Incidental Mutation 'IGL02252:Elp1'
| ID |
286418 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Elp1
|
| Ensembl Gene |
ENSMUSG00000028431 |
| Gene Name |
elongator complex protein 1 |
| Synonyms |
Ikbkap, C78473, 3110040G09Rik, IKAP |
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
IGL02252
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
4 |
| Chromosomal Location |
56749680-56802331 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
G to T
at 56759813 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Glutamine to Lysine
at position 1151
(Q1151K)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000030140
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000030140]
|
| AlphaFold |
Q7TT37 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000030140
AA Change: Q1151K
PolyPhen 2
Score 0.095 (Sensitivity: 0.93; Specificity: 0.85)
|
| SMART Domains |
Protein: ENSMUSP00000030140
Gene: ENSMUSG00000028431
AA Change: Q1151K
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:IKI3
|
1 |
955 |
N/A |
PFAM |
|
low complexity region
|
1186 |
1205 |
N/A |
INTRINSIC |
|
low complexity region
|
1210 |
1225 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000116720
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000139445
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000150002
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000171411
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a scaffold protein and a regulator for three different kinases involved in proinflammatory signaling. The encoded protein can bind NF-kappa-B-inducing kinase and I-kappa-B kinases through separate domains and assemble them into an active kinase complex. Mutations in this gene have been associated with familial dysautonomia. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jan 2016]
PHENOTYPE: Mice homozygous for a null allele exhibit embryonic lethality with arrested neural and vascular development. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 65 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 4933409G03Rik |
A |
G |
2: 68,444,678 (GRCm39) |
|
probably benign |
Het |
| Actl7b |
A |
T |
4: 56,741,205 (GRCm39) |
I51N |
probably damaging |
Het |
| Adamts12 |
A |
G |
15: 11,311,101 (GRCm39) |
I1119M |
probably benign |
Het |
| Apol10a |
T |
A |
15: 77,372,670 (GRCm39) |
V102D |
probably benign |
Het |
| Atrx |
T |
C |
X: 104,889,429 (GRCm39) |
E1628G |
possibly damaging |
Het |
| Btnl2 |
C |
T |
17: 34,584,364 (GRCm39) |
S429F |
possibly damaging |
Het |
| C4bp |
C |
A |
1: 130,564,524 (GRCm39) |
D387Y |
probably damaging |
Het |
| Ceacam23 |
G |
T |
7: 17,644,457 (GRCm39) |
V525F |
possibly damaging |
Het |
| Crybg3 |
G |
T |
16: 59,372,887 (GRCm39) |
|
probably benign |
Het |
| Dcaf12 |
G |
T |
4: 41,294,085 (GRCm39) |
H351N |
probably benign |
Het |
| Efcab3 |
C |
A |
11: 104,644,753 (GRCm39) |
R1114S |
possibly damaging |
Het |
| Fign |
A |
G |
2: 63,810,983 (GRCm39) |
S96P |
probably benign |
Het |
| Ggt5 |
A |
G |
10: 75,438,566 (GRCm39) |
I96V |
possibly damaging |
Het |
| Gm3238 |
A |
G |
10: 77,606,691 (GRCm39) |
|
probably benign |
Het |
| Gm4792 |
G |
T |
10: 94,131,102 (GRCm39) |
P69Q |
unknown |
Het |
| Ighv1-58 |
A |
T |
