Incidental Mutation 'IGL02295:Vmn1r172'
ID 290151
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Vmn1r172
Ensembl Gene ENSMUSG00000035523
Gene Name vomeronasal 1 receptor 172
Synonyms V3R9, V1rd9
Accession Numbers
Essential gene? Probably non essential (E-score: 0.063) question?
Stock # IGL02295
Quality Score
Status
Chromosome 7
Chromosomal Location 23357741-23360088 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 23359342 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Serine at position 76 (T76S)
Ref Sequence ENSEMBL: ENSMUSP00000133887 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000038694] [ENSMUST00000173101]
AlphaFold Q9EPS4
Predicted Effect probably benign
Transcript: ENSMUST00000038694
AA Change: T76S

PolyPhen 2 Score 0.297 (Sensitivity: 0.91; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000041653
Gene: ENSMUSG00000035523
AA Change: T76S

DomainStartEndE-ValueType
Pfam:TAS2R 8 301 7.1e-9 PFAM
Pfam:7tm_1 30 268 3.6e-9 PFAM
Pfam:V1R 43 301 7.2e-18 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000173101
AA Change: T76S

PolyPhen 2 Score 0.297 (Sensitivity: 0.91; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000133887
Gene: ENSMUSG00000035523
AA Change: T76S

DomainStartEndE-ValueType
Pfam:TAS2R 8 301 7.2e-9 PFAM
Pfam:V1R 43 301 7.2e-18 PFAM
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 12 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4933411K16Rik A G 19: 42,041,394 (GRCm39) N175S possibly damaging Het
Adam20 A T 8: 41,249,873 (GRCm39) N661I probably damaging Het
Or2n1 G T 17: 38,486,577 (GRCm39) V201L probably benign Het
Or51f1 T A 7: 102,506,031 (GRCm39) M153L probably benign Het
Or6c1b T A 10: 129,272,903 (GRCm39) V74D possibly damaging Het
Pdlim2 T A 14: 70,403,532 (GRCm39) probably benign Het
Phtf2 T C 5: 21,012,428 (GRCm39) D49G probably damaging Het
Ppp1ca T A 19: 4,244,481 (GRCm39) L180* probably null Het
Prdm10 T C 9: 31,273,664 (GRCm39) V1027A probably benign Het
Slc38a10 T C 11: 120,007,684 (GRCm39) probably benign Het
Tlr1 A T 5: 65,083,290 (GRCm39) L429* probably null Het
Vps13a A G 19: 16,692,406 (GRCm39) probably benign Het
Other mutations in Vmn1r172
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02407:Vmn1r172 APN 7 23,359,228 (GRCm39) missense probably damaging 1.00
IGL02540:Vmn1r172 APN 7 23,359,350 (GRCm39) missense probably benign 0.25
IGL03090:Vmn1r172 APN 7 23,359,463 (GRCm39) missense probably damaging 0.98
R0396:Vmn1r172 UTSW 7 23,359,957 (GRCm39) missense probably benign 0.06
R1087:Vmn1r172 UTSW 7 23,359,673 (GRCm39) missense possibly damaging 0.92
R1502:Vmn1r172 UTSW 7 23,359,681 (GRCm39) nonsense probably null
R1701:Vmn1r172 UTSW 7 23,359,529 (GRCm39) missense probably damaging 1.00
R1882:Vmn1r172 UTSW 7 23,359,651 (GRCm39) missense probably damaging 1.00
R2272:Vmn1r172 UTSW 7 23,359,616 (GRCm39) missense probably damaging 0.98
R4646:Vmn1r172 UTSW 7 23,359,919 (GRCm39) missense probably benign 0.03
R4653:Vmn1r172 UTSW 7 23,359,997 (GRCm39) missense probably damaging 0.96
R4709:Vmn1r172 UTSW 7 23,359,606 (GRCm39) missense probably benign 0.25
R4937:Vmn1r172 UTSW 7 23,359,312 (GRCm39) missense possibly damaging 0.92
R4945:Vmn1r172 UTSW 7 23,359,745 (GRCm39) missense possibly damaging 0.79
R5840:Vmn1r172 UTSW 7 23,359,600 (GRCm39) missense probably benign 0.03
R6154:Vmn1r172 UTSW 7 23,359,583 (GRCm39) missense probably damaging 0.96
R6317:Vmn1r172 UTSW 7 23,359,742 (GRCm39) missense probably damaging 1.00
R7206:Vmn1r172 UTSW 7 23,359,582 (GRCm39) missense possibly damaging 0.69
R7290:Vmn1r172 UTSW 7 23,360,048 (GRCm39) missense unknown
R7362:Vmn1r172 UTSW 7 23,359,841 (GRCm39) missense probably damaging 1.00
R7369:Vmn1r172 UTSW 7 23,360,030 (GRCm39) missense unknown
R7528:Vmn1r172 UTSW 7 23,359,189 (GRCm39) missense probably damaging 1.00
R7946:Vmn1r172 UTSW 7 23,358,857 (GRCm39) splice site probably null
R8193:Vmn1r172 UTSW 7 23,359,752 (GRCm39) nonsense probably null
R8540:Vmn1r172 UTSW 7 23,359,498 (GRCm39) missense possibly damaging 0.79
R8863:Vmn1r172 UTSW 7 23,359,210 (GRCm39) missense probably benign 0.08
R8974:Vmn1r172 UTSW 7 23,359,840 (GRCm39) missense probably benign 0.06
R9006:Vmn1r172 UTSW 7 23,359,402 (GRCm39) missense probably benign 0.04
R9021:Vmn1r172 UTSW 7 23,359,749 (GRCm39) missense probably damaging 1.00
R9246:Vmn1r172 UTSW 7 23,359,593 (GRCm39) missense possibly damaging 0.77
R9604:Vmn1r172 UTSW 7 23,359,193 (GRCm39) missense possibly damaging 0.68
U24488:Vmn1r172 UTSW 7 23,359,171 (GRCm39) missense probably benign 0.02
Posted On 2015-04-16