Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02157:Nup188'

282267

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Nup188

Ensembl Gene

ENSMUSG00000052533

Gene Name

nucleoporin 188

Synonyms

Accession Numbers

Essential gene?

Probably essential (E-score: 0.961) question?

Stock #

IGL02157

Quality Score

Status

Chromosome

Chromosomal Location

30286397-30344266 bp(+) (GRCm38)

Type of Mutation

nonsense

DNA Base Change (assembly)

T to A at 30329373 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Stop codon at position 867 (L867*)

Ref Sequence

ENSEMBL: ENSMUSP00000065836 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000064447]

AlphaFold

Q6ZQH8

Predicted Effect

probably null
Transcript: ENSMUST00000064447
AA Change: L867*

SMART Domains

Protein: ENSMUSP00000065836
Gene: ENSMUSG00000052533
AA Change: L867*

Domain	Start	End	E-Value	Type
Pfam:Nup188	31	941	9.3e-213	PFAM
low complexity region	1020	1035	N/A	INTRINSIC
low complexity region	1307	1320	N/A	INTRINSIC
low complexity region	1330	1360	N/A	INTRINSIC
low complexity region	1696	1709	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133603

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The nuclear pore complex (NPC) is found on the nuclear envelope and forms a gateway that regulates the flow of proteins and RNAs between the cytoplasm and nucleoplasm. The NPC is comprised of approximately 30 distinct proteins collectively known as nucleoporins. Nucleoporins are pore-complex-specific glycoproteins which often have cytoplasmically oriented O-linked N-acetylglucosamine residues and numerous repeats of the pentapeptide sequence XFXFG. However, the nucleoporin protein encoded by this gene does not contain the typical FG repeat sequences found in most vertebrate nucleoporins. This nucleoporin is thought to form part of the scaffold for the central channel of the nuclear pore. [provided by RefSeq, Jan 2013]

Allele List at MGI

Other mutations in this stock

Total: 33 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb1b	T	C	5: 8,805,487 (GRCm38)		probably benign	Het
Amotl1	A	T	9: 14,571,715 (GRCm38)		probably benign	Het
Amph	A	T	13: 19,104,231 (GRCm38)	T297S	possibly damaging	Het
Arhgap31	A	G	16: 38,623,901 (GRCm38)	V198A	probably damaging	Het
Bop1	T	C	15: 76,455,572 (GRCm38)	D216G	possibly damaging	Het
Cdh13	T	C	8: 118,505,671 (GRCm38)	I38T	possibly damaging	Het
Clmn	T	C	12: 104,781,918 (GRCm38)	T457A	probably benign	Het
Clstn2	A	C	9: 97,541,875 (GRCm38)	M279R	probably benign	Het
Csgalnact1	C	A	8: 68,401,492 (GRCm38)	G219V	probably damaging	Het
Fam83h	A	T	15: 76,005,055 (GRCm38)	V208E	probably damaging	Het
Fer	A	G	17: 64,138,899 (GRCm38)	N785S	probably benign	Het
Fnip1	T	C	11: 54,487,763 (GRCm38)	L225P	probably damaging	Het
Gbp11	C	T	5: 105,327,508 (GRCm38)	V325M	possibly damaging	Het
Glis1	A	G	4: 107,627,561 (GRCm38)	T418A	probably benign	Het
Gm13088	A	T	4: 143,654,377 (GRCm38)	C359S	probably damaging	Het
Hook2	C	T	8: 85,001,150 (GRCm38)		probably benign	Het
Hoxa6	C	A	6: 52,208,191 (GRCm38)	C145F	possibly damaging	Het
Lyst	G	A	13: 13,660,956 (GRCm38)	C1741Y	probably benign	Het
Mbd5	T	C	2: 49,278,975 (GRCm38)	V1156A	probably benign	Het
Mettl7b	T	G	10: 128,960,617 (GRCm38)	T108P	possibly damaging	Het
Mon2	G	A	10: 123,013,472 (GRCm38)	P1308S	probably damaging	Het
Mta2	T	A	19: 8,947,249 (GRCm38)		probably benign	Het
Oca2	G	A	7: 56,324,797 (GRCm38)		probably null	Het
Olfr535	T	A	7: 140,492,934 (GRCm38)	C99S	probably damaging	Het
Olfr794	A	G	10: 129,571,150 (GRCm38)	E165G	probably damaging	Het
Olfr857	T	A	9: 19,713,289 (GRCm38)	V154E	probably benign	Het
Plekhh2	A	G	17: 84,566,942 (GRCm38)		probably benign	Het
Rhbdd3	T	C	11: 5,105,424 (GRCm38)		probably benign	Het
Timeless	T	A	10: 128,242,386 (GRCm38)	V255E	probably benign	Het
Trh	A	T	6: 92,242,967 (GRCm38)	S123T	probably benign	Het
Ugdh	C	T	5: 65,422,692 (GRCm38)	A252T	probably damaging	Het
Zfp619	A	G	7: 39,534,864 (GRCm38)	Y106C	probably damaging	Het
Zic5	G	A	14: 122,459,512 (GRCm38)	P564S	unknown	Het

