Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02063:Gli3'

283299

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Gli3

Ensembl Gene

ENSMUSG00000021318

Gene Name

GLI-Kruppel family member GLI3

Synonyms

brachyphalangy, Bph

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

IGL02063

Quality Score

Status

Chromosome

Chromosomal Location

15463235-15730026 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 15726372 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 1448 (D1448G)

Ref Sequence

ENSEMBL: ENSMUSP00000106137 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000110510]

AlphaFold

Q61602

Predicted Effect

possibly damaging
Transcript: ENSMUST00000110510
AA Change: D1448G

PolyPhen 2 Score 0.940 (Sensitivity: 0.80; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000106137
Gene: ENSMUSG00000021318
AA Change: D1448G

Domain	Start	End	E-Value	Type
low complexity region	120	136	N/A	INTRINSIC
low complexity region	204	220	N/A	INTRINSIC
low complexity region	324	341	N/A	INTRINSIC
low complexity region	403	421	N/A	INTRINSIC
ZnF_C2H2	480	505	1.53e-1	SMART
ZnF_C2H2	513	540	1.23e0	SMART
ZnF_C2H2	546	570	3.16e-3	SMART
ZnF_C2H2	576	601	4.17e-3	SMART
ZnF_C2H2	607	632	1.4e-4	SMART
low complexity region	703	726	N/A	INTRINSIC
low complexity region	756	763	N/A	INTRINSIC
low complexity region	849	880	N/A	INTRINSIC
low complexity region	934	944	N/A	INTRINSIC
low complexity region	1024	1038	N/A	INTRINSIC
low complexity region	1081	1095	N/A	INTRINSIC
low complexity region	1166	1175	N/A	INTRINSIC

