Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02281:Kit'

289829

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Kit

Ensembl Gene

ENSMUSG00000005672

Gene Name

KIT proto-oncogene receptor tyrosine kinase

Synonyms

SCO5, Dominant white spotting, Tr-kit, belly-spot, CD117, Gsfsow3, Gsfsco5, SOW3, SCO1, Steel Factor Receptor, c-KIT, Gsfsco1

Accession Numbers

Essential gene?

Probably essential (E-score: 0.939) question?

Stock #

IGL02281

Quality Score

Status

Chromosome

Chromosomal Location

75574916-75656722 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 75654534 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Lysine at position 973 (E973K)

Ref Sequence

ENSEMBL: ENSMUSP00000116465 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000005815] [ENSMUST00000144270]

AlphaFold

P05532

Predicted Effect

probably benign
Transcript: ENSMUST00000005815
AA Change: E977K

PolyPhen 2 Score 0.390 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000005815
Gene: ENSMUSG00000005672
AA Change: E977K

Domain	Start	End	E-Value	Type
low complexity region	10	18	N/A	INTRINSIC
low complexity region	25	38	N/A	INTRINSIC
IG	43	113	3.02e0	SMART
IG_like	122	206	1.09e2	SMART
IGc2	225	300	3.79e-4	SMART
IG	323	413	1.21e-2	SMART
IG_like	429	501	1.88e0	SMART
transmembrane domain	524	546	N/A	INTRINSIC
TyrKc	592	926	2.5e-138	SMART
low complexity region	945	963	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000144270
AA Change: E973K

PolyPhen 2 Score 0.663 (Sensitivity: 0.86; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000116465
Gene: ENSMUSG00000005672
AA Change: E973K

Domain	Start	End	E-Value	Type
low complexity region	1	10	N/A	INTRINSIC
low complexity region	22	30	N/A	INTRINSIC
low complexity region	37	50	N/A	INTRINSIC
IG	55	125	3.02e0	SMART
IG_like	134	218	1.09e2	SMART
IGc2	237	312	3.79e-4	SMART
IG	335	425	1.21e-2	SMART
IG_like	441	513	1.88e0	SMART
transmembrane domain	532	554	N/A	INTRINSIC
TyrKc	600	934	2.5e-138	SMART
low complexity region	953	971	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148993

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000201240

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000202167

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: The c-Kit proto-oncogene is the cellular homolog of the transforming gene of a feline retrovirus (v-Kit). The c-kit protein includes characteristics of a protein kinase transmembrane receptor. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mutations at this locus affect migration of embryonic stem cell populations, resulting in mild to severe impairments in hematopoiesis, and pigmentation. Some alleles are homozygous lethal, sterile, or result in the formation of gastrointestinal tumors. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 37 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Agrp	T	C	8: 105,567,154 (GRCm38)	E60G	probably benign	Het
Aldh3a1	T	G	11: 61,217,123 (GRCm38)		probably null	Het
Bach2	T	C	4: 32,562,513 (GRCm38)	C327R	possibly damaging	Het
Bcam	C	T	7: 19,758,691 (GRCm38)	G523D	probably damaging	Het
Bmpr2	T	A	1: 59,868,344 (GRCm38)	D865E	probably damaging	Het
Calm1	A	T	12: 100,205,624 (GRCm38)	I112F	probably damaging	Het
Ceacam3	T	C	7: 17,161,731 (GRCm38)	V542A	probably benign	Het
Clec5a	A	T	6: 40,584,402 (GRCm38)	D36E	probably benign	Het
Clspn	T	A	4: 126,565,770 (GRCm38)	C321S	possibly damaging	Het
Cmtr1	T	A	17: 29,691,281 (GRCm38)	D453E	probably benign	Het
Cntnap1	T	A	11: 101,182,254 (GRCm38)	D561E	possibly damaging	Het
Cul5	A	G	9: 53,635,049 (GRCm38)	V137A	possibly damaging	Het
Cyp2b9	A	G	7: 26,201,104 (GRCm38)	Y389C	probably damaging	Het
Ddi2	A	G	4: 141,692,419 (GRCm38)	V340A	probably benign	Het
Etv4	T	C	11: 101,773,719 (GRCm38)	Y235C	probably damaging	Het
Gm3099	G	A	14: 4,001,257 (GRCm38)		probably benign	Het
Gpsm1	T	A	2: 26,339,626 (GRCm38)		probably benign	Het
Idh2	A	G	7: 80,095,802 (GRCm38)		probably null	Het
Lilra5	A	G	7: 4,238,783 (GRCm38)	I194V	probably benign	Het
Lrp6	A	C	6: 134,457,734 (GRCm38)	N1335K	probably benign	Het
Map9	G	A	3: 82,391,146 (GRCm38)	E613K	possibly damaging	Het
Mroh2b	G	A	15: 4,952,263 (GRCm38)	A1519T	probably benign	Het
Nefm	A	G	14: 68,124,464 (GRCm38)	V117A	probably damaging	Het
Nr2c2	T	A	6: 92,154,514 (GRCm38)	S186T	probably benign	Het
Pde2a	G	A	7: 101,481,392 (GRCm38)	A80T	probably benign	Het
Plcd1	A	T	9: 119,074,773 (GRCm38)	C334S	probably benign	Het
Pomt1	T	C	2: 32,248,646 (GRCm38)	S425P	possibly damaging	Het
Pspc1	G	T	14: 56,723,178 (GRCm38)	P497T	probably benign	Het
Rnf123	G	A	9: 108,071,452 (GRCm38)	P58L	probably benign	Het
Rph3a	T	C	5: 120,948,833 (GRCm38)	T435A	probably damaging	Het
Rsbn1	T	C	3: 103,962,461 (GRCm38)	L746P	probably damaging	Het
Sfrp2	A	G	3: 83,773,139 (GRCm38)	E202G	possibly damaging	Het
Slc25a38	T	C	9: 120,117,532 (GRCm38)	S111P	probably damaging	Het
Tfcp2l1	T	C	1: 118,669,380 (GRCm38)		probably benign	Het
Tonsl	A	T	15: 76,634,074 (GRCm38)	L566H	probably damaging	Het
Tsc1	C	A	2: 28,663,595 (GRCm38)	D153E	probably damaging	Het
Vmn2r37	A	T	7: 9,217,882 (GRCm38)	H327Q	possibly damaging	Het