12: 115,275,897 (GRCm39) |
N80K |
possibly damaging |
Het |
| Irgm1 |
C |
T |
11: 48,756,981 (GRCm39) |
G277S |
possibly damaging |
Het |
| Jsrp1 |
A |
G |
10: 80,644,707 (GRCm39) |
V233A |
probably benign |
Het |
| Kcp |
T |
A |
6: 29,504,548 (GRCm39) |
R85W |
probably damaging |
Het |
| Kif14 |
T |
C |
1: 136,406,130 (GRCm39) |
Y565H |
probably damaging |
Het |
| Klk1b4 |
G |
A |
7: 43,860,094 (GRCm39) |
W69* |
probably null |
Het |
| Knl1 |
A |
T |
2: 118,903,021 (GRCm39) |
Q1574L |
probably damaging |
Het |
| Lao1 |
A |
G |
4: 118,824,613 (GRCm39) |
N232D |
probably benign |
Het |
| Lipn |
A |
G |
19: 34,049,157 (GRCm39) |
I108V |
probably benign |
Het |
| Lrrc49 |
T |
A |
9: 60,595,142 (GRCm39) |
M1L |
probably benign |
Het |
| Matn2 |
G |
T |
15: 34,316,736 (GRCm39) |
R26L |
probably damaging |
Het |
| Mmp16 |
G |
A |
4: 18,110,523 (GRCm39) |
D440N |
probably damaging |
Het |
| Mn1 |
G |
A |
5: 111,569,107 (GRCm39) |
A1026T |
probably damaging |
Het |
| Mrgpra1 |
A |
T |
7: 46,984,912 (GRCm39) |
F256I |
probably benign |
Het |
| Msantd3 |
A |
C |
4: 48,560,869 (GRCm39) |
E148D |
probably benign |
Het |
| Mylk3 |
G |
T |
8: 86,082,105 (GRCm39) |
L361I |
probably benign |
Het |
| Nlrp12 |
A |
G |
7: 3,293,980 (GRCm39) |
S117P |
probably benign |
Het |
| Nsmaf |
T |
C |
4: 6,398,378 (GRCm39) |
E870G |
probably benign |
Het |
| Oplah |
T |
C |
15: 76,188,964 (GRCm39) |
T320A |
probably damaging |
Het |
| Or5p50 |
C |
A |
7: 107,422,353 (GRCm39) |
A108S |
probably benign |
Het |
| Or7g34 |
T |
A |
9: 19,478,267 (GRCm39) |
I138F |
probably damaging |
Het |
| Pard3 |
T |
G |
8: 128,125,237 (GRCm39) |
S729A |
probably benign |
Het |
| Pdzd9 |
T |
C |
7: 120,262,238 (GRCm39) |
I75V |
probably benign |
Het |
| Pgf |
A |
G |
12: 85,216,199 (GRCm39) |
|
probably benign |
Het |
| Phf1 |
T |
A |
17: 27,154,109 (GRCm39) |
V140D |
possibly damaging |
Het |
| Pkd1l3 |
T |
C |
8: 110,357,708 (GRCm39) |
S775P |
possibly damaging |
Het |
| Rhobtb1 |
A |
T |
10: 69,085,515 (GRCm39) |
T85S |
probably damaging |
Het |
| Sez6 |
T |
A |
11: 77,865,339 (GRCm39) |
Y659N |
probably damaging |
Het |
| Sfmbt1 |
T |
C |
14: 30,539,690 (GRCm39) |
L826P |
probably damaging |
Het |
| Sftpd |
T |
A |
14: 40,894,471 (GRCm39) |
D316V |
probably damaging |
Het |
| Shc2 |
T |
C |
10: 79,462,204 (GRCm39) |
D313G |
probably benign |
Het |
| Snrk |
T |
C |
9: 121,986,326 (GRCm39) |
Y232H |
probably damaging |
Het |
| Sntg1 |
G |
T |
1: 8,484,452 (GRCm39) |
P456Q |
probably benign |
Het |
| Sorbs1 |
A |
T |
19: 40,302,841 (GRCm39) |
N783K |
probably damaging |
Het |
| Stag3 |
A |
T |
5: 138,300,810 (GRCm39) |
I923F |
probably damaging |
Het |
| Tep1 |
T |
A |
14: 51,067,712 (GRCm39) |
H2168L |
possibly damaging |
Het |
| Tmem132c |
A |
T |
5: 127,539,991 (GRCm39) |
N339I |
possibly damaging |
Het |
| Trim34b |
A |
G |
7: 103,979,139 (GRCm39) |
T129A |
probably damaging |
Het |
| Ttc21a |
T |
C |
9: 119,785,994 (GRCm39) |
L664P |
probably damaging |
Het |
| Ubl5 |
C |
T |
9: 20,556,923 (GRCm39) |
R56* |
probably null |
Het |
| Ubox5 |
G |
A |
2: 130,441,707 (GRCm39) |
R327W |
probably damaging |
Het |
| Ubr5 |
G |
T |
15: 38,025,138 (GRCm39) |
A546E |
probably damaging |
Het |
| Umodl1 |
T |
C |
17: 31,213,789 (GRCm39) |
