Incidental Mutation 'IGL02270:Vmn1r199'
ID |
287085 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Vmn1r199
|
Ensembl Gene |
ENSMUSG00000069292 |
Gene Name |
vomeronasal 1 receptor 199 |
Synonyms |
V1rh4 |
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.063)
|
Stock # |
IGL02270
|
Quality Score |
|
Status
|
|
Chromosome |
13 |
Chromosomal Location |
22566708-22567811 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to A
at 22567176 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Serine to Threonine
at position 114
(S114T)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000153996
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000091732]
[ENSMUST00000227685]
[ENSMUST00000227689]
[ENSMUST00000227846]
|
AlphaFold |
Q8R280 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000091732
AA Change: S157T
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000089326 Gene: ENSMUSG00000069292 AA Change: S157T
Domain | Start | End | E-Value | Type |
low complexity region
|
26 |
37 |
N/A |
INTRINSIC |
Pfam:TAS2R
|
43 |
338 |
3.3e-7 |
PFAM |
Pfam:V1R
|
75 |
340 |
1.6e-33 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000120663
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000227685
AA Change: S157T
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000227689
AA Change: S114T
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000227846
AA Change: S114T
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
Coding Region Coverage |
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 33 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Adgrv1 |
T |
C |
13: 81,707,314 (GRCm39) |
|
probably null |
Het |
Bmi1 |
T |
A |
2: 18,689,269 (GRCm39) |
S318T |
probably benign |
Het |
Cntnap5c |
G |
A |
17: 58,341,848 (GRCm39) |
V180I |
probably benign |
Het |
Cyp2b10 |
A |
G |
7: 25,613,362 (GRCm39) |
E186G |
probably damaging |
Het |
Ddx25 |
G |
T |
9: 35,465,708 (GRCm39) |
|
probably benign |
Het |
Dis3 |
A |
G |
14: 99,315,790 (GRCm39) |
F901L |
probably benign |
Het |
Dnah7a |
T |
A |
1: 53,512,052 (GRCm39) |
N3003I |
possibly damaging |
Het |
Ebf2 |
A |
G |
14: 67,476,402 (GRCm39) |
D124G |
probably damaging |
Het |
Efcab5 |
A |
T |
11: 76,995,139 (GRCm39) |
I1144N |
probably damaging |
Het |
Exoc4 |
G |
A |
6: 33,556,961 (GRCm39) |
V489I |
possibly damaging |
Het |
Garem1 |
A |
G |
18: 21,281,507 (GRCm39) |
V283A |
probably damaging |
Het |
Gfra2 |
G |
A |
14: 71,163,347 (GRCm39) |
R210H |
possibly damaging |
Het |
Gli3 |
T |
C |
13: 15,901,371 (GRCm39) |
|
probably benign |
Het |
Gm7247 |
A |
T |
14: 51,759,341 (GRCm39) |
M107L |
probably benign |
Het |
Map2k5 |
A |
T |
9: 63,229,479 (GRCm39) |
|
probably null |
Het |
Mki67 |
C |
T |
7: 135,300,361 (GRCm39) |
D1558N |
probably damaging |
Het |
Mylk4 |
A |
G |
13: 32,913,049 (GRCm39) |
|
probably benign |
Het |
Or14j9 |
G |
T |
17: 37,874,471 (GRCm39) |
H244N |
possibly damaging |
Het |
Or1e16 |
A |
G |
11: 73,286,191 (GRCm39) |
V219A |
probably benign |
Het |
Or52n5 |
