Incidental Mutation 'IGL02370:Nfrkb'
| ID |
290875 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Nfrkb
|
| Ensembl Gene |
ENSMUSG00000042185 |
| Gene Name |
nuclear factor related to kappa B binding protein |
| Synonyms |
A530090G11Rik |
| Accession Numbers |
|
| Essential gene? |
Possibly essential
(E-score: 0.729)
|
| Stock # |
IGL02370
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
9 |
| Chromosomal Location |
31297488-31332629 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
G to A
at 31300308 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Glycine to Aspartic acid
at position 33
(G33D)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000083341
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000086167]
[ENSMUST00000131540]
[ENSMUST00000132329]
[ENSMUST00000152593]
[ENSMUST00000215211]
|
| AlphaFold |
Q6PIJ4 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000086167
AA Change: G33D
PolyPhen 2
Score 0.079 (Sensitivity: 0.93; Specificity: 0.85)
|
| SMART Domains |
Protein: ENSMUSP00000083341
Gene: ENSMUSG00000042185
AA Change: G33D
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
209 |
234 |
N/A |
INTRINSIC |
|
coiled coil region
|
304 |
335 |
N/A |
INTRINSIC |
|
Pfam:NFRKB_winged
|
379 |
478 |
4.5e-35 |
PFAM |
|
low complexity region
|
663 |
690 |
N/A |
INTRINSIC |
|
low complexity region
|
700 |
740 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
879 |
953 |
2.02e-5 |
PROSPERO |
|
low complexity region
|
1016 |
1034 |
N/A |
INTRINSIC |
|
low complexity region
|
1111 |
1127 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
1128 |
1201 |
2.02e-5 |
PROSPERO |
|
low complexity region
|
1239 |
1255 |
N/A |
INTRINSIC |
|
low complexity region
|
1269 |
1290 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000131540
AA Change: G33D
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000132329
AA Change: G33D
PolyPhen 2
Score 0.067 (Sensitivity: 0.94; Specificity: 0.84)
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000134528
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000152593
AA Change: G33D
PolyPhen 2
Score 0.067 (Sensitivity: 0.94; Specificity: 0.84)
|
| SMART Domains |
Protein: ENSMUSP00000119025
Gene: ENSMUSG00000042185
AA Change: G33D
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
209 |
234 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000215211
AA Change: G33D
PolyPhen 2
Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 46 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 4732471J01Rik |
T |
C |
7: 25,084,313 (GRCm39) |
|
probably benign |
Het |
| Abra |
T |
C |
15: 41,732,640 (GRCm39) |
D142G |
probably damaging |
Het |
| Aldh9a1 |
A |
G |
1: 167,184,101 (GRCm39) |
N199D |
probably damaging |
Het |
| Baz2b |
A |
T |
2: 59,753,933 (GRCm39) |
I1130N |
possibly damaging |
Het |
| Cacna1s |
A |
G |
1: 136,013,085 (GRCm39) |
I312V |
probably damaging |
Het |
| Chrd |
A |
G |
16: 20,554,541 (GRCm39) |
M367V |
possibly damaging |
Het |
| Clec12a |
C |
T |
6: 129,331,539 (GRCm39) |
A160V |
possibly damaging |
Het |
| Cnnm1 |
T |
C |
19: 43,460,389 (GRCm39) |
|
probably null |
Het |
| Cntnap3 |
A |
T |
13: 64,899,565 (GRCm39) |
M976K |
probably benign |
Het |
| Cyp27b1 |
T |
C |
10: 126,886,543 (GRCm39) |
|
probably benign |
Het |
| Ddx54 |
T |
A |
5: 120,757,852 (GRCm39) |
L226Q |
probably damaging |
Het |
| Dnah7a |
A |
G |
1: 53,674,556 (GRCm39) |
V407A |
probably benign |
