Incidental Mutation 'IGL02452:Ikzf1'
ID |
293710 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Ikzf1
|
Ensembl Gene |
ENSMUSG00000018654 |
Gene Name |
IKAROS family zinc finger 1 |
Synonyms |
Zfpn1a1, 5832432G11Rik, LyF-1, Ikaros |
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
IGL02452
|
Quality Score |
|
Status
|
|
Chromosome |
11 |
Chromosomal Location |
11634980-11722926 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to C
at 11698545 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Leucine to Proline
at position 132
(L132P)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000075992
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000018798]
[ENSMUST00000048122]
[ENSMUST00000065433]
[ENSMUST00000076700]
[ENSMUST00000126058]
|
AlphaFold |
no structure available at present |
Predicted Effect |
probably benign
Transcript: ENSMUST00000018798
|
SMART Domains |
Protein: ENSMUSP00000018798 Gene: ENSMUSG00000018654
Domain | Start | End | E-Value | Type |
ZnF_C2H2
|
58 |
80 |
8.02e-5 |
SMART |
ZnF_C2H2
|
86 |
108 |
2.57e-3 |
SMART |
ZnF_C2H2
|
114 |
137 |
8.22e-2 |
SMART |
low complexity region
|
282 |
293 |
N/A |
INTRINSIC |
ZnF_C2H2
|
371 |
393 |
7.49e0 |
SMART |
ZnF_C2H2
|
399 |
423 |
5.34e-1 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000048122
|
SMART Domains |
Protein: ENSMUSP00000046974 Gene: ENSMUSG00000018654
Domain | Start | End | E-Value | Type |
ZnF_C2H2
|
58 |
80 |
8.02e-5 |
SMART |
ZnF_C2H2
|
86 |
108 |
2.57e-3 |
SMART |
ZnF_C2H2
|
114 |
137 |
8.22e-2 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000065433
AA Change: L152P
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000067372 Gene: ENSMUSG00000018654 AA Change: L152P
Domain | Start | End | E-Value | Type |
ZnF_C2H2
|
137 |
159 |
1.43e-1 |
SMART |
ZnF_C2H2
|
165 |
187 |
8.02e-5 |
SMART |
ZnF_C2H2
|
193 |
215 |
2.57e-3 |
SMART |
ZnF_C2H2
|
221 |
244 |
8.22e-2 |
SMART |
low complexity region
|
389 |
400 |
N/A |
INTRINSIC |
ZnF_C2H2
|
478 |
500 |
7.49e0 |
SMART |
ZnF_C2H2
|
506 |
530 |
5.34e-1 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000076700
AA Change: L132P
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000075992 Gene: ENSMUSG00000018654 AA Change: L132P
Domain | Start | End | E-Value | Type |
ZnF_C2H2
|
117 |
139 |
1.43e-1 |
SMART |
ZnF_C2H2
|
145 |
167 |
8.02e-5 |
SMART |
ZnF_C2H2
|
173 |
195 |
2.57e-3 |
SMART |
ZnF_C2H2
|
201 |
224 |
8.22e-2 |
SMART |
low complexity region
|
369 |
380 |
N/A |
INTRINSIC |
ZnF_C2H2
|
458 |
480 |
7.49e0 |
SMART |
ZnF_C2H2
|
486 |
510 |
5.34e-1 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000126058
|
SMART Domains |
Protein: ENSMUSP00000119960 Gene: ENSMUSG00000018654
Domain | Start | End | E-Value | Type |
ZnF_C2H2
|
58 |
78 |
2.14e0 |
SMART |
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: The protein encoded by this gene belongs to a family of transcription factors that are characterized by a set of four DNA-binding zinc fingers at the N-terminus and two C-terminal zinc fingers involved in protein dimerization. It is regulated by both epigenetic and transcription factors. This protein is a transcriptional regulator of hematopoietic cell development and homeostasis. In addition, it is required to confer temporal competence to retinal progenitor cells during embryogenesis, demonstrating an essential function in nervous system development. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Sep 2014] PHENOTYPE: Homozygous mutants have a variety of T, B, and hematopoeitic cell maturation defects. Heterozygotes for one allele exhibit dominant negative effects and mice develop lymphoproliferative disorders. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 50 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Acadm |
