Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02314:Hgfac'

287980

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Hgfac

Ensembl Gene

ENSMUSG00000029102

Gene Name

hepatocyte growth factor activator

Synonyms

HGFA

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.071) question?

Stock #

IGL02314

Quality Score

Status

Chromosome

Chromosomal Location

35198853-35205805 bp(+) (GRCm39)

Type of Mutation

start codon destroyed

DNA Base Change (assembly)

A to T at 35198941 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Leucine at position 1 (M1L)

Ref Sequence

ENSEMBL: ENSMUSP00000030985 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030985] [ENSMUST00000087684] [ENSMUST00000114283] [ENSMUST00000114285] [ENSMUST00000202573]

AlphaFold

Q9R098

Predicted Effect

probably benign
Transcript: ENSMUST00000030985
AA Change: M1L

PolyPhen 2 Score 0.210 (Sensitivity: 0.92; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000030985
Gene: ENSMUSG00000029102
AA Change: M1L

Domain	Start	End	E-Value	Type
signal peptide	1	32	N/A	INTRINSIC
low complexity region	43	59	N/A	INTRINSIC
low complexity region	85	93	N/A	INTRINSIC
FN2	98	145	7.31e-27	SMART
EGF	160	195	2.11e-4	SMART
Pfam:fn1	199	234	7.7e-11	PFAM
EGF	241	276	1.69e-3	SMART
KR	281	366	5.2e-36	SMART
Tryp_SPc	405	639	2.07e-90	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000087684

SMART Domains

Protein: ENSMUSP00000084970
Gene: ENSMUSG00000029101

Domain	Start	End	E-Value	Type
PDZ	29	98	5.25e-18	SMART
PTB	224	373	5.05e-28	SMART
low complexity region	443	456	N/A	INTRINSIC
low complexity region	643	661	N/A	INTRINSIC
low complexity region	685	697	N/A	INTRINSIC
RGS	715	832	2.84e-41	SMART
Pfam:RGS12_us1	836	953	4.3e-61	PFAM
RBD	962	1032	3.12e-28	SMART
RBD	1034	1104	2.44e-21	SMART
Pfam:RGS12_us2	1106	1180	2.4e-37	PFAM
GoLoco	1187	1209	9.74e-9	SMART
Pfam:RGS12_usC	1238	1379	9.2e-49	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000114283

SMART Domains

Protein: ENSMUSP00000109922
Gene: ENSMUSG00000029101

Domain	Start	End	E-Value	Type
low complexity region	27	39	N/A	INTRINSIC
RGS	57	174	2.84e-41	SMART
low complexity region	191	207	N/A	INTRINSIC
low complexity region	210	222	N/A	INTRINSIC
low complexity region	253	270	N/A	INTRINSIC
RBD	304	374	3.12e-28	SMART
RBD	376	446	2.44e-21	SMART
GoLoco	529	551	9.74e-9	SMART
low complexity region	601	622	N/A	INTRINSIC
low complexity region	634	650	N/A	INTRINSIC
low complexity region	697	729	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000114285

SMART Domains

Protein: ENSMUSP00000109924
Gene: ENSMUSG00000029101

Domain	Start	End	E-Value	Type
low complexity region	37	49	N/A	INTRINSIC
RGS	67	184	2.84e-41	SMART
low complexity region	201	217	N/A	INTRINSIC
low complexity region	220	232	N/A	INTRINSIC
low complexity region	263	280	N/A	INTRINSIC
RBD	314	384	3.12e-28	SMART
RBD	386	456	2.44e-21	SMART
GoLoco	539	561	9.74e-9	SMART
low complexity region	611	632	N/A	INTRINSIC
low complexity region	644	660	N/A	INTRINSIC
low complexity region	707	739	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000150139

SMART Domains

Protein: ENSMUSP00000117158
Gene: ENSMUSG00000029101

Domain	Start	End	E-Value	Type
Blast:RBD	2	33	5e-13	BLAST
Pfam:RGS12_us2	35	80	5.8e-13	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000201038

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000201994

Predicted Effect

unknown
Transcript: ENSMUST00000202573
AA Change: M1L

SMART Domains

Protein: ENSMUSP00000144344
Gene: ENSMUSG00000029102
AA Change: M1L

Domain	Start	End	E-Value	Type
signal peptide	1	34	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000202126

