Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02429:Glyr1'

293046

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Glyr1

Ensembl Gene

ENSMUSG00000022536

Gene Name

glyoxylate reductase 1 homolog (Arabidopsis)

Synonyms

NDF, 2810419J22Rik, 3930401K13Rik, Npac

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.433) question?

Stock #

IGL02429

Quality Score

Status

Chromosome

Chromosomal Location

4831773-4867727 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 4837240 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Threonine at position 397 (M397T)

Ref Sequence

ENSEMBL: ENSMUSP00000111510 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000023189] [ENSMUST00000115844]

AlphaFold

Q922P9

Predicted Effect

probably benign
Transcript: ENSMUST00000023189
AA Change: M391T

PolyPhen 2 Score 0.022 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000023189
Gene: ENSMUSG00000022536
AA Change: M391T

Domain	Start	End	E-Value	Type
Pfam:PWWP	6	89	1.4e-24	PFAM
low complexity region	109	122	N/A	INTRINSIC
AT_hook	167	179	3.21e-1	SMART
Pfam:NAD_binding_2	266	422	1.2e-36	PFAM
Pfam:F420_oxidored	268	355	2e-6	PFAM
Pfam:NAD_binding_11	423	544	2.7e-25	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000115844
AA Change: M397T

PolyPhen 2 Score 0.275 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000111510
Gene: ENSMUSG00000022536
AA Change: M397T

Domain	Start	End	E-Value	Type
Pfam:PWWP	6	89	1.8e-24	PFAM
low complexity region	109	122	N/A	INTRINSIC
AT_hook	167	179	3.21e-1	SMART
Pfam:NAD_binding_2	266	428	2.6e-41	PFAM
Pfam:F420_oxidored	268	361	3.2e-9	PFAM
Pfam:NAD_binding_11	429	550	3.4e-25	PFAM

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acmsd	A	T	1: 127,687,453 (GRCm39)	D245V	probably damaging	Het
Adamts16	G	A	13: 70,935,289 (GRCm39)		probably benign	Het
Arhgap36	A	G	X: 48,583,583 (GRCm39)	D77G	possibly damaging	Het
Asap1	A	T	15: 64,039,589 (GRCm39)	M187K	probably damaging	Het
Aspm	T	C	1: 139,407,548 (GRCm39)	V2145A	probably benign	Het
Ccn6	T	C	10: 39,030,989 (GRCm39)	N178S	probably benign	Het
Cd46	T	C	1: 194,767,732 (GRCm39)	T110A	probably benign	Het
Chl1	T	A	6: 103,641,770 (GRCm39)		probably benign	Het
Clca3b	A	G	3: 144,533,896 (GRCm39)	L493S	probably damaging	Het
Col11a2	C	T	17: 34,261,266 (GRCm39)	T72M	probably damaging	Het
Cyfip1	T	A	7: 55,521,730 (GRCm39)		probably benign	Het
Frmd4b	T	C	6: 97,302,390 (GRCm39)		probably benign	Het
Golm2	A	G	2: 121,742,468 (GRCm39)	T306A	probably benign	Het
Gtf2a1l	G	T	17: 88,976,141 (GRCm39)	M1I	probably null	Het
Hdac4	A	G	1: 91,940,417 (GRCm39)	L154P	probably benign	Het
Ints8	A	T	4: 11,231,720 (GRCm39)	C422S	probably damaging	Het
Kng2	T	A	16: 22,830,829 (GRCm39)	K160I	probably damaging	Het
Lrrc23	C	A	6: 124,755,130 (GRCm39)	A136S	probably damaging	Het
Ltf	T	C	9: 110,855,193 (GRCm39)	I402T	possibly damaging	Het
Lyst	G	A	13: 13,835,541 (GRCm39)	C1741Y	probably benign	Het
Mfsd4a	T	C	1: 131,956,237 (GRCm39)	H509R	probably benign	Het
Mthfd1l	A	G	10: 4,039,334 (GRCm39)	K782E	probably damaging	Het
Mvb12b	G	A	2: 33,717,800 (GRCm39)	R114W	probably damaging	Het
Myh4	A	T	11: 67,149,808 (GRCm39)	K1818*	probably null	Het
Myo1h	C	T	5: 114,497,799 (GRCm39)		probably benign	Het
Ncapd3	T	A	9: 27,000,598 (GRCm39)	S1402T	probably benign	Het
Nutm2	A	G	13: 50,623,516 (GRCm39)	N71S	probably benign	Het
Oas1c	C	A	5: 120,940,133 (GRCm39)	M344I	probably benign	Het
Or10g7	T	A	9: 39,905,138 (GRCm39)	F11I	probably benign	Het
Phldb1	A	G	9: 44,612,247 (GRCm39)	L1019P	probably damaging	Het
Plxnc1	T	C	10: 94,718,453 (GRCm39)	E494G	probably benign	Het
Pole	T	C	5: 110,447,666 (GRCm39)	I734T	probably benign	Het
Ppp1r3b	T	C	8: 35,851,769 (GRCm39)	S203P	probably benign	Het
Pth2r	G	T	1: 65,385,998 (GRCm39)	M240I	probably benign	Het
Ptprr	T	A	10: 116,109,672 (GRCm39)	F394I	probably damaging	Het
Rabgef1	T	C	5: 130,239,329 (GRCm39)	S265P	possibly damaging	Het
Rbpjl	A	G	2: 164,255,815 (GRCm39)	D353G	possibly damaging	Het
Rfc3	A	G	5: 151,574,596 (GRCm39)	Y8H	probably benign	Het
Rph3a	A	T	5: 121,118,187 (GRCm39)		probably null	Het
Runx1t1	A	T	4: 13,865,294 (GRCm39)		probably benign	Het
Slc37a1	T	A	17: 31,519,483 (GRCm39)		probably null	Het
Slc38a10	T	C	11: 120,025,714 (GRCm39)		probably benign	Het
Slc38a6	T	C	12: 73,397,342 (GRCm39)	V328A	probably benign	Het
Slf2	T	C	19: 44,930,167 (GRCm39)	S415P	probably benign	Het
Spata17	C	A	1: 186,872,631 (GRCm39)	R60L	possibly damaging	Het
Svil	T	A	18: 5,118,369 (GRCm39)	D2237E	probably benign	Het
Swap70	T	A	7: 109,863,179 (GRCm39)	N169K	probably benign	Het
Tnfrsf11a	A	G	1: 105,755,443 (GRCm39)	D505G	probably benign	Het
Traf1	A	G	2: 34,839,115 (GRCm39)	V70A	probably benign	Het
Traf3	T	A	12: 111,209,899 (GRCm39)	V165E	probably benign	Het
Trpc5	T	C	X: 143,194,795 (GRCm39)	E570G	probably damaging	Het
Ubash3a	A	G	17: 31,460,279 (GRCm39)	N601S	probably benign	Het
Vmn2r30	C	T	7: 7,337,243 (GRCm39)	C131Y	possibly damaging	Het
Vmn2r43	T	C	7: 8,258,551 (GRCm39)	I221V	probably benign	Het
Vmn2r97	T	A	17: 19,150,596 (GRCm39)	V481E	possibly damaging	Het