A |
G |
7: 104,588,576 (GRCm39) |
N281S |
possibly damaging |
Het |
Or6a2 |
A |
T |
7: 106,600,630 (GRCm39) |
C146S |
probably damaging |
Het |
Plcd1 |
T |
C |
9: 118,913,709 (GRCm39) |
T50A |
probably damaging |
Het |
Rasgrp3 |
A |
G |
17: 75,823,368 (GRCm39) |
R480G |
probably benign |
Het |
Ripor3 |
T |
C |
2: 167,835,416 (GRCm39) |
E185G |
probably damaging |
Het |
S1pr3 |
T |
C |
13: 51,573,092 (GRCm39) |
I91T |
probably benign |
Het |
Slc26a4 |
C |
T |
12: 31,578,853 (GRCm39) |
|
probably benign |
Het |
Slc28a3 |
T |
C |
13: 58,728,398 (GRCm39) |
T104A |
probably benign |
Het |
Slc6a11 |
A |
G |
6: 114,215,357 (GRCm39) |
D419G |
probably damaging |
Het |
St3gal2 |
A |
G |
8: 111,684,398 (GRCm39) |
I19V |
probably benign |
Het |
Sycp1 |
C |
A |
3: 102,803,259 (GRCm39) |
C517F |
probably benign |
Het |
Trav15-1-dv6-1 |
G |
A |
14: 53,797,455 (GRCm39) |
E35K |
possibly damaging |
Het |
Vmn1r121 |
T |
C |
7: 20,832,401 (GRCm39) |
E13G |
probably damaging |
Het |
Vmn2r129 |
T |
C |
4: 156,686,950 (GRCm39) |
|
noncoding transcript |
Het |
|
Other mutations in Vmn1r199 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00930:Vmn1r199
|
APN |
13 |
22,567,029 (GRCm39) |
missense |
possibly damaging |
0.64 |
IGL01959:Vmn1r199
|
APN |
13 |
22,567,290 (GRCm39) |
missense |
probably benign |
0.07 |
IGL02687:Vmn1r199
|
APN |
13 |
22,566,961 (GRCm39) |
missense |
possibly damaging |
0.91 |
IGL03143:Vmn1r199
|
APN |
13 |
22,567,299 (GRCm39) |
missense |
probably damaging |
1.00 |
R0528:Vmn1r199
|
UTSW |
13 |
22,566,736 (GRCm39) |
missense |
probably benign |
|
R1411:Vmn1r199
|
UTSW |
13 |
22,567,671 (GRCm39) |
missense |
probably benign |
0.01 |
R2075:Vmn1r199
|
UTSW |
13 |
22,567,435 (GRCm39) |
missense |
probably damaging |
1.00 |
R5057:Vmn1r199
|
UTSW |
13 |
22,567,575 (GRCm39) |
missense |
possibly damaging |
0.93 |
R5824:Vmn1r199
|
UTSW |
13 |
22,567,748 (GRCm39) |
missense |
probably benign |
|
R5977:Vmn1r199
|
UTSW |
13 |
22,567,416 (GRCm39) |
missense |
probably benign |
0.08 |
R6019:Vmn1r199
|
UTSW |
13 |
22,566,769 (GRCm39) |
missense |
possibly damaging |
0.85 |
R6419:Vmn1r199
|
UTSW |
13 |
22,567,777 (GRCm39) |
missense |
possibly damaging |
0.66 |
R7624:Vmn1r199
|
UTSW |
13 |
22,566,906 (GRCm39) |
missense |
probably benign |
0.00 |
R7637:Vmn1r199
|
UTSW |
13 |
22,566,845 (GRCm39) |
missense |
probably benign |
0.05 |
R8505:Vmn1r199
|
UTSW |
13 |
22,567,317 (GRCm39) |
missense |
probably benign |
0.01 |
R8692:Vmn1r199
|
UTSW |
13 |
22,567,809 (GRCm39) |
makesense |
probably null |
|
R8735:Vmn1r199
|
UTSW |
13 |
22,567,537 (GRCm39) |
missense |
probably damaging |
1.00 |
R8791:Vmn1r199
|
UTSW |
13 |
22,567,687 (GRCm39) |
missense |
probably damaging |
1.00 |
R9054:Vmn1r199
|
UTSW |
13 |
22,567,724 (GRCm39) |
missense |
possibly damaging |
0.95 |
R9258:Vmn1r199
|
UTSW |
13 |
22,566,822 (GRCm39) |
missense |
possibly damaging |
0.53 |
R9586:Vmn1r199
|
UTSW |
13 |
22,567,716 (GRCm39) |
missense |
probably benign |
|
|
Posted On |
2015-04-16 |