Het |
| Elp4 |
A |
G |
2: 105,624,937 (GRCm39) |
S201P |
probably damaging |
Het |
| Exoc3 |
A |
T |
13: 74,340,880 (GRCm39) |
V308D |
probably benign |
Het |
| Exosc3 |
A |
G |
4: 45,319,671 (GRCm39) |
I117T |
probably damaging |
Het |
| Gbx2 |
A |
T |
1: 89,856,871 (GRCm39) |
|
probably benign |
Het |
| Hnf1b |
A |
C |
11: 83,773,559 (GRCm39) |
T253P |
possibly damaging |
Het |
| Inhca |
A |
G |
9: 103,140,273 (GRCm39) |
V482A |
probably benign |
Het |
| Itih5 |
A |
T |
2: 10,191,786 (GRCm39) |
Y107F |
probably benign |
Het |
| Kcnb2 |
A |
G |
1: 15,781,159 (GRCm39) |
N677S |
probably benign |
Het |
| Knstrn |
T |
A |
2: 118,654,269 (GRCm39) |
|
probably null |
Het |
| Lin9 |
G |
T |
1: 180,515,583 (GRCm39) |
C451F |
probably damaging |
Het |
| Mast1 |
A |
C |
8: 85,638,883 (GRCm39) |
V1482G |
probably benign |
Het |
| Mroh4 |
A |
G |
15: 74,497,390 (GRCm39) |
F144L |
probably benign |
Het |
| Myrf |
T |
C |
19: 10,191,504 (GRCm39) |
N945D |
probably benign |
Het |
| Or5m9b |
C |
A |
2: 85,905,132 (GRCm39) |
T16K |
probably damaging |
Het |
| P2ry13 |
T |
C |
3: 59,116,886 (GRCm39) |
I297M |
probably damaging |
Het |
| Pcdhb21 |
T |
A |
18: 37,647,645 (GRCm39) |
|
probably null |
Het |
| Pitpnm3 |
A |
G |
11: 71,942,684 (GRCm39) |
Y868H |
probably benign |
Het |
| Pou2f3 |
G |
A |
9: 43,048,643 (GRCm39) |
R266W |
probably damaging |
Het |
| Rcn3 |
T |
C |
7: 44,732,757 (GRCm39) |
S304G |
probably benign |
Het |
| Rinl |
A |
G |
7: 28,494,397 (GRCm39) |
|
probably null |
Het |
| Sema5a |
T |
C |
15: 32,682,445 (GRCm39) |
|
probably benign |
Het |
| Sipa1l2 |
A |
G |
8: 126,207,008 (GRCm39) |
L565P |
probably damaging |
Het |
| Slc5a9 |
A |
G |
4: 111,734,826 (GRCm39) |
I656T |
probably benign |
Het |
| Sptan1 |
A |
G |
2: 29,920,752 (GRCm39) |
K2404R |
probably damaging |
Het |
| Tars3 |
C |
A |
7: 65,310,913 (GRCm39) |
P314Q |
probably benign |
Het |
| Tbc1d14 |
C |
T |
5: 36,652,562 (GRCm39) |
V627I |
possibly damaging |
Het |
| Tdpoz8 |
A |
G |
3: 92,981,354 (GRCm39) |
D124G |
possibly damaging |
Het |
| Tfcp2 |
A |
T |
15: 100,410,185 (GRCm39) |
V394D |
probably damaging |
Het |
| Trerf1 |
C |
T |
17: 47,625,387 (GRCm39) |
|
noncoding transcript |
Het |
| Ucp2 |
A |
G |
7: 100,147,591 (GRCm39) |
N190S |
probably damaging |
Het |
| Vmn2r124 |
A |
G |
17: 18,284,453 (GRCm39) |
Q498R |
probably benign |
Het |
| Yeats2 |
T |
A |
16: 19,969,221 (GRCm39) |
I4N |
probably damaging |
Het |
| Zfp574 |
T |
G |
7: 24,779,014 (GRCm39) |
I12S |
possibly damaging |
Het |
| Zscan29 |
T |
A |
2: 120,994,314 (GRCm39) |
E522V |
probably benign |
Het |
|
| Other mutations in Nfrkb |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00688:Nfrkb
|
APN |
9 |
31,300,345 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL01343:Nfrkb
|
APN |
9 |
31,300,250 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL01363:Nfrkb
|
APN |
9 |
31,325,667 (GRCm39) |
missense |
possibly damaging |
0.53 |
|
IGL01647:Nfrkb
|
APN |
9 |
31,307,801 (GRCm39) |
splice site |
probably benign |
|
|
IGL01655:Nfrkb
|
APN |
9 |
31,314,755 (GRCm39) |
missense |
probably benign |
0.09 |
|
IGL01735:Nfrkb
|
APN |
9 |
31,321,435 (GRCm39) |
missense |
possibly damaging |
0.73 |
|
IGL01926:Nfrkb
|
APN |
9 |
31,325,475 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL01929:Nfrkb
|
APN |
9 |
31,331,169 (GRCm39) |
missense |
possibly damaging |
0.73 |
|
IGL02095:Nfrkb
|
APN |
9 |
31,322,527 (GRCm39) |
missense |
