Incidental Mutation 'IGL00916:Tnfaip2'
ID 28720
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Tnfaip2
Ensembl Gene ENSMUSG00000021281
Gene Name tumor necrosis factor, alpha-induced protein 2
Synonyms M-sec, Tnfip2, Exoc3l3
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # IGL00916
Quality Score
Status
Chromosome 12
Chromosomal Location 111408903-111421452 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to G at 111419983 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Arginine at position 705 (I705R)
Ref Sequence ENSEMBL: ENSMUSP00000105415 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000102745] [ENSMUST00000109792] [ENSMUST00000174298] [ENSMUST00000172783]
AlphaFold Q61333
Predicted Effect probably damaging
Transcript: ENSMUST00000102745
AA Change: I688R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000099806
Gene: ENSMUSG00000021281
AA Change: I688R

DomainStartEndE-ValueType
low complexity region 32 48 N/A INTRINSIC
low complexity region 60 72 N/A INTRINSIC
low complexity region 83 89 N/A INTRINSIC
low complexity region 141 147 N/A INTRINSIC
Pfam:Sec6 157 688 1.3e-111 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000109792
AA Change: I705R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000105415
Gene: ENSMUSG00000021281
AA Change: I705R

DomainStartEndE-ValueType
low complexity region 32 48 N/A INTRINSIC
low complexity region 60 72 N/A INTRINSIC
low complexity region 83 89 N/A INTRINSIC
low complexity region 141 147 N/A INTRINSIC
Pfam:Sec6 157 705 1.7e-107 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000127028
Predicted Effect noncoding transcript
Transcript: ENSMUST00000127207
Predicted Effect noncoding transcript
Transcript: ENSMUST00000133865
Predicted Effect noncoding transcript
Transcript: ENSMUST00000156003
Predicted Effect probably benign
Transcript: ENSMUST00000174692
Predicted Effect probably benign
Transcript: ENSMUST00000174298
SMART Domains Protein: ENSMUSP00000133317
Gene: ENSMUSG00000021281

DomainStartEndE-ValueType
low complexity region 14 30 N/A INTRINSIC
low complexity region 42 54 N/A INTRINSIC
low complexity region 65 71 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000221429
Predicted Effect probably benign
Transcript: ENSMUST00000173581
Predicted Effect probably benign
Transcript: ENSMUST00000172783
SMART Domains Protein: ENSMUSP00000133635
Gene: ENSMUSG00000021281

