Incidental Mutation 'IGL02305:Ogfod2'
ID |
287564 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Ogfod2
|
Ensembl Gene |
ENSMUSG00000023707 |
Gene Name |
2-oxoglutarate and iron-dependent oxygenase domain containing 2 |
Synonyms |
1300006G11Rik, 5730405M13Rik |
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.118)
|
Stock # |
IGL02305
|
Quality Score |
|
Status
|
|
Chromosome |
5 |
Chromosomal Location |
124250384-124253544 bp(+) (GRCm39) |
Type of Mutation |
critical splice donor site (2 bp from exon) |
DNA Base Change (assembly) |
T to C
at 124250910 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000024470]
[ENSMUST00000031351]
[ENSMUST00000119269]
[ENSMUST00000122394]
[ENSMUST00000198505]
[ENSMUST00000196627]
[ENSMUST00000198770]
[ENSMUST00000145667]
[ENSMUST00000196401]
[ENSMUST00000149835]
|
AlphaFold |
Q9CQ04 |
Predicted Effect |
probably null
Transcript: ENSMUST00000024470
|
SMART Domains |
Protein: ENSMUSP00000024470 Gene: ENSMUSG00000023707
Domain | Start | End | E-Value | Type |
low complexity region
|
2 |
16 |
N/A |
INTRINSIC |
Blast:P4Hc
|
42 |
100 |
2e-6 |
BLAST |
low complexity region
|
102 |
112 |
N/A |
INTRINSIC |
P4Hc
|
136 |
307 |
7.91e-26 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000031351
|
SMART Domains |
Protein: ENSMUSP00000031351 Gene: ENSMUSG00000029404
Domain | Start | End | E-Value | Type |
Pfam:SR-25
|
7 |
227 |
2.7e-104 |
PFAM |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000119269
|
SMART Domains |
Protein: ENSMUSP00000112701 Gene: ENSMUSG00000023707
Domain | Start | End | E-Value | Type |
low complexity region
|
2 |
16 |
N/A |
INTRINSIC |
Blast:P4Hc
|
42 |
133 |
1e-22 |
BLAST |
Blast:P4Hc
|
136 |
175 |
1e-20 |
BLAST |
low complexity region
|
176 |
187 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000122394
|
SMART Domains |
Protein: ENSMUSP00000112506 Gene: ENSMUSG00000029404
Domain | Start | End | E-Value | Type |
Pfam:SR-25
|
2 |
199 |
6.3e-85 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000127989
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000130140
|
Predicted Effect |
probably null
Transcript: ENSMUST00000198505
|
SMART Domains |
Protein: ENSMUSP00000142965 Gene: ENSMUSG00000023707
Domain | Start | End | E-Value | Type |
low complexity region
|
2 |
11 |
N/A |
INTRINSIC |
low complexity region
|
30 |
45 |
N/A |
INTRINSIC |
low complexity region
|
48 |
61 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000199457
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000131094
|
Predicted Effect |
probably null
Transcript: ENSMUST00000196627
|
SMART Domains |
Protein: ENSMUSP00000143698 Gene: ENSMUSG00000023707
Domain | Start | End | E-Value | Type |
low complexity region
|
2 |
16 |
N/A |
INTRINSIC |
Blast:P4Hc
|
42 |
133 |
1e-23 |
BLAST |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000198770
|
SMART Domains |
Protein: ENSMUSP00000143318 Gene: ENSMUSG00000023707
Domain | Start | End | E-Value | Type |
Blast:P4Hc
|
11 |
102 |
7e-24 |
BLAST |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000143062
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000136955
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000148365
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000145667
|
SMART Domains |
Protein: ENSMUSP00000122377 Gene: ENSMUSG00000029404
Domain | Start | End | E-Value | Type |
Pfam:SR-25
|
19 |
227 |
3e-86 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000196401
|
SMART Domains |
Protein: ENSMUSP00000142496 Gene: ENSMUSG00000029404
Domain | Start | End | E-Value | Type |
low complexity region
|
29 |
50 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000149835
|
SMART Domains |
Protein: ENSMUSP00000116269 Gene: ENSMUSG00000029404
Domain | Start | End | E-Value | Type |
low complexity region
|
5 |
32 |
N/A |
INTRINSIC |
SCOP:d1l9ha_
|
58 |
84 |
7e-3 |
SMART |
|
Coding Region Coverage |
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 37 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Adamts16 |
G |
A |
13: 70,921,048 (GRCm39) |
T599I |
probably damaging |
Het |
Ahi1 |
A |
G |
10: 20,846,796 (GRCm39) |
T409A |
probably benign |
Het |
Apol10b |
T |
A |
15: 77,469,630 (GRCm39) |
R182S |
possibly damaging |
Het |
Arhgap35 |
A |
G |
