Mutagenetix > Incidental Mutations

Incidental Mutation 'IGL02337:Ephb3'

288914

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Ephb3

Ensembl Gene

ENSMUSG00000005958

Gene Name

Eph receptor B3

Synonyms

Tyro6, HEK2, MDK5, Sek4, Etk2, Cek10

Accession Numbers

Is this an essential gene?

Probably essential (E-score: 0.911) question?

Stock #

IGL02337

Quality Score

Status

Chromosome

Chromosomal Location

21204755-21223305 bp(+) (GRCm38)

Type of Mutation

splice site (3 bp from exon)

DNA Base Change (assembly)

A to G at 21221503 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000124375 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000006112] [ENSMUST00000161063]

AlphaFold

P54754

Predicted Effect

probably null
Transcript: ENSMUST00000006112

SMART Domains

Protein: ENSMUSP00000006112
Gene: ENSMUSG00000005958

Domain	Start	End	E-Value	Type
low complexity region	6	26	N/A	INTRINSIC
EPH_lbd	31	204	6.47e-126	SMART
Pfam:GCC2_GCC3	269	312	5.8e-9	PFAM
FN3	332	430	8.43e-9	SMART
FN3	448	527	2.72e-12	SMART
Pfam:EphA2_TM	555	625	1e-24	PFAM
TyrKc	628	887	1.35e-134	SMART
SAM	917	984	3.88e-24	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000159575

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000160053

Predicted Effect

probably null
Transcript: ENSMUST00000161063

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Ephrin receptors and their ligands, the ephrins, mediate numerous developmental processes, particularly in the nervous system. Based on their structures and sequence relationships, ephrins are divided into the ephrin-A (EFNA) class, which are anchored to the membrane by a glycosylphosphatidylinositol linkage, and the ephrin-B (EFNB) class, which are transmembrane proteins. The Eph family of receptors are divided into two groups based on the similarity of their extracellular domain sequences and their affinities for binding ephrin-A and ephrin-B ligands. Ephrin receptors make up the largest subgroup of the receptor tyrosine kinase (RTK) family. This gene encodes a receptor for ephrin-B family members. [provided by RefSeq, Mar 2010]
PHENOTYPE: Homozygotes for a targeted null mutation exhibit defects in corpus callosum formation and impaired Paneth cell downward migration in the intestinal epithelium, resulting in scattered positioning along crypt and villus. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 32 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aaas	A	G	15: 102,339,227	V403A	probably benign	Het
Afm	A	G	5: 90,547,911	T426A	probably benign	Het
Atp8a2	T	C	14: 59,998,002	D697G	probably benign	Het
Barhl1	G	T	2: 28,911,419	S204R	probably damaging	Het
Ceacam11	T	A	7: 17,973,625	S111R	probably benign	Het
Cenpe	A	G	3: 135,220,276		probably benign	Het
Cnot11	G	A	1: 39,544,883		probably benign	Het
Ctc1	A	G	11: 69,026,131	T284A	probably damaging	Het
Fsip1	T	A	2: 118,251,714	K80*	probably null	Het
Gaa	G	T	11: 119,277,603	G220C	probably damaging	Het
Gna15	T	C	10: 81,514,410	S53G	probably damaging	Het
Hfm1	A	T	5: 106,904,267	M321K	possibly damaging	Het
Hgfac	C	A	5: 35,042,378	T68K	probably benign	Het
Hmgxb4	C	T	8: 74,999,631	R35W	probably damaging	Het
Itfg2	T	C	6: 128,413,570	D184G	probably benign	Het
Kirrel	G	A	3: 87,089,212	T360I	possibly damaging	Het
Lrp1	T	C	10: 127,576,887	Q1240R	possibly damaging	Het
Lrrk1	G	T	7: 66,279,416	T1156N	possibly damaging	Het
Olfm1	A	G	2: 28,229,685	Y429C	probably damaging	Het
Olfr1093	T	A	2: 86,786,174	M148K	probably damaging	Het
Olfr1283	T	G	2: 111,369,151	V173G	probably benign	Het
Pafah1b2	C	T	9: 45,972,989	V122I	probably benign	Het
Pdcd1	T	C	1: 94,040,857	T151A	probably benign	Het
Pkd1l1	T	C	11: 8,942,079	S697G	probably damaging	Het
Rgs12	T	A	5: 35,020,353	F96I	probably damaging	Het
Sptbn4	T	C	7: 27,428,247	D176G	probably benign	Het
Tarbp2	C	A	15: 102,521,993	Q148K	probably damaging	Het
Txk	T	C	5: 72,707,546	R329G	possibly damaging	Het
Unc79	T	A	12: 103,156,446		probably benign	Het
Vmn1r73	C	A	7: 11,756,713	P153T	possibly damaging	Het
Zeb2	G	A	2: 44,997,230	T605I	probably damaging	Het
Zfp654	A	G	16: 64,785,149	S897P	probably benign	Het