Other mutations in Glyr1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01369:Glyr1	APN	16	4,838,152 (GRCm39)	missense	probably benign
IGL02332:Glyr1	APN	16	4,836,817 (GRCm39)	missense	probably damaging	1.00
IGL02407:Glyr1	APN	16	4,854,812 (GRCm39)	missense	probably benign	0.01
IGL03255:Glyr1	APN	16	4,866,621 (GRCm39)	splice site	probably null
R0020:Glyr1	UTSW	16	4,854,913 (GRCm39)	missense	probably damaging	1.00
R0309:Glyr1	UTSW	16	4,849,836 (GRCm39)	missense	probably damaging	0.98
R0694:Glyr1	UTSW	16	4,844,424 (GRCm39)	missense	probably damaging	0.99
R0971:Glyr1	UTSW	16	4,839,209 (GRCm39)	frame shift	probably null
R1347:Glyr1	UTSW	16	4,839,203 (GRCm39)	missense	probably damaging	1.00
R1347:Glyr1	UTSW	16	4,839,203 (GRCm39)	missense	probably damaging	1.00
R1382:Glyr1	UTSW	16	4,839,209 (GRCm39)	frame shift	probably null
R1383:Glyr1	UTSW	16	4,839,209 (GRCm39)	frame shift	probably null
R2137:Glyr1	UTSW	16	4,836,346 (GRCm39)	missense	probably benign	0.01
R2254:Glyr1	UTSW	16	4,836,877 (GRCm39)	missense	probably benign	0.01
R3913:Glyr1	UTSW	16	4,849,777 (GRCm39)	missense	probably damaging	1.00
R4112:Glyr1	UTSW	16	4,836,350 (GRCm39)	missense	possibly damaging	0.83
R4629:Glyr1	UTSW	16	4,854,907 (GRCm39)	missense	possibly damaging	0.70
R4795:Glyr1	UTSW	16	4,865,622 (GRCm39)	missense	probably benign	0.40
R5112:Glyr1	UTSW	16	4,836,740 (GRCm39)	nonsense	probably null
R5412:Glyr1	UTSW	16	4,854,297 (GRCm39)	missense	possibly damaging	0.87
R5757:Glyr1	UTSW	16	4,836,856 (GRCm39)	missense	probably benign	0.30
R6425:Glyr1	UTSW	16	4,854,350 (GRCm39)	splice site	probably null
R7646:Glyr1	UTSW	16	4,836,361 (GRCm39)	missense	probably damaging	1.00
R7942:Glyr1	UTSW	16	4,836,785 (GRCm39)	missense	probably benign	0.43
R8415:Glyr1	UTSW	16	4,854,329 (GRCm39)	missense	probably benign	0.35
Z1177:Glyr1	UTSW	16	4,849,837 (GRCm39)	missense	probably null	1.00

Posted On

2015-04-16