Other mutations in Nup188

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00908:Nup188	APN	2	30,333,400 (GRCm38)	missense	probably damaging	0.98
IGL01599:Nup188	APN	2	30,327,525 (GRCm38)	missense	possibly damaging	0.92
IGL01938:Nup188	APN	2	30,329,359 (GRCm38)	missense	probably benign
IGL01973:Nup188	APN	2	30,339,850 (GRCm38)	missense	possibly damaging	0.95
IGL02221:Nup188	APN	2	30,330,641 (GRCm38)	missense	possibly damaging	0.75
IGL02277:Nup188	APN	2	30,326,511 (GRCm38)	missense	possibly damaging	0.95
IGL02335:Nup188	APN	2	30,323,636 (GRCm38)	critical splice donor site	probably null
IGL02986:Nup188	APN	2	30,307,633 (GRCm38)	splice site	probably null
IGL03029:Nup188	APN	2	30,322,580 (GRCm38)	splice site	probably benign
IGL03194:Nup188	APN	2	30,304,334 (GRCm38)	missense	possibly damaging	0.95
IGL03370:Nup188	APN	2	30,340,641 (GRCm38)	missense	possibly damaging	0.52
core	UTSW	2	30,339,894 (GRCm38)	missense	probably damaging	1.00
kern	UTSW	2	30,337,033 (GRCm38)	missense	possibly damaging	0.94
P0027:Nup188	UTSW	2	30,322,681 (GRCm38)	missense	probably damaging	0.99
R0006:Nup188	UTSW	2	30,322,023 (GRCm38)	missense	probably benign	0.27
R0360:Nup188	UTSW	2	30,326,479 (GRCm38)	missense	probably null	0.93
R0373:Nup188	UTSW	2	30,330,988 (GRCm38)	missense	probably damaging	1.00
R0645:Nup188	UTSW	2	30,343,466 (GRCm38)	splice site	probably null
R1411:Nup188	UTSW	2	30,343,795 (GRCm38)	missense	probably benign	0.01
R1670:Nup188	UTSW	2	30,340,655 (GRCm38)	missense	probably benign	0.19
R2034:Nup188	UTSW	2	30,310,085 (GRCm38)	unclassified	probably benign
R2113:Nup188	UTSW	2	30,304,101 (GRCm38)	nonsense	probably null
R2142:Nup188	UTSW	2	30,336,706 (GRCm38)	missense	possibly damaging	0.49
R2221:Nup188	UTSW	2	30,336,924 (GRCm38)	splice site	probably benign
R2567:Nup188	UTSW	2	30,341,782 (GRCm38)	missense	possibly damaging	0.53
R2964:Nup188	UTSW	2	30,325,346 (GRCm38)	missense	probably damaging	0.98
R4006:Nup188	UTSW	2	30,309,878 (GRCm38)	missense	probably damaging	0.99
R4007:Nup188	UTSW	2	30,309,878 (GRCm38)	missense	probably damaging	0.99
R4079:Nup188	UTSW	2	30,309,878 (GRCm38)	missense	probably damaging	0.99
R4480:Nup188	UTSW	2	30,322,129 (GRCm38)	intron	probably benign
R4628:Nup188	UTSW	2	30,329,346 (GRCm38)	missense	probably damaging	1.00
R4687:Nup188	UTSW	2	30,330,633 (GRCm38)	missense	probably benign	0.01
R4814:Nup188	UTSW	2	30,326,511 (GRCm38)	missense	possibly damaging	0.95
R4834:Nup188	UTSW	2	30,339,584 (GRCm38)	missense	probably damaging	1.00
R5038:Nup188	UTSW	2	30,309,220 (GRCm38)	missense	probably damaging	0.98