7: 16,297,590 (GRCm39) |
F492L |
probably benign |
Het |
Ccdc136 |
A |
G |
6: 29,406,173 (GRCm39) |
D173G |
probably damaging |
Het |
Ccndbp1 |
T |
C |
2: 120,841,933 (GRCm39) |
L67P |
probably damaging |
Het |
Dync2h1 |
C |
T |
9: 7,122,678 (GRCm39) |
V2093I |
probably benign |
Het |
Eps15l1 |
T |
C |
8: 73,140,853 (GRCm39) |
K213R |
probably null |
Het |
Fat4 |
A |
T |
3: 39,064,137 (GRCm39) |
N4698Y |
probably damaging |
Het |
Frmpd1 |
G |
T |
4: 45,249,209 (GRCm39) |
R133L |
probably damaging |
Het |
Gdi2 |
T |
A |
13: 3,606,428 (GRCm39) |
M158K |
probably damaging |
Het |
Hoxc8 |
A |
G |
15: 102,901,025 (GRCm39) |
Y156C |
probably damaging |
Het |
Iho1 |
A |
T |
9: 108,283,031 (GRCm39) |
M219K |
possibly damaging |
Het |
Kcnh2 |
T |
C |
5: 24,527,658 (GRCm39) |
D898G |
possibly damaging |
Het |
Kng2 |
T |
C |
16: 22,819,374 (GRCm39) |
|
probably benign |
Het |
Men1 |
T |
C |
19: 6,390,168 (GRCm39) |
L566P |
probably damaging |
Het |
Mtmr2 |
T |
C |
9: 13,706,551 (GRCm39) |
W153R |
probably damaging |
Het |
Mug2 |
T |
G |
6: 122,013,015 (GRCm39) |
L309R |
probably benign |
Het |
Myo7a |
A |
G |
7: 97,700,836 (GRCm39) |
*2165R |
probably null |
Het |
Or8b48 |
C |
T |
9: 38,492,809 (GRCm39) |
P79S |
probably damaging |
Het |
Or8g20 |
A |
T |
9: 39,396,333 (GRCm39) |
I72N |
probably damaging |
Het |
Pard6g |
T |
C |
18: 80,160,985 (GRCm39) |
L366P |
probably damaging |
Het |
Pdlim4 |
A |
T |
11: 53,946,759 (GRCm39) |
L117H |
probably damaging |
Het |
Pkd1l1 |
G |
A |
11: 8,852,467 (GRCm39) |
A672V |
probably benign |
Het |
Pomt2 |
A |
G |
12: 87,164,703 (GRCm39) |
|
probably benign |
Het |
Prpf4 |
T |
A |
4: 62,333,633 (GRCm39) |
|
probably benign |
Het |
Rad17 |
C |
T |
13: 100,770,370 (GRCm39) |
|
probably null |
Het |
Ryr3 |
T |
A |
2: 112,475,622 (GRCm39) |
I4499F |
probably damaging |
Het |
Sav1 |
A |
G |
12: 70,033,550 (GRCm39) |
|
probably benign |
Het |
Scube1 |
A |
T |
15: 83,491,591 (GRCm39) |
F887I |
probably damaging |
Het |
Slc5a6 |
T |
C |
5: 31,195,179 (GRCm39) |
S473G |
probably benign |
Het |
Taf1b |
T |
C |
12: 24,594,270 (GRCm39) |
S268P |
possibly damaging |
Het |
Tmem135 |
A |
T |
7: 88,814,331 (GRCm39) |
|
probably null |
Het |
Vmn2r104 |
A |
T |
17: 20,263,118 (GRCm39) |
N114K |
probably benign |
Het |
Ypel5 |
A |
T |
17: 73,155,591 (GRCm39) |
Y53F |
probably benign |
Het |
Zfp438 |
A |
G |
18: 5,213,674 (GRCm39) |
V428A |
possibly damaging |
Het |
Zzef1 |
T |
C |
11: 72,757,423 (GRCm39) |
|
probably benign |
Het |
|
Other mutations in Ogfod2 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL03304:Ogfod2
|
APN |
5 |
124,250,886 (GRCm39) |
missense |
probably damaging |
0.99 |
R0018:Ogfod2
|
UTSW |
5 |
124,252,588 (GRCm39) |
unclassified |
probably benign |
|
R0681:Ogfod2
|
UTSW |
5 |
124,250,907 (GRCm39) |
missense |
probably null |
1.00 |
R0751:Ogfod2
|
UTSW |
5 |
124,251,539 (GRCm39) |
unclassified |
probably benign |
|
R1744:Ogfod2
|
UTSW |
5 |
124,252,219 (GRCm39) |
splice site |
probably null |
|
R1800:Ogfod2
|
UTSW |
5 |
124,253,019 (GRCm39) |
missense |
probably damaging |
1.00 |
R2211:Ogfod2
|
UTSW |
5 |
124,250,843 (GRCm39) |
splice site |
probably null |
|
R3977:Ogfod2
|
UTSW |
5 |
124,251,272 (GRCm39) |
splice site |
probably null |
|
R4346:Ogfod2
|
UTSW |
5 |
124,251,357 (GRCm39) |
missense |
probably damaging |
1.00 |
R4508:Ogfod2
|
UTSW |
5 |
124,251,317 (GRCm39) |
nonsense |
probably null |
|
R4537:Ogfod2
|
UTSW |
5 |
124,252,591 (GRCm39) |
unclassified |
probably benign |
|
R5795:Ogfod2
|
UTSW |
5 |
124,252,824 (GRCm39) |
missense |
probably damaging |
1.00 |
R6647:Ogfod2
|
UTSW |
5 |
124,252,866 (GRCm39) |
missense |
possibly damaging |
0.95 |
R7101:Ogfod2
|
UTSW |
5 |
124,252,558 (GRCm39) |
missense |
unknown |
|
R8001:Ogfod2
|
UTSW |
5 |
124,252,946 (GRCm39) |
missense |
probably damaging |
1.00 |
R8139:Ogfod2
|
UTSW |
5 |
124,251,538 (GRCm39) |
missense |
possibly damaging |
0.69 |
R9080:Ogfod2
|
UTSW |
5 |
124,253,007 (GRCm39) |
missense |
probably damaging |
0.99 |
R9258:Ogfod2
|
UTSW |
5 |
124,250,505 (GRCm39) |
missense |
probably benign |
|
R9619:Ogfod2
|
UTSW |
5 |
124,252,470 (GRCm39) |
missense |
probably damaging |
1.00 |
R9675:Ogfod2
|
UTSW |
5 |
124,252,452 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Posted On |
2015-04-16 |