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein which belongs to the C2H2-type zinc finger proteins subclass of the Gli family. They are characterized as DNA-binding transcription factors and are mediators of Sonic hedgehog (Shh) signaling. The protein encoded by this gene localizes in the cytoplasm and activates patched Drosophila homolog (PTCH) gene expression. It is also thought to play a role during embryogenesis. Mutations in this gene have been associated with several diseases, including Greig cephalopolysyndactyly syndrome, Pallister-Hall syndrome, preaxial polydactyly type IV, and postaxial polydactyly types A1 and B. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous mutants die perinatally with gross polydactyly, multiple craniofacial defects, and frequently, exencephaly. Heterozygotes exhibit enlarged interfrontal bone and extra preaxial digits. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Atg2b	A	G	12: 105,648,322 (GRCm38)	Y1117H	possibly damaging	Het
B020004C17Rik	A	G	14: 57,016,023 (GRCm38)	R24G	probably damaging	Het
BC005624	A	G	2: 30,978,934 (GRCm38)	M76T	probably benign	Het
Blm	G	T	7: 80,509,419 (GRCm38)	S323*	probably null	Het
Card19	C	A	13: 49,203,131 (GRCm38)	G181*	probably null	Het
Cilp2	T	C	8: 69,882,865 (GRCm38)	I494M	probably damaging	Het
Col5a2	A	G	1: 45,403,419 (GRCm38)		probably null	Het
Col6a4	T	C	9: 106,057,418 (GRCm38)	D1431G	probably benign	Het
Cped1	G	A	6: 22,138,702 (GRCm38)	C560Y	probably damaging	Het
Cyfip1	T	C	7: 55,926,348 (GRCm38)	S1091P	probably damaging	Het
Ddx24	A	G	12: 103,418,202 (GRCm38)	I466T	probably damaging	Het
Dlg2	T	A	7: 91,810,476 (GRCm38)		probably benign	Het
Esf1	C	A	2: 140,164,457 (GRCm38)	D257Y	possibly damaging	Het
Fgfr2	A	G	7: 130,167,755 (GRCm38)	F634S	probably damaging	Het
Flywch2	A	G	17: 23,777,107 (GRCm38)		probably benign	Het
Gbp10	A	T	5: 105,236,040 (GRCm38)	I32N	possibly damaging	Het
Gm10335	T	C	10: 14,523,403 (GRCm38)		probably benign	Het
Gm5724	T	C	6: 141,738,889 (GRCm38)	D280G	probably benign	Het
Golga5	A	T	12: 102,472,159 (GRCm38)	E44D	probably benign	Het
H2-M10.1	C	T	17: 36,324,009 (GRCm38)		probably benign	Het
Ino80b	A	T	6: 83,124,162 (GRCm38)	D141E	probably damaging	Het
Itpr3	A	G	17: 27,120,023 (GRCm38)	I2593V	probably benign	Het
Krt73	C	T	15: 101,795,769 (GRCm38)		probably benign	Het
Loxl4	G	T	19: 42,608,339 (GRCm38)	L78I	probably benign	Het
Mbd5	A	T	2: 49,274,767 (GRCm38)	N360I	probably damaging	Het
Nfat5	A	T	8: 107,361,818 (GRCm38)	M495L	probably benign	Het
Nrxn3	A	T	12: 88,795,795 (GRCm38)	E204V	possibly damaging	Het
Olfr1053	G	T	2: 86,314,793 (GRCm38)	F164L	possibly damaging	Het
Paqr4	A	T	17: 23,739,912 (GRCm38)	C38*	probably null	Het
Pcdhb13	T	A	18: 37,444,229 (GRCm38)	N553K	probably damaging	Het
Pcdhb9	T	A	18: 37,401,757 (GRCm38)	M268K	probably benign	Het
Pdap1	A	T	5: 145,135,059 (GRCm38)		probably benign	Het
Phf2	A	T	13: 48,821,642 (GRCm38)	Y281N	unknown	Het
Phka2	T	A	X: 160,564,213 (GRCm38)	I664N	possibly damaging	Het
Plekha7	A	T	7: 116,140,701 (GRCm38)	D762E	possibly damaging	Het
Plekhg4	T	A	8: 105,379,252 (GRCm38)		probably benign	Het
Ppfia2	A	T	10: 106,904,845 (GRCm38)	Q1006L	probably null	Het
Pramef8	C	A	4: 143,417,851 (GRCm38)	Q256K	probably benign	Het
Prmt5	G	A	14: 54,511,020 (GRCm38)	Q197*	probably null	Het
Prodh	A	T	16: 18,079,185 (GRCm38)		probably null	Het
Rnft2	A	G	5: 118,242,522 (GRCm38)		probably benign	Het
Rp1l1	G	T	14: 64,029,536 (GRCm38)	S857I	probably damaging	Het
Samd9l	A	G	6: 3,372,992 (GRCm38)	F1423S	probably damaging	Het
Scn3a	A	G	2: 65,461,510 (GRCm38)	Y1631H	probably damaging	Het
Slc22a5	A	T	11: 53,875,073 (GRCm38)	I229K	probably damaging	Het
Snd1	T	A	6: 28,526,221 (GRCm38)		probably benign	Het
Srrm1	G	T	4: 135,347,207 (GRCm38)		probably null	Het
Syne2	T	C	12: 76,052,100 (GRCm38)	V5252A	probably damaging	Het
Tek	A	G	4: 94,739,645 (GRCm38)	D2G	probably benign	Het
Uba1	T	C	X: 20,679,725 (GRCm38)	S803P	probably damaging	Het
Uggt2	A	G	14: 119,089,193 (GRCm38)	I202T	possibly damaging	Het
Umodl1	A	T	17: 30,987,914 (GRCm38)	I760F	probably benign	Het
Vgll1	A	G	X: 57,099,209 (GRCm38)		probably benign	Het
Zadh2	T	A	18: 84,095,265 (GRCm38)	Y355*	probably null	Het
Zfp236	A	G	18: 82,658,151 (GRCm38)	V347A	probably benign	Het
Zswim9	T	C	7: 13,260,681 (GRCm38)	E516G	probably damaging	Het