Other mutations in Kit

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00466:Kit	APN	5	75,610,819 (GRCm38)	missense	probably benign	0.00
IGL00834:Kit	APN	5	75,645,959 (GRCm38)	missense	probably damaging	1.00
IGL00846:Kit	APN	5	75,640,811 (GRCm38)	missense	probably damaging	0.98
IGL01149:Kit	APN	5	75,610,876 (GRCm38)	missense	probably damaging	0.97
IGL01341:Kit	APN	5	75,607,074 (GRCm38)	missense	probably damaging	1.00
IGL02004:Kit	APN	5	75,621,014 (GRCm38)	missense	probably benign
IGL02424:Kit	APN	5	75,639,106 (GRCm38)	missense	probably benign
IGL02697:Kit	APN	5	75,607,259 (GRCm38)	missense	probably benign
IGL02929:Kit	APN	5	75,640,769 (GRCm38)	missense	probably damaging	1.00
IGL03053:Kit	APN	5	75,610,914 (GRCm38)	missense	probably benign
IGL03127:Kit	APN	5	75,641,188 (GRCm38)	missense	probably benign	0.44
IGL03174:Kit	APN	5	75,607,113 (GRCm38)	missense	probably benign
IGL03381:Kit	APN	5	75,607,128 (GRCm38)	missense	probably benign	0.04
casper	UTSW	5	75,645,875 (GRCm38)	missense	probably damaging	1.00
Mooyah2	UTSW	5	75,652,808 (GRCm38)	missense	probably damaging	1.00
pretty2	UTSW	5	75,649,550 (GRCm38)	missense	probably damaging	1.00
slimmer	UTSW	5	75,640,757 (GRCm38)	missense	possibly damaging	0.94
IGL02837:Kit	UTSW	5	75,639,008 (GRCm38)	missense	probably benign	0.00
R0022:Kit	UTSW	5	75,622,997 (GRCm38)	missense	probably benign	0.00
R0022:Kit	UTSW	5	75,622,997 (GRCm38)	missense	probably benign	0.00
R0092:Kit	UTSW	5	75,647,754 (GRCm38)	missense	possibly damaging	0.93
R0254:Kit	UTSW	5	75,620,921 (GRCm38)	missense	probably benign
R0329:Kit	UTSW	5	75,652,829 (GRCm38)	missense	probably damaging	1.00
R0609:Kit	UTSW	5	75,610,879 (GRCm38)	missense	probably benign	0.35
R1068:Kit	UTSW	5	75,609,518 (GRCm38)	missense	probably benign
R1115:Kit	UTSW	5	75,649,532 (GRCm38)	splice site	probably benign
R1480:Kit	UTSW	5	75,637,317 (GRCm38)	missense	probably benign	0.00
R1639:Kit	UTSW	5	75,652,807 (GRCm38)	missense	probably damaging	1.00
R1801:Kit	UTSW	5	75,648,393 (GRCm38)	missense	probably damaging	1.00
R1973:Kit	UTSW	5	75,615,442 (GRCm38)	missense	probably damaging	1.00
R2033:Kit	UTSW	5	75,637,317 (GRCm38)	missense	possibly damaging	0.88
R3125:Kit	UTSW	5	75,647,828 (GRCm38)	missense	probably null	0.00
R3125:Kit	UTSW	5	75,647,827 (GRCm38)	missense	probably benign	0.07
R3437:Kit	UTSW	5	75,645,905 (GRCm38)	missense	probably damaging	1.00
R3791:Kit	UTSW	5	75,639,150 (GRCm38)	missense	probably damaging	1.00
R3939:Kit	UTSW	5	75,609,318 (GRCm38)	missense	probably benign	0.00
R3940:Kit	UTSW	5	75,609,318 (GRCm38)	missense	probably benign	0.00
R3941:Kit	UTSW	5	75,609,318 (GRCm38)	missense	probably benign	0.00
R3942:Kit	UTSW	5	75,609,318 (GRCm38)	missense	probably benign	0.00
