Incidental Mutation 'IGL02506:Cdh5'
ID 296320
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Cdh5
Ensembl Gene ENSMUSG00000031871
Gene Name cadherin 5
Synonyms VECD, CD144, VEcad, VEC, VE-cadherin, 7B4/cadherin-5, VE-Cad
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # IGL02506
Quality Score
Status
Chromosome 8
Chromosomal Location 104828257-104871143 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 104864454 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Aspartic acid at position 472 (N472D)
Ref Sequence ENSEMBL: ENSMUSP00000034339 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000034339]
AlphaFold P55284
PDB Structure NMR structure of mouse Par3-PDZ3 in complex with VE-Cadherin C-terminus [SOLUTION NMR]
Predicted Effect probably damaging
Transcript: ENSMUST00000034339
AA Change: N472D

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000034339
Gene: ENSMUSG00000031871
AA Change: N472D

DomainStartEndE-ValueType
signal peptide 1 24 N/A INTRINSIC
CA 66 147 3.03e-10 SMART
CA 171 254 3.19e-18 SMART
CA 278 370 7.92e-14 SMART
CA 392 476 1.09e-16 SMART
CA 499 583 2.16e-6 SMART
transmembrane domain 598 620 N/A INTRINSIC
Pfam:Cadherin_C 625 776 1.1e-43 PFAM
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: This gene encodes a member of the cadherin family of calcium-dependent glycoproteins that mediate cell adhesion and regulate many morphogenetic events during development. The encoded preproprotein is further processed to generate a mature protein. Mice lacking the encoded protein die in utero due to vascular insufficiency, caused by increased endothelial apoptosis. Multiple distinct genes of the cadherin family, including this gene, are found on chromosome 8. [provided by RefSeq, Oct 2015]
PHENOTYPE: Homozygous inactivation or cytosolic truncation of this gene causes embryonic growth retardation, abnormal somite and heart development, impaired remodeling and maturation of endothelial cells, increased endothelial apoptosis and severe vascular defects leading to embryonic death at midgestation. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 57 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcg8 A G 17: 84,999,916 (GRCm39) E189G possibly damaging Het
Acad11 T C 9: 103,968,931 (GRCm39) probably null Het
Adcy7 G T 8: 89,044,571 (GRCm39) R488L probably damaging Het
Akt1 C T 12: 112,625,714 (GRCm39) probably benign Het
Ano9 C T 7: 140,682,167 (GRCm39) probably benign Het
Arhgap15 A G 2: 43,953,820 (GRCm39) D182G possibly damaging Het
Asxl3 T A 18: 22,585,456 (GRCm39) V127D probably benign Het
Cacna1g A G 11: 94,319,955 (GRCm39) M1407T probably damaging Het
Card9 A C 2: 26,244,427 (GRCm39) probably benign Het
Ceacam2 T A 7: 25,227,379 (GRCm39) T343S probably benign Het
Cic T A 7: 24,990,282 (GRCm39) C1928S probably benign Het
Clk3 C T 9: 57,661,927 (GRCm39) W31* probably null Het
Cntn4 A G 6: 106,595,349 (GRCm39) T489A probably benign Het
Crispld1 G A 1: 17,826,529 (GRCm39) R431H probably damaging Het
Crmp1 T A 5: 37,436,199 (GRCm39) probably benign Het
Cyld A G 8: 89,456,218 (GRCm39) T423A possibly damaging Het
Cyp3a44 A T 5: 145,736,198 (GRCm39) I84N probably damaging Het
D2hgdh A G 1: 93,757,507 (GRCm39) N141D probably damaging Het
Dip2b T A 15: 100,055,162 (GRCm39) L341Q probably damaging Het
F3 C T 3: 121,525,323 (GRCm39) T53I possibly damaging Het
Fam227b T A 2: 125,845,831 (GRCm39) Y386F probably benign Het
Fmn1 A T 2: 113,355,640 (GRCm39) T694S unknown Het
Gcnt2 T A 13: 41,040,856 (GRCm39) V5E probably benign Het
Herpud1 G T 8: 95,121,270 (GRCm39) E355* probably null Het
Igf1r T C 7: 67,843,144 (GRCm39) S752P probably benign Het