Other mutations in Gli3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00417:Gli3	APN	13	15,644,299 (GRCm38)	missense	probably damaging	1.00
IGL00471:Gli3	APN	13	15,723,769 (GRCm38)	critical splice donor site	probably null
IGL00484:Gli3	APN	13	15,644,392 (GRCm38)	missense	possibly damaging	0.84
IGL00588:Gli3	APN	13	15,644,392 (GRCm38)	missense	possibly damaging	0.84
IGL01161:Gli3	APN	13	15,548,398 (GRCm38)	critical splice acceptor site	probably null
IGL01633:Gli3	APN	13	15,648,634 (GRCm38)	missense	probably damaging	1.00
IGL01799:Gli3	APN	13	15,726,161 (GRCm38)	missense	probably benign	0.00
IGL01861:Gli3	APN	13	15,725,325 (GRCm38)	missense	probably damaging	1.00
IGL02112:Gli3	APN	13	15,662,514 (GRCm38)	missense	probably damaging	1.00
IGL02255:Gli3	APN	13	15,648,719 (GRCm38)	missense	probably damaging	1.00
IGL02270:Gli3	APN	13	15,726,786 (GRCm38)	utr 3 prime	probably benign
IGL02336:Gli3	APN	13	15,720,289 (GRCm38)	missense	probably damaging	1.00
IGL02346:Gli3	APN	13	15,723,693 (GRCm38)	missense	probably damaging	1.00
IGL02744:Gli3	APN	13	15,613,886 (GRCm38)	critical splice donor site	probably null
IGL02877:Gli3	APN	13	15,724,742 (GRCm38)	missense	probably damaging	1.00
IGL02975:Gli3	APN	13	15,724,568 (GRCm38)	missense	probably damaging	1.00
IGL03018:Gli3	APN	13	15,660,132 (GRCm38)	missense	probably damaging	1.00
IGL03378:Gli3	APN	13	15,644,420 (GRCm38)	missense	probably damaging	1.00
IGL03406:Gli3	APN	13	15,648,581 (GRCm38)	missense	probably damaging	1.00
Capone	UTSW	13	15,715,034 (GRCm38)	missense	probably damaging	1.00
Carpals	UTSW	13	15,713,650 (GRCm38)	critical splice donor site	probably null
Ness	UTSW	13	15,723,555 (GRCm38)	missense	probably damaging	1.00
FR4737:Gli3	UTSW	13	15,644,357 (GRCm38)	missense	probably damaging	1.00
R0110:Gli3	UTSW	13	15,724,785 (GRCm38)	missense	probably damaging	1.00
R0329:Gli3	UTSW	13	15,723,558 (GRCm38)	missense	probably damaging	0.98
R0330:Gli3	UTSW	13	15,723,558 (GRCm38)	missense	probably damaging	0.98
R0360:Gli3	UTSW	13	15,724,764 (GRCm38)	missense	probably benign	0.32
R0364:Gli3	UTSW	13	15,724,764 (GRCm38)	missense	probably benign	0.32
R0469:Gli3	UTSW	13	15,724,785 (GRCm38)	missense	probably damaging	1.00
R0616:Gli3	UTSW	13	15,662,406 (GRCm38)	missense	possibly damaging	0.75
R0639:Gli3	UTSW	13	15,724,715 (GRCm38)	missense	probably damaging	1.00
R1072:Gli3	UTSW	13	15,713,605 (GRCm38)	missense	probably damaging	1.00
R1257:Gli3	UTSW	13	15,725,996 (GRCm38)	nonsense	probably null
R1270:Gli3	UTSW	13	15,723,744 (GRCm38)	missense	probably benign	0.02
R1424:Gli3	UTSW	13	15,726,314 (GRCm38)	missense	probably benign	0.00
R1481:Gli3	UTSW	13	15,613,850 (GRCm38)	missense	probably damaging	0.99
R1596:Gli3	UTSW	13	15,725,471 (GRCm38)	missense	possibly damaging	0.74
R1628:Gli3	UTSW	13	15,726,312 (GRCm38)	missense	probably benign	0.00
R1721:Gli3	UTSW	13	15,726,297 (GRCm38)	missense	probably benign	0.27
R1797:Gli3	UTSW	13	15,713,512 (GRCm38)	missense	probably damaging	0.99
R1813:Gli3	UTSW	13	15,648,691 (GRCm38)	missense	probably damaging	1.00
R1819:Gli3	UTSW	13	15,725,792 (GRCm38)	nonsense	probably null
R1988:Gli3	UTSW	13	15,726,380 (GRCm38)	missense	probably benign
R2132:Gli3	UTSW	13	15,725,549 (GRCm38)	missense	possibly damaging	0.74
R2352:Gli3	UTSW	13	15,662,392 (GRCm38)	missense	probably benign	0.02
