Incidental Mutation 'IGL02418:Shoc1'
ID 292558
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Shoc1
Ensembl Gene ENSMUSG00000038598
Gene Name shortage in chiasmata 1
Synonyms Mzip2, Gm426, AI481877, LOC242489
Accession Numbers
Essential gene? Probably non essential (E-score: 0.090) question?
Stock # IGL02418
Quality Score
Status
Chromosome 4
Chromosomal Location 59043753-59138983 bp(-) (GRCm39)
Type of Mutation splice site
DNA Base Change (assembly) A to T at 59049075 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000103171 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000107547]
AlphaFold A2ALV5
Predicted Effect probably benign
Transcript: ENSMUST00000107547
SMART Domains Protein: ENSMUSP00000103171
Gene: ENSMUSG00000038598

DomainStartEndE-ValueType
low complexity region 246 264 N/A INTRINSIC
low complexity region 543 560 N/A INTRINSIC
low complexity region 908 917 N/A INTRINSIC
low complexity region 1189 1201 N/A INTRINSIC
Coding Region Coverage
Validation Efficiency
Allele List at MGI

All alleles(6) : Targeted, other(1) Gene trapped(5)

Other mutations in this stock
Total: 45 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abi3bp T A 16: 56,424,479 (GRCm39) probably benign Het
Acsbg2 A G 17: 57,156,730 (GRCm39) V436A probably benign Het
Afap1l1 T C 18: 61,885,648 (GRCm39) D156G probably damaging Het
Arhgap21 G A 2: 20,885,711 (GRCm39) R489C probably damaging Het
Arhgap26 G A 18: 39,490,620 (GRCm39) probably benign Het
Bbs5 T G 2: 69,485,849 (GRCm39) *89G probably null Het
Ceacam5 A T 7: 17,493,359 (GRCm39) Y794F possibly damaging Het
Ces3b T C 8: 105,812,279 (GRCm39) V176A probably damaging Het
Cfi A G 3: 129,642,461 (GRCm39) H105R probably benign Het
Chat C T 14: 32,168,906 (GRCm39) V210I possibly damaging Het
Chd1l A G 3: 97,488,415 (GRCm39) S534P probably benign Het
Cyb5rl T C 4: 106,928,182 (GRCm39) L106P probably damaging Het
Cyp21a1 A G 17: 35,023,162 (GRCm39) probably benign Het
Dnah12 T C 14: 26,495,679 (GRCm39) C1436R probably damaging Het
Flg2 T A 3: 93,108,361 (GRCm39) F130I probably benign Het
Fryl T A 5: 73,267,519 (GRCm39) probably benign Het
Galnt10 T C 11: 57,671,994 (GRCm39) V428A probably benign Het
Ganab A G 19: 8,888,433 (GRCm39) D496G probably null Het
Gapvd1 T C 2: 34,620,530 (GRCm39) T44A probably benign Het
Gm17093 T A 14: 44,758,185 (GRCm39) M122K unknown Het
Gm5356 A T 8: 89,914,064 (GRCm39) noncoding transcript Het
Gmppa G T 1: 75,415,664 (GRCm39) G126C probably damaging Het
Il23r T C 6: 67,467,656 (GRCm39) H37R possibly damaging Het
Itga11 A G 9: 62,651,914 (GRCm39) I349V probably benign Het
Lrrc42 A T 4: 107,100,533 (GRCm39) Y159* probably null Het
Naa16 C A 14: 79,620,806 (GRCm39) R57L probably damaging Het
Ntmt2 A T 1: 163,530,725 (GRCm39) V238E probably damaging Het