R4092:Kit	UTSW	5	75,610,810 (GRCm38)	missense	probably benign	0.28
R4376:Kit	UTSW	5	75,640,499 (GRCm38)	missense	probably benign	0.00
R4377:Kit	UTSW	5	75,640,499 (GRCm38)	missense	probably benign	0.00
R4668:Kit	UTSW	5	75,641,220 (GRCm38)	splice site	probably null
R5104:Kit	UTSW	5	75,615,478 (GRCm38)	missense	probably benign	0.00
R5152:Kit	UTSW	5	75,620,847 (GRCm38)	missense	probably benign	0.00
R5154:Kit	UTSW	5	75,640,540 (GRCm38)	missense	probably damaging	0.99
R5508:Kit	UTSW	5	75,649,548 (GRCm38)	missense	probably damaging	1.00
R5624:Kit	UTSW	5	75,609,394 (GRCm38)	missense	probably benign	0.40
R5731:Kit	UTSW	5	75,654,415 (GRCm38)	missense	possibly damaging	0.93
R6270:Kit	UTSW	5	75,609,509 (GRCm38)	missense	probably benign
R6565:Kit	UTSW	5	75,645,853 (GRCm38)	missense	probably damaging	1.00
R6694:Kit	UTSW	5	75,640,757 (GRCm38)	missense	possibly damaging	0.94
R6805:Kit	UTSW	5	75,652,808 (GRCm38)	missense	probably damaging	1.00
R6823:Kit	UTSW	5	75,652,649 (GRCm38)	missense	probably benign	0.01
R6848:Kit	UTSW	5	75,607,212 (GRCm38)	missense	probably benign
R7021:Kit	UTSW	5	75,620,967 (GRCm38)	missense	probably benign	0.00
R7080:Kit	UTSW	5	75,607,281 (GRCm38)	missense	probably damaging	0.99
R7117:Kit	UTSW	5	75,607,098 (GRCm38)	missense	probably benign	0.18
R7156:Kit	UTSW	5	75,615,374 (GRCm38)	missense	probably benign	0.14
R7379:Kit	UTSW	5	75,647,752 (GRCm38)	missense	probably damaging	1.00
R7427:Kit	UTSW	5	75,645,847 (GRCm38)	missense	possibly damaging	0.92
R7438:Kit	UTSW	5	75,639,000 (GRCm38)	missense	probably benign	0.01
R7531:Kit	UTSW	5	75,607,040 (GRCm38)	missense	probably damaging	0.99
R7711:Kit	UTSW	5	75,637,359 (GRCm38)	missense	probably damaging	0.97
R7810:Kit	UTSW	5	75,609,322 (GRCm38)	missense	probably benign	0.11
R7819:Kit	UTSW	5	75,645,932 (GRCm38)	missense	probably benign	0.41
R8021:Kit	UTSW	5	75,615,491 (GRCm38)	missense	possibly damaging	0.79
R8139:Kit	UTSW	5	75,652,805 (GRCm38)	missense	probably damaging	0.99
R8165:Kit	UTSW	5	75,620,880 (GRCm38)	missense	possibly damaging	0.94
R8249:Kit	UTSW	5	75,641,408 (GRCm38)	missense	probably damaging	0.97
R8288:Kit	UTSW	5	75,654,489 (GRCm38)	missense	probably damaging	1.00
R8290:Kit	UTSW	5	75,641,169 (GRCm38)	missense	probably benign
R8829:Kit	UTSW	5	75,639,131 (GRCm38)	missense	probably benign	0.41
R8832:Kit	UTSW	5	75,639,131 (GRCm38)	missense	probably benign	0.41
R8969:Kit	UTSW	5	75,639,062 (GRCm38)	missense
R9081:Kit	UTSW	5	75,640,558 (GRCm38)	missense	probably benign
R9146:Kit	UTSW	5	75,649,645 (GRCm38)	missense	probably damaging	1.00
R9232:Kit	UTSW	5	75,639,132 (GRCm38)	missense	probably benign	0.00
R9631:Kit	UTSW	5	75,607,029 (GRCm38)	missense	possibly damaging	0.95
U24488:Kit	UTSW	5	75,623,014 (GRCm38)	nonsense	probably null

Posted On

2015-04-16