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000202168

Predicted Effect

probably benign
Transcript: ENSMUST00000202921

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: This gene encodes a serine protease enzyme that proteolytically activates hepatocyte growth factor (HGF) and plays a vital role in the regulation of HGF activity in the regeneration and repair of various tissues. The encoded protein is an inactive zymogen that is proteolytically activated to generate a heterodimeric enzyme consisting of a short chain and a long chain linked by a disulfide bridge. Mice lacking the encoded protein display an impairment in mucosal regeneration after injury. [provided by RefSeq, Jul 2015]
PHENOTYPE: Homozygous null mice display impaired intestinal regeneration and increased mortality after intestinal injury. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Alg2	T	A	4: 47,472,143 (GRCm39)	K94*	probably null	Het
Axl	A	G	7: 25,486,345 (GRCm39)	F120L	possibly damaging	Het
Baz2b	A	G	2: 59,792,571 (GRCm39)	V519A	probably benign	Het
Cdk2	A	T	10: 128,539,595 (GRCm39)	I99N	probably damaging	Het
Ces1b	C	A	8: 93,791,524 (GRCm39)	W358C	possibly damaging	Het
Cimap1b	T	G	15: 89,262,372 (GRCm39)	K82N	probably damaging	Het
Clca3b	A	G	3: 144,533,903 (GRCm39)		probably benign	Het
Col6a4	T	G	9: 105,874,355 (GRCm39)	T2211P	probably damaging	Het
Cyp4f14	C	T	17: 33,125,265 (GRCm39)	E438K	probably benign	Het
Dpy19l4	T	A	4: 11,267,720 (GRCm39)	T407S	possibly damaging	Het
Dtx3	G	A	10: 127,026,828 (GRCm39)		probably benign	Het
Eif1ad14	T	A	12: 87,886,377 (GRCm39)	Y84F	probably benign	Het
Fat3	A	T	9: 15,881,134 (GRCm39)	L3246H	possibly damaging	Het
Fat4	A	T	3: 38,941,779 (GRCm39)	D224V	probably damaging	Het
Fndc9	A	T	11: 46,129,122 (GRCm39)	I214F	probably benign	Het
Foxred1	A	T	9: 35,117,264 (GRCm39)	I22N	probably damaging	Het
Gkn1	T	C	6: 87,326,103 (GRCm39)	D29G	probably benign	Het
Gng11	T	A	6: 4,004,317 (GRCm39)	M1K	probably null	Het
Hdac7	T	C	15: 97,706,885 (GRCm39)	D237G	probably damaging	Het
Hgf	A	G	5: 16,777,600 (GRCm39)	Y199C	probably damaging	Het
Hsd17b6	T	C	10: 127,833,777 (GRCm39)	T35A	probably damaging	Het
Htr3a	G	A	9: 48,815,927 (GRCm39)	P170L	probably damaging	Het
Ighv12-3	A	G	12: 114,330,421 (GRCm39)	S25P	probably damaging	Het
Jph2	A	T	2: 163,239,273 (GRCm39)	N58K	probably damaging	Het
Lama5	A	G	2: 179,836,275 (GRCm39)		probably benign	Het
Lpin3	T	A	2: 160,740,638 (GRCm39)	Y394*	probably null	Het
Macf1	G	T	4: 123,338,630 (GRCm39)	T2248K	probably damaging	Het
Map3k2	A	G	18: 32,351,553 (GRCm39)		probably benign	Het
Map4k5	G	A	12: 69,865,213 (GRCm39)	P524S	probably benign	Het
Mcf2l	C	T	8: 13,051,851 (GRCm39)	S359L	probably damaging	Het
Mdh1b	C	T	1: 63,750,273 (GRCm39)		probably null	Het
Mfhas1	G	A	8: 36,055,927 (GRCm39)	R134H	probably damaging	Het
Mogs	A	G	6: 83,095,036 (GRCm39)	T618A	probably benign	Het
Mybpc2	T	A	7: 44,171,812 (GRCm39)	Q39H	possibly damaging	Het
Myoc	C	T	1: 162,466,917 (GRCm39)	R29W	probably damaging	Het
Nae1	A	G	8: 105,252,938 (GRCm39)	M162T	probably damaging	Het
Nfatc3	A	G	8: 106,805,532 (GRCm39)	I126V	probably benign	Het
Nxnl2	C	A	13: 51,325,565 (GRCm39)	F69L	probably benign	Het
Oca2	T	A	7: 56,006,899 (GRCm39)	I662N	probably benign	Het
Or52b3	A	T	7: 102,204,318 (GRCm39)	I276F	probably damaging	Het
Or5w8	A	G	2: 87,688,400 (GRCm39)	N294D	probably damaging	Het
Or7c70	A	T	10: 78,683,099 (GRCm39)	S217T	probably damaging	Het
Or7e176	A	T	9: 20,171,774 (GRCm39)	I213L	probably benign	Het
Pcdhb14	G	A	18: 37,583,248 (GRCm39)	E785K	probably benign	Het
Plb1	A	C	5: 32,438,492 (GRCm39)	Y209S	possibly damaging	Het
Pramel24	T	C	4: 143,455,012 (GRCm39)	S437P	probably benign	Het
Rab44	C	A	17: 29,358,327 (GRCm39)	Q172K	probably benign	Het
Rnf214	A	T	9: 45,811,105 (GRCm39)	V186E	probably benign	Het
Rps6ka1	C	A	4: 133,578,065 (GRCm39)	G522W	probably damaging	Het
Samhd1	G	T	2: 156,976,948 (GRCm39)	T21K	probably damaging	Het
Scly	A	G	1: 91,246,763 (GRCm39)	Y358C	probably benign	Het
Sfxn2	A	G	19: 46,571,026 (GRCm39)	N29D	possibly damaging	Het
Shank2	A	G	7: 143,965,008 (GRCm39)	D1451G	probably benign	Het
Slc44a5	G	A	3: 153,962,156 (GRCm39)	S363N	probably damaging	Het
Smg1	A	G	7: 117,753,932 (GRCm39)		probably benign	Het
Tas1r3	A	T	4: 155,945,119 (GRCm39)	C701S	probably damaging	Het
Tmem87a	A	G	2: 120,234,502 (GRCm39)	S14P	possibly damaging	Het
Trmt6	G	A	2: 132,647,378 (GRCm39)	A486V	probably benign	Het
Ttn	G	A	2: 76,727,091 (GRCm39)	R1602*	probably null	Het
Ush2a	A	G	1: 188,365,826 (GRCm39)	M2227V	probably benign	Het
Vmn2r96	A	T	17: 18,804,221 (GRCm39)	Q490H	probably benign	Het
Wdr19	G	T	5: 65,414,463 (GRCm39)	A1279S	probably benign	Het
Zbtb7c	G	A	18: 76,278,937 (GRCm39)	R465H	probably damaging	Het
Zfp473	T	C	7: 44,383,353 (GRCm39)	S326G	probably benign	Het

