:D430042O09Rik UTSW 7 125843355 missense possibly damaging 0.65
R5551:D430042O09Rik UTSW 7 125820077 missense probably damaging 1.00
R5560:D430042O09Rik UTSW 7 125854561 missense probably benign 0.00
R5662:D430042O09Rik UTSW 7 125842703 missense probably benign 0.00
R5667:D430042O09Rik UTSW 7 125843455 critical splice donor site probably null
R5838:D430042O09Rik UTSW 7 125867655 missense possibly damaging 0.88
R5958:D430042O09Rik UTSW 7 125813635 missense probably benign 0.01
R5983:D430042O09Rik UTSW 7 125850373 missense probably damaging 1.00
R6084:D430042O09Rik UTSW 7 125814865 missense probably benign
R6241:D430042O09Rik UTSW 7 125872834 missense probably benign 0.00
R6298:D430042O09Rik UTSW 7 125870697 missense probably benign 0.11
R6345:D430042O09Rik UTSW 7 125752987 missense probably damaging 0.97
R6554:D430042O09Rik UTSW 7 125850742 missense probably damaging 1.00
R6715:D430042O09Rik UTSW 7 125761829 nonsense probably null
R6745:D430042O09Rik UTSW 7 125770650 missense probably benign 0.00
R7178:D430042O09Rik UTSW 7 125866327 missense probably benign 0.00
R7210:D430042O09Rik UTSW 7 125872239 missense probably damaging 1.00
R7404:D430042O09Rik UTSW 7 125865262 missense probably damaging 1.00
R7561:D430042O09Rik UTSW 7 125842722 missense probably benign
R7571:D430042O09Rik UTSW 7 125708021 unclassified probably benign
R7584:D430042O09Rik UTSW 7 125870666 missense probably damaging 0.99
R7629:D430042O09Rik UTSW 7 125795250 missense probably damaging 0.96
R7676:D430042O09Rik UTSW 7 125850377 missense probably benign 0.26
R7748:D430042O09Rik UTSW 7 125829801 missense probably benign 0.00
R7786:D430042O09Rik UTSW 7 125865294 missense probably benign 0.19
R8058:D430042O09Rik UTSW 7 125843016 missense probably benign 0.17
R8154:D430042O09Rik UTSW 7 125813630 missense probably damaging 0.98
R8204:D430042O09Rik UTSW 7 125850742 missense probably damaging 1.00
R8359:D430042O09Rik UTSW 7 125868851 critical splice donor site probably null
U24488:D430042O09Rik UTSW 7 125770681 missense probably damaging 0.96
Posted On2015-04-16