C |
A |
3: 153,647,607 (GRCm39) |
V11F |
probably damaging |
Het |
Alk |
A |
T |
17: 72,209,620 (GRCm39) |
Y941* |
probably null |
Het |
Blm |
A |
T |
7: 80,153,125 (GRCm39) |
|
probably null |
Het |
Blvrb |
T |
C |
7: 27,158,765 (GRCm39) |
V55A |
possibly damaging |
Het |
Cdh23 |
T |
A |
10: 60,153,721 (GRCm39) |
T2288S |
probably damaging |
Het |
Csnk1g1 |
T |
A |
9: 65,915,067 (GRCm39) |
M242K |
probably damaging |
Het |
Cyp2c29 |
G |
A |
19: 39,279,291 (GRCm39) |
G96D |
possibly damaging |
Het |
Cyp2d26 |
T |
A |
15: 82,676,827 (GRCm39) |
H173L |
probably benign |
Het |
Cyp2g1 |
T |
A |
7: 26,510,871 (GRCm39) |
S131T |
probably benign |
Het |
Dusp29 |
G |
A |
14: 21,752,990 (GRCm39) |
T52I |
probably damaging |
Het |
Dzip3 |
T |
A |
16: 48,758,900 (GRCm39) |
|
probably benign |
Het |
Espl1 |
T |
C |
15: 102,208,274 (GRCm39) |
S427P |
probably damaging |
Het |
Fasn |
A |
T |
11: 120,699,006 (GRCm39) |
D2424E |
probably benign |
Het |
Flrt2 |
G |
A |
12: 95,746,257 (GRCm39) |
M198I |
probably benign |
Het |
Gen1 |
A |
T |
12: 11,292,576 (GRCm39) |
S404R |
probably benign |
Het |
Gm11596 |
A |
T |
11: 99,683,806 (GRCm39) |
C105S |
unknown |
Het |
Hdlbp |
A |
T |
1: 93,345,233 (GRCm39) |
V714D |
probably damaging |
Het |
Igkv4-80 |
A |
G |
6: 68,993,816 (GRCm39) |
V25A |
probably benign |
Het |
Igkv8-27 |
C |
T |
6: 70,148,925 (GRCm39) |
W76* |
probably null |
Het |
Kcna6 |
C |
A |
6: 126,715,443 (GRCm39) |
C482F |
possibly damaging |
Het |
Lhx9 |
A |
T |
1: 138,769,580 (GRCm39) |
L47Q |
probably damaging |
Het |
Lrp4 |
T |
A |
2: 91,304,347 (GRCm39) |
D175E |
probably damaging |
Het |
Lrrtm3 |
T |
C |
10: 63,923,815 (GRCm39) |
K451E |
probably damaging |
Het |
Mcm9 |
C |
T |
10: 53,417,653 (GRCm39) |
V17M |
probably damaging |
Het |
Mios |
T |
A |
6: 8,222,492 (GRCm39) |
S475R |
probably benign |
Het |
Mmp24 |
C |
T |
2: 155,657,708 (GRCm39) |
R533C |
probably damaging |
Het |
Moxd1 |
C |
T |
10: 24,158,650 (GRCm39) |
P435S |
probably damaging |
Het |
Mta2 |
T |
A |
19: 8,927,670 (GRCm39) |
I497N |
probably benign |
Het |
Mtus2 |
T |
C |
5: 148,014,473 (GRCm39) |
V422A |
probably benign |
Het |
Ndufaf1 |
A |
T |
2: 119,486,907 (GRCm39) |
F260Y |
probably damaging |
Het |
Nfasc |
C |
T |
1: 132,548,662 (GRCm39) |
|
probably null |
Het |
Nid1 |
A |
T |
13: 13,683,305 (GRCm39) |
T1128S |
probably benign |
Het |
Odad2 |
C |
T |
18: 7,129,461 (GRCm39) |
E906K |
probably damaging |
Het |
Or51f1d |
A |
G |
7: 102,701,138 (GRCm39) |
D211G |
probably benign |
Het |
Pcdh12 |
G |
A |
18: 38,414,746 (GRCm39) |
P793L |
probably benign |
Het |
Pclo |
A |
T |
5: 14,726,980 (GRCm39) |
|
probably benign |
Het |
Prpf31 |
T |
A |
7: 3,637,185 (GRCm39) |
N161K |
possibly damaging |
Het |
Prpf6 |
T |
G |
2: 181,290,878 (GRCm39) |
N656K |
probably benign |
Het |
Ptprn |
T |
A |
1: 75,234,813 (GRCm39) |
H258L |
probably benign |
Het |
Rab19 |
A |
G |