R5056:Nup188	UTSW	2	30,304,131 (GRCm38)	missense	probably damaging	0.98
R5124:Nup188	UTSW	2	30,330,935 (GRCm38)	missense	probably damaging	1.00
R5256:Nup188	UTSW	2	30,330,749 (GRCm38)	missense	probably damaging	1.00
R5284:Nup188	UTSW	2	30,330,635 (GRCm38)	missense	probably damaging	1.00
R5548:Nup188	UTSW	2	30,326,493 (GRCm38)	missense	probably damaging	0.99
R5560:Nup188	UTSW	2	30,309,885 (GRCm38)	missense	probably damaging	0.99
R5668:Nup188	UTSW	2	30,336,324 (GRCm38)	missense	probably damaging	1.00
R5769:Nup188	UTSW	2	30,330,735 (GRCm38)	missense	probably benign	0.34
R5773:Nup188	UTSW	2	30,322,196 (GRCm38)	missense	possibly damaging	0.92
R5774:Nup188	UTSW	2	30,301,048 (GRCm38)	missense	probably damaging	1.00
R5827:Nup188	UTSW	2	30,339,847 (GRCm38)	missense	probably damaging	1.00
R5919:Nup188	UTSW	2	30,339,894 (GRCm38)	missense	probably damaging	1.00
R5923:Nup188	UTSW	2	30,304,090 (GRCm38)	missense	probably benign
R6185:Nup188	UTSW	2	30,341,710 (GRCm38)	missense	probably damaging	0.97
R6457:Nup188	UTSW	2	30,322,187 (GRCm38)	missense	probably damaging	0.98
R6529:Nup188	UTSW	2	30,326,454 (GRCm38)	missense	possibly damaging	0.95
R7002:Nup188	UTSW	2	30,323,568 (GRCm38)	missense	probably damaging	0.99
R7195:Nup188	UTSW	2	30,341,830 (GRCm38)	critical splice donor site	probably null
R7214:Nup188	UTSW	2	30,307,554 (GRCm38)	missense	possibly damaging	0.71
R7345:Nup188	UTSW	2	30,340,601 (GRCm38)	missense	probably benign	0.09
R7853:Nup188	UTSW	2	30,323,563 (GRCm38)	missense	possibly damaging	0.95
R7998:Nup188	UTSW	2	30,330,971 (GRCm38)	missense	probably damaging	1.00
R8012:Nup188	UTSW	2	30,337,265 (GRCm38)	missense	possibly damaging	0.95
R8080:Nup188	UTSW	2	30,337,033 (GRCm38)	missense	possibly damaging	0.94
R8804:Nup188	UTSW	2	30,330,879 (GRCm38)	missense	probably benign
R8850:Nup188	UTSW	2	30,327,564 (GRCm38)	missense	probably damaging	0.99
R9110:Nup188	UTSW	2	30,332,449 (GRCm38)	missense	possibly damaging	0.94
R9157:Nup188	UTSW	2	30,298,444 (GRCm38)	missense	probably benign	0.02
R9209:Nup188	UTSW	2	30,342,385 (GRCm38)	missense	probably benign	0.02
R9287:Nup188	UTSW	2	30,336,714 (GRCm38)	missense	probably damaging	0.99
R9325:Nup188	UTSW	2	30,322,259 (GRCm38)	missense	probably damaging	0.99
R9390:Nup188	UTSW	2	30,330,765 (GRCm38)	critical splice donor site	probably null
R9607:Nup188	UTSW	2	30,307,712 (GRCm38)	missense	probably benign	0.01
R9746:Nup188	UTSW	2	30,304,288 (GRCm38)	missense	probably damaging	0.99
R9768:Nup188	UTSW	2	30,337,033 (GRCm38)	missense	probably damaging	0.99
T0722:Nup188	UTSW	2	30,322,681 (GRCm38)	missense	probably damaging	0.99

Posted On

2015-04-16