Or8g4 A G 9: 39,661,787 (GRCm39) Y35C probably damaging Het
Oxtr A T 6: 112,454,200 (GRCm39) H21Q probably damaging Het
Paqr7 A G 4: 134,234,284 (GRCm39) Y47C probably damaging Het
Paxbp1 A C 16: 90,831,000 (GRCm39) C459G probably damaging Het
Pnp2 C T 14: 51,201,293 (GRCm39) R222C possibly damaging Het
Rtl1 T C 12: 109,556,883 (GRCm39) D1652G probably damaging Het
Saxo5 T A 8: 3,526,080 (GRCm39) F78I probably damaging Het
Spata4 C A 8: 55,062,978 (GRCm39) N294K probably benign Het
Tcp11l2 T A 10: 84,449,470 (GRCm39) Y478* probably null Het
Tcte1 T A 17: 45,852,128 (GRCm39) S454T probably benign Het
Thsd4 C T 9: 60,335,598 (GRCm39) V105I probably damaging Het
Tmem117 T A 15: 94,829,765 (GRCm39) I200N probably benign Het
Tpgs1 G A 10: 79,505,289 (GRCm39) V16M probably benign Het
Ttn G T 2: 76,797,447 (GRCm39) T539K probably benign Het
Usp24 A G 4: 106,293,557 (GRCm39) S2542G probably benign Het
Vmn2r44 A T 7: 8,380,864 (GRCm39) L343H probably damaging Het
Zmat2 T A 18: 36,927,392 (GRCm39) Y21N probably damaging Het
Zyx C T 6: 42,334,327 (GRCm39) A517V probably damaging Het
Other mutations in Shoc1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00272:Shoc1 APN 4 59,086,961 (GRCm39) missense probably benign
IGL00574:Shoc1 APN 4 59,094,201 (GRCm39) missense possibly damaging 0.66
IGL01333:Shoc1 APN 4 59,047,870 (GRCm39) missense possibly damaging 0.66
IGL02282:Shoc1 APN 4 59,111,114 (GRCm39) missense unknown
IGL02621:Shoc1 APN 4 59,062,668 (GRCm39) missense probably damaging 0.97
IGL03028:Shoc1 APN 4 59,094,274 (GRCm39) missense possibly damaging 0.66
IGL03112:Shoc1 APN 4 59,049,355 (GRCm39) missense probably benign 0.27
IGL03137:Shoc1 APN 4 59,094,162 (GRCm39) missense probably benign 0.27
IGL03220:Shoc1 APN 4 59,082,378 (GRCm39) nonsense probably null
IGL03386:Shoc1 APN 4 59,069,315 (GRCm39) missense possibly damaging 0.66
1mM(1):Shoc1 UTSW 4 59,048,024 (GRCm39) nonsense probably null
R0071:Shoc1 UTSW 4 59,059,643 (GRCm39) missense possibly damaging 0.92
R0071:Shoc1 UTSW 4 59,059,643 (GRCm39) missense possibly damaging 0.92
R0194:Shoc1 UTSW 4 59,066,534 (GRCm39) splice site probably benign
R0366:Shoc1 UTSW 4 59,099,410 (GRCm39) missense probably benign 0.09
R0680:Shoc1 UTSW 4 59,043,967 (GRCm39) missense probably benign 0.00
R1419:Shoc1 UTSW 4 59,064,457 (GRCm39) missense possibly damaging 0.66
R1599:Shoc1 UTSW 4 59,072,349 (GRCm39) missense possibly damaging 0.82
R1699:Shoc1 UTSW 4 59,113,926 (GRCm39) missense unknown
R1799:Shoc1 UTSW 4 59,099,383 (GRCm39) missense possibly damaging 0.92
R1832:Shoc1 UTSW 4 59,066,441 (GRCm39) missense probably benign 0.05
R1870:Shoc1 UTSW 4 59,054,142 (GRCm39) splice site probably benign
R2076:Shoc1 UTSW 4 59,082,410 (GRCm39) missense possibly damaging 0.46
R2170:Shoc1 UTSW 4 59,069,215 (GRCm39) missense possibly damaging 0.92