Other mutations in Ephb3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00476:Ephb3	APN	16	21220415	splice site	probably null
IGL00966:Ephb3	APN	16	21217294	missense	probably benign	0.00
IGL02166:Ephb3	APN	16	21220749	missense	probably damaging	1.00
IGL02245:Ephb3	APN	16	21221424	missense	probably benign	0.04
IGL02321:Ephb3	APN	16	21214389	missense	probably damaging	1.00
IGL02507:Ephb3	APN	16	21220639	splice site	probably benign
IGL02755:Ephb3	APN	16	21221698	missense	probably damaging	1.00
IGL02806:Ephb3	APN	16	21222281	missense	probably benign	0.02
PIT4362001:Ephb3	UTSW	16	21220857	missense	probably damaging	1.00
R0026:Ephb3	UTSW	16	21214917	missense	probably damaging	1.00
R0194:Ephb3	UTSW	16	21218109	missense	probably benign	0.01
R0196:Ephb3	UTSW	16	21218054	missense	probably damaging	1.00
R0230:Ephb3	UTSW	16	21220775	missense	probably damaging	1.00
R0828:Ephb3	UTSW	16	21219034	unclassified	probably benign
R1126:Ephb3	UTSW	16	21222476	missense	possibly damaging	0.87
R1460:Ephb3	UTSW	16	21218922	missense	probably benign
R1592:Ephb3	UTSW	16	21221700	missense	probably damaging	1.00
R1632:Ephb3	UTSW	16	21212937	missense	probably benign	0.00
R1694:Ephb3	UTSW	16	21221745	missense	probably damaging	1.00
R1719:Ephb3	UTSW	16	21220650	missense	probably damaging	1.00
R1777:Ephb3	UTSW	16	21217235	missense	probably damaging	0.99
R1928:Ephb3	UTSW	16	21222295	missense	possibly damaging	0.86
R1956:Ephb3	UTSW	16	21221382	missense	probably damaging	1.00
R2378:Ephb3	UTSW	16	21218243	missense	probably benign
R3408:Ephb3	UTSW	16	21219504	missense	probably damaging	0.99
R4027:Ephb3	UTSW	16	21221697	missense	probably damaging	1.00
R4429:Ephb3	UTSW	16	21214463	missense	probably damaging	1.00
R4655:Ephb3	UTSW	16	21222208	missense	probably damaging	0.98
R4826:Ephb3	UTSW	16	21214995	missense	possibly damaging	0.90
R4828:Ephb3	UTSW	16	21214995	missense	possibly damaging	0.90
R4960:Ephb3	UTSW	16	21220495	missense	probably benign	0.09
R5057:Ephb3	UTSW	16	21220447	missense	probably damaging	1.00
R5090:Ephb3	UTSW	16	21214487	missense	probably damaging	1.00
R5396:Ephb3	UTSW	16	21219105	missense	possibly damaging	0.91
R5540:Ephb3	UTSW	16	21220860	missense	probably damaging	1.00
R5628:Ephb3	UTSW	16	21218119	missense	probably damaging	1.00
R5666:Ephb3	UTSW	16	21222491	missense	probably benign	0.08
R5838:Ephb3	UTSW	16	21221687	missense	probably damaging	1.00
R5866:Ephb3	UTSW	16	21211379	intron	probably benign
R6017:Ephb3	UTSW	16	21222031	missense	probably damaging	1.00
R6020:Ephb3	UTSW	16	21222013	missense	probably damaging	0.99
R6510:Ephb3	UTSW	16	21218111	missense	probably damaging	0.98
R6539:Ephb3	UTSW	16	21221468	missense	probably benign
R6591:Ephb3	UTSW	16	21214473	missense	probably damaging	1.00
R6691:Ephb3	UTSW	16	21214473	missense	probably damaging	1.00
R7101:Ephb3	UTSW	16	21218518	missense	possibly damaging	0.86
R7111:Ephb3	UTSW	16	21218827	nonsense	probably null
R7236:Ephb3	UTSW	16	21214481	missense	probably damaging	1.00
R7307:Ephb3	UTSW	16	21222226	missense	probably benign	0.04
R7410:Ephb3	UTSW	16	21221408	missense	possibly damaging	0.75
R7413:Ephb3	UTSW	16	21214707	missense	probably damaging	1.00
R7452:Ephb3	UTSW	16	21217357	splice site	probably null
R7944:Ephb3	UTSW	16	21221684	missense	probably damaging	1.00
R7945:Ephb3	UTSW	16	21221684	missense	probably damaging	1.00
R9092:Ephb3	UTSW	16	21222464	missense	probably benign	0.01
Z1176:Ephb3	UTSW	16	21218036	missense	possibly damaging	0.53

Posted On

2015-04-16