probably damaging |
0.97 |
|
IGL02525:Nfrkb
|
APN |
9 |
31,325,812 (GRCm39) |
missense |
possibly damaging |
0.73 |
|
R0325:Nfrkb
|
UTSW |
9 |
31,325,476 (GRCm39) |
missense |
probably benign |
0.06 |
|
R0390:Nfrkb
|
UTSW |
9 |
31,300,193 (GRCm39) |
start gained |
probably benign |
|
|
R0558:Nfrkb
|
UTSW |
9 |
31,321,564 (GRCm39) |
missense |
possibly damaging |
0.73 |
|
R0670:Nfrkb
|
UTSW |
9 |
31,331,469 (GRCm39) |
missense |
probably benign |
0.33 |
|
R1329:Nfrkb
|
UTSW |
9 |
31,325,943 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R1729:Nfrkb
|
UTSW |
9 |
31,325,932 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1730:Nfrkb
|
UTSW |
9 |
31,325,932 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1894:Nfrkb
|
UTSW |
9 |
31,326,064 (GRCm39) |
missense |
probably benign |
0.02 |
|
R1975:Nfrkb
|
UTSW |
9 |
31,325,980 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R2022:Nfrkb
|
UTSW |
9 |
31,322,546 (GRCm39) |
missense |
probably benign |
0.04 |
|
R2175:Nfrkb
|
UTSW |
9 |
31,300,310 (GRCm39) |
missense |
possibly damaging |
0.73 |
|
R3793:Nfrkb
|
UTSW |
9 |
31,321,228 (GRCm39) |
splice site |
probably benign |
|
|
R4020:Nfrkb
|
UTSW |
9 |
31,325,407 (GRCm39) |
missense |
possibly damaging |
0.96 |
|
R4425:Nfrkb
|
UTSW |
9 |
31,311,258 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4727:Nfrkb
|
UTSW |
9 |
31,314,919 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4730:Nfrkb
|
UTSW |
9 |
31,321,547 (GRCm39) |
missense |
probably benign |
0.33 |
|
R4775:Nfrkb
|
UTSW |
9 |
31,330,345 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R5032:Nfrkb
|
UTSW |
9 |
31,300,351 (GRCm39) |
splice site |
probably null |
|
|
R5532:Nfrkb
|
UTSW |
9 |
31,309,075 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5635:Nfrkb
|
UTSW |
9 |
31,310,594 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R5712:Nfrkb
|
UTSW |
9 |
31,325,932 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5720:Nfrkb
|
UTSW |
9 |
31,306,038 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6448:Nfrkb
|
UTSW |
9 |
31,306,085 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6543:Nfrkb
|
UTSW |
9 |
31,312,281 (GRCm39) |
nonsense |
probably null |
|
|
R6612:Nfrkb
|
UTSW |
9 |
31,308,302 (GRCm39) |
nonsense |
probably null |
|
|
R7087:Nfrkb
|
UTSW |
9 |
31,331,228 (GRCm39) |
nonsense |
probably null |
|
|
R7123:Nfrkb
|
UTSW |
9 |
31,325,311 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R7483:Nfrkb
|
UTSW |
9 |
31,325,328 (GRCm39) |
nonsense |
probably null |
|
|
R7875:Nfrkb
|
UTSW |
9 |
31,321,450 (GRCm39) |
missense |
possibly damaging |
0.53 |
|
R8336:Nfrkb
|
UTSW |
9 |
31,314,815 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R8370:Nfrkb
|
UTSW |
9 |
31,316,875 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8427:Nfrkb
|
UTSW |
9 |
31,330,323 (GRCm39) |
missense |
probably benign |
0.01 |
|
R8518:Nfrkb
|
UTSW |
9 |
31,311,261 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9607:Nfrkb
|
UTSW |
9 |
31,326,066 (GRCm39) |
missense |
possibly damaging |
0.73 |
|
R9627:Nfrkb
|
UTSW |
9 |
31,321,189 (GRCm39) |
missense |
possibly damaging |
0.96 |
|
R9679:Nfrkb
|
UTSW |
9 |
31,321,385 (GRCm39) |
missense |
probably benign |
|
|
T0975:Nfrkb
|
UTSW |
9 |
31,308,379 (GRCm39) |
missense |
probably benign |
0.04 |
|
Z1088:Nfrkb
|
UTSW |
9 |
31,322,629 (GRCm39) |
missense |
possibly damaging |
0.73 |
|
| Posted On |
2015-04-16 |
Incidental Mutation