R2870:Shoc1 UTSW 4 59,093,850 (GRCm39) missense probably damaging 0.97
R2870:Shoc1 UTSW 4 59,093,850 (GRCm39) missense probably damaging 0.97
R2871:Shoc1 UTSW 4 59,093,850 (GRCm39) missense probably damaging 0.97
R2871:Shoc1 UTSW 4 59,093,850 (GRCm39) missense probably damaging 0.97
R2872:Shoc1 UTSW 4 59,093,850 (GRCm39) missense probably damaging 0.97
R2872:Shoc1 UTSW 4 59,093,850 (GRCm39) missense probably damaging 0.97
R2873:Shoc1 UTSW 4 59,093,850 (GRCm39) missense probably damaging 0.97
R3026:Shoc1 UTSW 4 59,062,656 (GRCm39) missense possibly damaging 0.83
R3079:Shoc1 UTSW 4 59,047,848 (GRCm39) missense possibly damaging 0.82
R3853:Shoc1 UTSW 4 59,047,390 (GRCm39) missense possibly damaging 0.66
R3914:Shoc1 UTSW 4 59,094,201 (GRCm39) missense possibly damaging 0.66
R4006:Shoc1 UTSW 4 59,076,500 (GRCm39) missense possibly damaging 0.53
R4364:Shoc1 UTSW 4 59,082,294 (GRCm39) missense possibly damaging 0.92
R4387:Shoc1 UTSW 4 59,060,915 (GRCm39) missense possibly damaging 0.66
R4454:Shoc1 UTSW 4 59,092,383 (GRCm39) missense possibly damaging 0.90
R4811:Shoc1 UTSW 4 59,082,404 (GRCm39) missense probably benign 0.19
R4853:Shoc1 UTSW 4 59,072,345 (GRCm39) missense possibly damaging 0.66
R4899:Shoc1 UTSW 4 59,062,640 (GRCm39) missense probably damaging 0.97
R5090:Shoc1 UTSW 4 59,111,108 (GRCm39) missense unknown
R5169:Shoc1 UTSW 4 59,059,618 (GRCm39) missense possibly damaging 0.66
R5297:Shoc1 UTSW 4 59,047,543 (GRCm39) missense probably benign
R5400:Shoc1 UTSW 4 59,082,432 (GRCm39) missense possibly damaging 0.83
R5419:Shoc1 UTSW 4 59,049,017 (GRCm39) missense probably benign 0.04
R5668:Shoc1 UTSW 4 59,047,399 (GRCm39) missense probably benign
R5770:Shoc1 UTSW 4 59,092,466 (GRCm39) missense probably benign 0.00
R5783:Shoc1 UTSW 4 59,076,239 (GRCm39) nonsense probably null
R5929:Shoc1 UTSW 4 59,092,497 (GRCm39) nonsense probably null
R6209:Shoc1 UTSW 4 59,043,869 (GRCm39) makesense probably null
R6230:Shoc1 UTSW 4 59,099,345 (GRCm39) missense probably benign
R6233:Shoc1 UTSW 4 59,076,245 (GRCm39) missense possibly damaging 0.92
R6351:Shoc1 UTSW 4 59,069,317 (GRCm39) missense probably benign 0.00
R6785:Shoc1 UTSW 4 59,049,066 (GRCm39) missense probably benign 0.01
R6884:Shoc1 UTSW 4 59,059,652 (GRCm39) missense possibly damaging 0.83
R7355:Shoc1 UTSW 4 59,076,155 (GRCm39) missense probably benign
R7423:Shoc1 UTSW 4 59,076,264 (GRCm39) missense probably benign 0.27
R7484:Shoc1 UTSW 4 59,062,286 (GRCm39) missense probably damaging 0.97
R7560:Shoc1 UTSW 4 59,076,140 (GRCm39) missense possibly damaging 0.66
R7999:Shoc1 UTSW 4 59,094,162 (GRCm39) missense probably benign 0.27
R8198:Shoc1 UTSW 4 59,065,174 (GRCm39) missense probably benign 0.10
R8979:Shoc1 UTSW 4 59,047,276 (GRCm39) missense possibly damaging 0.66
Posted On 2015-04-16