|
probably null |
Het |
| Unc45a |
T |
C |
7: 79,982,717 (GRCm39) |
|
probably benign |
Het |
| Vmn1r236 |
C |
T |
17: 21,507,101 (GRCm39) |
T73I |
probably benign |
Het |
| Vmn2r67 |
T |
G |
7: 84,805,008 (GRCm39) |
N35H |
probably benign |
Het |
| Vmn2r74 |
A |
G |
7: 85,606,531 (GRCm39) |
Y272H |
probably benign |
Het |
| Wdr43 |
T |
A |
17: 71,933,845 (GRCm39) |
D147E |
probably damaging |
Het |
| Zfp352 |
A |
T |
4: 90,112,367 (GRCm39) |
D169V |
probably benign |
Het |
| Zim1 |
A |
T |
7: 6,691,627 (GRCm39) |
N15K |
unknown |
Het |
|
| Other mutations in Elp1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01060:Elp1
|
APN |
4 |
56,784,537 (GRCm39) |
critical splice donor site |
probably null |
|
|
IGL01521:Elp1
|
APN |
4 |
56,771,059 (GRCm39) |
missense |
probably benign |
0.27 |
|
IGL02069:Elp1
|
APN |
4 |
56,779,731 (GRCm39) |
missense |
probably benign |
0.31 |
|
IGL02162:Elp1
|
APN |
4 |
56,796,502 (GRCm39) |
critical splice donor site |
probably null |
|
|
IGL02726:Elp1
|
APN |
4 |
56,767,878 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
IGL02822:Elp1
|
APN |
4 |
56,774,520 (GRCm39) |
critical splice donor site |
probably null |
|
|
IGL03024:Elp1
|
APN |
4 |
56,774,686 (GRCm39) |
critical splice donor site |
probably null |
|
|
IGL03126:Elp1
|
APN |
4 |
56,779,717 (GRCm39) |
missense |
probably benign |
|
|
R0211:Elp1
|
UTSW |
4 |
56,795,545 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0239:Elp1
|
UTSW |
4 |
56,784,596 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0239:Elp1
|
UTSW |
4 |
56,784,596 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0603:Elp1
|
UTSW |
4 |
56,792,105 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R1109:Elp1
|
UTSW |
4 |
56,786,723 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1314:Elp1
|
UTSW |
4 |
56,786,647 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1333:Elp1
|
UTSW |
4 |
56,770,969 (GRCm39) |
splice site |
probably benign |
|
|
R1434:Elp1
|
UTSW |
4 |
56,781,193 (GRCm39) |
missense |
probably benign |
0.02 |
|
R1547:Elp1
|
UTSW |
4 |
56,798,810 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1547:Elp1
|
UTSW |
4 |
56,792,090 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1587:Elp1
|
UTSW |
4 |
56,786,666 (GRCm39) |
nonsense |
probably null |
|
|
R1601:Elp1
|
UTSW |
4 |
56,774,756 (GRCm39) |
nonsense |
probably null |
|
|
R2076:Elp1
|
UTSW |
4 |
56,786,620 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R2153:Elp1
|
UTSW |
4 |
56,779,636 (GRCm39) |
splice site |
probably null |
|
|
R2263:Elp1
|
UTSW |
4 |
56,755,298 (GRCm39) |
splice site |
probably null |
|
|
R2325:Elp1
|
UTSW |
4 |
56,784,622 (GRCm39) |
missense |
probably benign |
0.00 |
|
R2333:Elp1
|
UTSW |
4 |
56,775,456 (GRCm39) |
missense |
probably benign |
0.28 |
|
R3151:Elp1
|
UTSW |
4 |
56,770,985 (GRCm39) |
missense |
probably benign |
0.24 |
|
R3622:Elp1
|
UTSW |
4 |
56,759,925 (GRCm39) |
splice site |
probably null |
|
|
R3624:Elp1
|
UTSW |
4 |
56,798,708 (GRCm39) |
missense |
possibly damaging |
0.52 |
|
R3889:Elp1
|
UTSW |
4 |
56,759,852 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4007:Elp1
|
UTSW |
4 |
56,794,139 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4196:Elp1