Other mutations in Hgfac

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00471:Hgfac	APN	5	35,203,870 (GRCm39)	missense	probably damaging	1.00
IGL01999:Hgfac	APN	5	35,202,155 (GRCm39)	missense	probably benign
IGL02133:Hgfac	APN	5	35,203,931 (GRCm39)	missense	probably damaging	1.00
IGL02337:Hgfac	APN	5	35,199,722 (GRCm39)	missense	probably benign	0.00
IGL02405:Hgfac	APN	5	35,201,824 (GRCm39)	missense	probably benign	0.19
IGL02451:Hgfac	APN	5	35,201,158 (GRCm39)	splice site	probably null
IGL02508:Hgfac	APN	5	35,204,564 (GRCm39)	missense	probably damaging	1.00
IGL02584:Hgfac	APN	5	35,201,305 (GRCm39)	unclassified	probably benign
IGL02986:Hgfac	APN	5	35,201,207 (GRCm39)	missense	probably benign	0.00
R0506:Hgfac	UTSW	5	35,201,584 (GRCm39)	missense	probably damaging	1.00
R0664:Hgfac	UTSW	5	35,205,522 (GRCm39)	missense	probably benign	0.34
R1733:Hgfac	UTSW	5	35,201,018 (GRCm39)	missense	probably damaging	1.00
R1775:Hgfac	UTSW	5	35,200,194 (GRCm39)	unclassified	probably benign
R1871:Hgfac	UTSW	5	35,200,257 (GRCm39)	makesense	probably null
R3826:Hgfac	UTSW	5	35,205,506 (GRCm39)	missense	probably damaging	1.00
R4553:Hgfac	UTSW	5	35,200,200 (GRCm39)	missense	probably damaging	0.97
R5888:Hgfac	UTSW	5	35,202,751 (GRCm39)	missense	probably damaging	1.00
R5905:Hgfac	UTSW	5	35,199,706 (GRCm39)	missense	probably benign	0.20
R6017:Hgfac	UTSW	5	35,201,739 (GRCm39)	missense	probably damaging	1.00
R6056:Hgfac	UTSW	5	35,198,973 (GRCm39)	nonsense	probably null
R6124:Hgfac	UTSW	5	35,201,728 (GRCm39)	missense	probably benign	0.06
R7059:Hgfac	UTSW	5	35,201,773 (GRCm39)	missense	possibly damaging	0.49
R7232:Hgfac	UTSW	5	35,204,258 (GRCm39)	missense	probably damaging	1.00
R7555:Hgfac	UTSW	5	35,199,972 (GRCm39)	missense	probably damaging	0.96
R8367:Hgfac	UTSW	5	35,202,790 (GRCm39)	missense	probably damaging	1.00
R8371:Hgfac	UTSW	5	35,202,787 (GRCm39)	missense	probably damaging	1.00
R9254:Hgfac	UTSW	5	35,202,133 (GRCm39)	missense	probably damaging	1.00
R9730:Hgfac	UTSW	5	35,204,282 (GRCm39)	missense	probably damaging	1.00

Posted On

2015-04-16