R3085:Gli3	UTSW	13	15,660,941 (GRCm38)	missense	probably damaging	1.00
R3177:Gli3	UTSW	13	15,725,982 (GRCm38)	missense	probably benign	0.28
R3277:Gli3	UTSW	13	15,725,982 (GRCm38)	missense	probably benign	0.28
R4162:Gli3	UTSW	13	15,725,115 (GRCm38)	missense	possibly damaging	0.93
R4497:Gli3	UTSW	13	15,723,571 (GRCm38)	missense	possibly damaging	0.74
R4526:Gli3	UTSW	13	15,713,631 (GRCm38)	missense	probably damaging	1.00
R4979:Gli3	UTSW	13	15,724,464 (GRCm38)	missense	possibly damaging	0.87
R5327:Gli3	UTSW	13	15,548,507 (GRCm38)	missense	probably damaging	0.99
R5395:Gli3	UTSW	13	15,714,950 (GRCm38)	missense	probably damaging	1.00
R5494:Gli3	UTSW	13	15,725,982 (GRCm38)	missense	probably benign	0.28
R5609:Gli3	UTSW	13	15,548,453 (GRCm38)	missense	possibly damaging	0.82
R5718:Gli3	UTSW	13	15,478,165 (GRCm38)	critical splice donor site	probably null
R5810:Gli3	UTSW	13	15,644,309 (GRCm38)	missense	probably damaging	0.99
R5896:Gli3	UTSW	13	15,726,180 (GRCm38)	missense	probably benign	0.00
R5930:Gli3	UTSW	13	15,548,625 (GRCm38)	missense	probably damaging	1.00
R5964:Gli3	UTSW	13	15,726,162 (GRCm38)	nonsense	probably null
R5985:Gli3	UTSW	13	15,723,555 (GRCm38)	missense	probably damaging	1.00
R6224:Gli3	UTSW	13	15,725,145 (GRCm38)	missense	probably benign
R6278:Gli3	UTSW	13	15,725,113 (GRCm38)	missense	possibly damaging	0.69
R6330:Gli3	UTSW	13	15,724,732 (GRCm38)	missense	probably damaging	1.00
R6383:Gli3	UTSW	13	15,723,555 (GRCm38)	missense	probably damaging	1.00
R6523:Gli3	UTSW	13	15,713,650 (GRCm38)	critical splice donor site	probably null
R7072:Gli3	UTSW	13	15,725,695 (GRCm38)	missense	possibly damaging	0.51
R7085:Gli3	UTSW	13	15,715,062 (GRCm38)	missense	probably damaging	1.00
R7228:Gli3	UTSW	13	15,724,502 (GRCm38)	missense	probably benign	0.00
R7327:Gli3	UTSW	13	15,725,559 (GRCm38)	missense	probably benign	0.02
R7451:Gli3	UTSW	13	15,726,291 (GRCm38)	missense	possibly damaging	0.50
R7974:Gli3	UTSW	13	15,726,256 (GRCm38)	missense	probably benign	0.00
R8167:Gli3	UTSW	13	15,725,643 (GRCm38)	missense	probably benign	0.00
R8170:Gli3	UTSW	13	15,720,208 (GRCm38)	missense	probably benign
R8199:Gli3	UTSW	13	15,725,991 (GRCm38)	missense	probably benign	0.08
R8247:Gli3	UTSW	13	15,726,775 (GRCm38)	missense	possibly damaging	0.82
R8332:Gli3	UTSW	13	15,713,548 (GRCm38)	missense	possibly damaging	0.58
R8347:Gli3	UTSW	13	15,723,525 (GRCm38)	missense	probably damaging	1.00
R8559:Gli3	UTSW	13	15,660,132 (GRCm38)	missense	probably damaging	1.00
R8676:Gli3	UTSW	13	15,715,034 (GRCm38)	missense	probably damaging	1.00
R8905:Gli3	UTSW	13	15,726,531 (GRCm38)	missense	probably benign	0.01
R9099:Gli3	UTSW	13	15,726,735 (GRCm38)	missense	probably damaging	1.00
R9260:Gli3	UTSW	13	15,725,090 (GRCm38)	missense	probably damaging	0.99
R9317:Gli3	UTSW	13	15,715,073 (GRCm38)	missense	probably damaging	1.00
R9475:Gli3	UTSW	13	15,725,711 (GRCm38)	missense	possibly damaging	0.87
R9546:Gli3	UTSW	13	15,613,858 (GRCm38)	missense	probably benign	0.00
R9571:Gli3	UTSW	13	15,726,273 (GRCm38)	missense	probably benign	0.00
R9621:Gli3	UTSW	13	15,726,668 (GRCm38)	missense	probably benign	0.01
R9704:Gli3	UTSW	13	15,723,473 (GRCm38)	missense	probably damaging	1.00
R9787:Gli3	UTSW	13	15,725,801 (GRCm38)	missense	probably damaging	0.96
RF010:Gli3	UTSW	13	15,726,369 (GRCm38)	missense	probably damaging	1.00

Posted On

2015-04-16