DomainStartEndE-ValueType
low complexity region 32 48 N/A INTRINSIC
low complexity region 60 72 N/A INTRINSIC
low complexity region 83 89 N/A INTRINSIC
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene was identified as a gene whose expression can be induced by the tumor necrosis factor alpha (TNF) in umbilical vein endothelial cells. The expression of this gene was shown to be induced by retinoic acid in a cell line expressing a oncogenic version of the retinoic acid receptor alpha fusion protein, which suggested that this gene may be a retinoic acid target gene in acute promyelocytic leukemia. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 32 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aass T A 6: 23,075,851 (GRCm39) Q762L probably benign Het
Aldh1a1 T C 19: 20,597,361 (GRCm39) V114A probably benign Het
Ano4 T C 10: 88,833,960 (GRCm39) I459V probably benign Het
Atad5 C T 11: 80,009,826 (GRCm39) P1199S probably damaging Het
Bmp10 T C 6: 87,406,142 (GRCm39) F43S possibly damaging Het
Cd96 T C 16: 45,861,675 (GRCm39) E505G probably benign Het
Eapp T C 12: 54,739,593 (GRCm39) T75A possibly damaging Het
Emilin1 T C 5: 31,071,246 (GRCm39) Y10H probably damaging Het
Ercc6 A G 14: 32,284,612 (GRCm39) probably benign Het
Gucy2e T C 11: 69,113,923 (GRCm39) I1089V possibly damaging Het
H6pd C A 4: 150,078,925 (GRCm39) probably null Het
Igsf10 A T 3: 59,238,548 (GRCm39) F544L probably damaging Het
Il23r T C 6: 67,450,915 (GRCm39) Y188C probably damaging Het
Ilrun A G 17: 27,986,893 (GRCm39) Y278H probably damaging Het
Inpp5j T C 11: 3,452,389 (GRCm39) E287G probably damaging Het
Lrp6 T C 6: 134,461,252 (GRCm39) D735G probably damaging Het
Mast2 A T 4: 116,184,830 (GRCm39) M240K possibly damaging Het
Mreg T A 1: 72,203,291 (GRCm39) T96S probably benign Het
Mta2 A T 19: 8,924,465 (GRCm39) M220L probably benign Het
Mycbp2 A G 14: 103,528,719 (GRCm39) probably benign Het
Naip2 T A 13: 100,297,939 (GRCm39) N699I probably damaging Het
Ncapg T G 5: 45,828,534 (GRCm39) I95S probably benign Het
Ndufa13 A G 8: 70,347,069 (GRCm39) probably benign Het
Nol10 T A 12: 17,411,130 (GRCm39) probably benign Het
Parp8 T A 13: 117,063,859 (GRCm39) I85F probably damaging Het
Rgs2 T A 1: 143,877,967 (GRCm39) I78F probably damaging Het
Rpia C T 6: 70,752,086 (GRCm39) probably benign Het
Sec63 T C 10: 42,688,453 (GRCm39) S488P possibly damaging Het
Tfcp2 T G 15: 100,418,559 (GRCm39) H201P probably damaging Het
Ttf1 A G 2: 28,960,054 (GRCm39) N554S probably benign Het
Ulk1 A G 5: 110,940,877 (GRCm39) S351P probably damaging Het
Zp2 T A 7: 119,737,397 (GRCm39) N264Y probably damaging Het
Other mutations in Tnfaip2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01352:Tnfaip2 APN 12 111,412,053 (GRCm39) missense probably damaging 1.00
IGL02550:Tnfaip2 APN 12 111,412,535 (GRCm39) missense probably damaging 1.00
R0103:Tnfaip2 UTSW 12 111,412,244 (GRCm39) missense probably benign 0.38
R0145:Tnfaip2 UTSW 12 111,412,292 (GRCm39) missense possibly damaging 0.87
R0324:Tnfaip2 UTSW 12 111,419,893 (GRCm39) missense probably damaging 1.00
R0609:Tnfaip2 UTSW 12 111,419,941 (GRCm39) missense probably benign 0.01
R0837:Tnfaip2 UTSW 12 111,417,141 (GRCm39) missense probably damaging 1.00
R1353:Tnfaip2 UTSW 12 111,411,403 (GRCm39) missense probably damaging 1.00
R1366:Tnfaip2 UTSW 12 111,415,756 (GRCm39) missense probably benign 0.00
R1988:Tnfaip2 UTSW 12 111,416,325 (GRCm39) critical splice donor site probably null
R2109:Tnfaip2 UTSW 12 111,414,527 (GRCm39) missense probably damaging 1.00
R2147:Tnfaip2 UTSW 12 111,412,456 (GRCm39) missense probably damaging 1.00
R4003:Tnfaip2 UTSW 12 111,417,778 (GRCm39) splice site probably benign
R4402:Tnfaip2 UTSW 12 111,416,285 (GRCm39) missense probably benign 0.43
R4690:Tnfaip2 UTSW 12 111,411,682 (GRCm39) missense possibly damaging 0.66
R4718:Tnfaip2 UTSW 12 111,412,463 (GRCm39) missense possibly damaging 0.95
R5271:Tnfaip2 UTSW 12 111,414,894 (GRCm39) intron probably benign
R6478:Tnfaip2 UTSW 12 111,412,097 (GRCm39) missense probably damaging 1.00
R7623:Tnfaip2 UTSW 12 111,412,072 (GRCm39) missense probably damaging 0.98
R8951:Tnfaip2 UTSW 12 111,412,310 (GRCm39) missense probably benign 0.01
R9168:Tnfaip2 UTSW 12 111,411,382 (GRCm39) missense probably damaging 1.00
R9407:Tnfaip2 UTSW 12 111,412,161 (GRCm39) missense probably benign
R9607:Tnfaip2 UTSW 12 111,412,069 (GRCm39) missense possibly damaging 0.91
Posted On 2013-04-17