6: 39,366,732 (GRCm39) |
T216A |
probably benign |
Het |
Ryr3 |
A |
C |
2: 112,664,335 (GRCm39) |
L1652W |
probably damaging |
Het |
Six2 |
A |
C |
17: 85,992,806 (GRCm39) |
S232R |
possibly damaging |
Het |
Spag17 |
T |
C |
3: 99,934,707 (GRCm39) |
V663A |
probably benign |
Het |
Spag5 |
A |
G |
11: 78,195,449 (GRCm39) |
N252S |
probably benign |
Het |
Spata31e4 |
A |
T |
13: 50,857,113 (GRCm39) |
H917L |
probably damaging |
Het |
Sptb |
C |
T |
12: 76,655,810 (GRCm39) |
|
probably null |
Het |
Synj1 |
A |
G |
16: 90,758,253 (GRCm39) |
|
probably benign |
Het |
Tekt2 |
T |
C |
4: 126,218,645 (GRCm39) |
H36R |
possibly damaging |
Het |
Tjp1 |
A |
T |
7: 64,962,403 (GRCm39) |
M1258K |
probably damaging |
Het |
Txnrd3 |
T |
C |
6: 89,651,777 (GRCm39) |
*502Q |
probably null |
Het |
|
Other mutations in Ikzf1 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01302:Ikzf1
|
APN |
11 |
11,718,923 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01367:Ikzf1
|
APN |
11 |
11,698,358 (GRCm39) |
missense |
probably benign |
0.04 |
IGL01823:Ikzf1
|
APN |
11 |
11,719,091 (GRCm39) |
missense |
possibly damaging |
0.64 |
IGL02342:Ikzf1
|
APN |
11 |
11,650,216 (GRCm39) |
utr 5 prime |
probably benign |
|
IGL03209:Ikzf1
|
APN |
11 |
11,650,226 (GRCm39) |
missense |
probably benign |
|
IGL03236:Ikzf1
|
APN |
11 |
11,657,848 (GRCm39) |
missense |
probably damaging |
1.00 |
Herrscher
|
UTSW |
11 |
11,718,961 (GRCm39) |
nonsense |
probably null |
|
Star_lord
|
UTSW |
11 |
11,719,448 (GRCm39) |
missense |
probably damaging |
1.00 |
waxwing
|
UTSW |
11 |
11,698,464 (GRCm39) |
nonsense |
probably null |
|
R0133:Ikzf1
|
UTSW |
11 |
11,691,015 (GRCm39) |
splice site |
probably null |
|
R0417:Ikzf1
|
UTSW |
11 |
11,719,352 (GRCm39) |
missense |
probably benign |
0.19 |
R0633:Ikzf1
|
UTSW |
11 |
11,719,223 (GRCm39) |
missense |
probably damaging |
1.00 |
R0734:Ikzf1
|
UTSW |
11 |
11,708,195 (GRCm39) |
missense |
probably damaging |
1.00 |
R1693:Ikzf1
|
UTSW |
11 |
11,657,838 (GRCm39) |
missense |
probably damaging |
1.00 |
R2114:Ikzf1
|
UTSW |
11 |
11,719,473 (GRCm39) |
missense |
probably damaging |
1.00 |
R2927:Ikzf1
|
UTSW |
11 |
11,719,324 (GRCm39) |
missense |
probably damaging |
1.00 |
R4250:Ikzf1
|
UTSW |
11 |
11,704,166 (GRCm39) |
missense |
probably damaging |
1.00 |
R5156:Ikzf1
|
UTSW |
11 |
11,719,448 (GRCm39) |
missense |
probably damaging |
1.00 |
R5912:Ikzf1
|
UTSW |
11 |
11,698,464 (GRCm39) |
nonsense |
probably null |
|
R6274:Ikzf1
|
UTSW |
11 |
11,718,961 (GRCm39) |
nonsense |
probably null |
|
R7614:Ikzf1
|
UTSW |
11 |
11,719,019 (GRCm39) |
missense |
probably damaging |
1.00 |
R7727:Ikzf1
|
UTSW |
11 |
11,698,339 (GRCm39) |
missense |
probably damaging |
1.00 |
R7759:Ikzf1
|
UTSW |
11 |
11,719,256 (GRCm39) |
missense |
probably damaging |
0.98 |
R8758:Ikzf1
|
UTSW |
11 |
11,711,359 (GRCm39) |
missense |
probably benign |
0.03 |
R8946:Ikzf1
|
UTSW |
11 |
11,719,485 (GRCm39) |
missense |
possibly damaging |
0.86 |
R8998:Ikzf1
|
UTSW |
11 |
11,635,013 (GRCm39) |
start gained |
probably benign |
|
R8999:Ikzf1
|
UTSW |
11 |
11,635,013 (GRCm39) |
start gained |
probably benign |
|
R9624:Ikzf1
|
UTSW |
11 |
11,719,219 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1176:Ikzf1
|
UTSW |
11 |
11,708,194 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
Posted On |
2015-04-16 |