|
UTSW |
4 |
56,755,353 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4794:Elp1
|
UTSW |
4 |
56,781,176 (GRCm39) |
small deletion |
probably benign |
|
|
R5330:Elp1
|
UTSW |
4 |
56,800,001 (GRCm39) |
missense |
probably benign |
0.01 |
|
R5331:Elp1
|
UTSW |
4 |
56,800,001 (GRCm39) |
missense |
probably benign |
0.01 |
|
R5360:Elp1
|
UTSW |
4 |
56,800,104 (GRCm39) |
missense |
probably benign |
0.06 |
|
R5362:Elp1
|
UTSW |
4 |
56,778,969 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5645:Elp1
|
UTSW |
4 |
56,776,920 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R5877:Elp1
|
UTSW |
4 |
56,787,807 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6268:Elp1
|
UTSW |
4 |
56,762,305 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6284:Elp1
|
UTSW |
4 |
56,762,281 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R6526:Elp1
|
UTSW |
4 |
56,798,812 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R6610:Elp1
|
UTSW |
4 |
56,758,236 (GRCm39) |
missense |
probably benign |
0.02 |
|
R6627:Elp1
|
UTSW |
4 |
56,784,647 (GRCm39) |
splice site |
probably null |
|
|
R6786:Elp1
|
UTSW |
4 |
56,771,555 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
R6823:Elp1
|
UTSW |
4 |
56,787,939 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7129:Elp1
|
UTSW |
4 |
56,787,944 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7157:Elp1
|
UTSW |
4 |
56,781,176 (GRCm39) |
small deletion |
probably benign |
|
|
R7180:Elp1
|
UTSW |
4 |
56,796,535 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7391:Elp1
|
UTSW |
4 |
56,781,212 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7391:Elp1
|
UTSW |
4 |
56,781,211 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
R7403:Elp1
|
UTSW |
4 |
56,778,994 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7432:Elp1
|
UTSW |
4 |
56,776,925 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7674:Elp1
|
UTSW |
4 |
56,792,075 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R7736:Elp1
|
UTSW |
4 |
56,776,920 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R7755:Elp1
|
UTSW |
4 |
56,774,552 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
R7760:Elp1
|
UTSW |
4 |
56,790,892 (GRCm39) |
missense |
probably benign |
0.20 |
|
R7849:Elp1
|
UTSW |
4 |
56,758,968 (GRCm39) |
missense |
possibly damaging |
0.65 |
|
R7959:Elp1
|
UTSW |
4 |
56,774,737 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7970:Elp1
|
UTSW |
4 |
56,771,466 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8324:Elp1
|
UTSW |
4 |
56,772,491 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8456:Elp1
|
UTSW |
4 |
56,781,176 (GRCm39) |
small deletion |
probably benign |
|
|
R8671:Elp1
|
UTSW |
4 |
56,771,453 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9245:Elp1
|
UTSW |
4 |
56,771,003 (GRCm39) |
missense |
probably benign |
0.01 |
|
R9562:Elp1
|
UTSW |
4 |
56,772,521 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9565:Elp1
|
UTSW |
4 |
56,772,521 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9568:Elp1
|
UTSW |
4 |
56,786,711 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1176:Elp1
|
UTSW |
4 |
56,790,146 (GRCm39) |
missense |
probably benign |
0.00 |
|
| Posted On |
2015-04-16 |
Incidental Mutation