Iqsec1 T C 6: 90,649,057 (GRCm39) I687V possibly damaging Het
Kdm5a T C 6: 120,409,110 (GRCm39) S1598P probably damaging Het
Klk1b9 A G 7: 43,445,063 (GRCm39) E185G probably benign Het
Myo16 G T 8: 10,440,217 (GRCm39) R423L probably damaging Het
Myo7b T C 18: 32,100,207 (GRCm39) E1609G probably damaging Het
Nom1 T A 5: 29,644,814 (GRCm39) probably benign Het
Nomo1 A G 7: 45,727,480 (GRCm39) I1040V possibly damaging Het
Or8b39 G A 9: 37,996,741 (GRCm39) G203D probably damaging Het
Paqr9 T C 9: 95,442,748 (GRCm39) V246A probably benign Het
Pfkfb4 A T 9: 108,859,404 (GRCm39) D437V probably benign Het
Phldb1 G T 9: 44,622,223 (GRCm39) D797E probably benign Het
Pkd1l3 A G 8: 110,374,132 (GRCm39) E1399G probably damaging Het
Plekhs1 G A 19: 56,460,198 (GRCm39) C97Y probably damaging Het
Plscr4 A T 9: 92,372,044 (GRCm39) I272L possibly damaging Het
Prlhr A C 19: 60,456,366 (GRCm39) Y67D probably damaging Het
Rab3gap2 A G 1: 184,984,221 (GRCm39) probably benign Het
Rad23b T C 4: 55,382,511 (GRCm39) V238A probably benign Het
Sel1l2 T C 2: 140,117,380 (GRCm39) T164A possibly damaging Het
Serpinh1 T A 7: 98,996,199 (GRCm39) K295M probably damaging Het
Slc45a4 T C 15: 73,453,687 (GRCm39) E770G probably benign Het
Spag4 T C 2: 155,911,142 (GRCm39) L390P probably damaging Het
Stip1 A G 19: 7,012,857 (GRCm39) probably benign Het
Tacr1 A G 6: 82,380,739 (GRCm39) N50S probably damaging Het
Tg T C 15: 66,613,443 (GRCm39) V433A possibly damaging Het
Ubap1l T A 9: 65,276,493 (GRCm39) probably benign Het
Usp40 A T 1: 87,909,738 (GRCm39) I572K probably damaging Het
Vps13b G T 15: 35,917,308 (GRCm39) E3717D probably damaging Het
Wdr81 T C 11: 75,335,232 (GRCm39) N1778S probably benign Het
Ylpm1 T A 12: 85,095,965 (GRCm39) F1162Y probably damaging Het
Zbtb10 T A 3: 9,330,297 (GRCm39) F552I probably damaging Het
Zfp507 T C 7: 35,475,891 (GRCm39) I811V probably damaging Het
Zfp663 A T 2: 165,195,871 (GRCm39) V116D probably benign Het
Other mutations in Cdh5
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01459:Cdh5 APN 8 104,864,449 (GRCm39) missense probably damaging 1.00
IGL02737:Cdh5 APN 8 104,869,560 (GRCm39) missense probably damaging 1.00
IGL03287:Cdh5 APN 8 104,854,747 (GRCm39) missense probably damaging 1.00
IGL03297:Cdh5 APN 8 104,854,831 (GRCm39) missense probably damaging 1.00
R0015:Cdh5 UTSW 8 104,867,559 (GRCm39) missense probably benign
R0015:Cdh5 UTSW 8 104,867,559 (GRCm39) missense probably benign
R0126:Cdh5 UTSW 8 104,867,314 (GRCm39) critical splice acceptor site probably null
R0167:Cdh5 UTSW 8 104,863,367 (GRCm39) missense possibly damaging 0.51
R0592:Cdh5 UTSW 8 104,857,534 (GRCm39) splice site probably null
R1760:Cdh5 UTSW 8 104,854,801 (GRCm39) missense probably benign
R1826:Cdh5 UTSW 8 104,857,723 (GRCm39) missense possibly damaging 0.93
R1827:Cdh5 UTSW 8 104,839,541 (GRCm39) missense possibly damaging 0.96
R1840:Cdh5 UTSW 8 104,853,248 (GRCm39) nonsense probably null
R1993:Cdh5 UTSW 8 104,864,447 (GRCm39) missense probably damaging 0.97
R2219:Cdh5 UTSW 8 104,869,538 (GRCm39) missense possibly damaging 0.94
R2239:Cdh5 UTSW 8 104,852,304 (GRCm39) missense possibly damaging 0.54
R2281:Cdh5 UTSW 8 104,852,365 (GRCm39) missense probably damaging 1.00
R2380:Cdh5 UTSW 8 104,852,304 (GRCm39) missense possibly damaging 0.54
R3418:Cdh5 UTSW 8 104,856,002 (GRCm39) missense probably damaging 0.98
R3419:Cdh5 UTSW 8 104,856,002 (GRCm39) missense probably damaging 0.98
R3429:Cdh5 UTSW 8 104,857,600 (GRCm39) missense possibly damaging 0.91
R4491:Cdh5 UTSW 8 104,839,672 (GRCm39) missense probably damaging 1.00
R4823:Cdh5 UTSW 8 104,869,301 (GRCm39) missense probably benign 0.00
R5071:Cdh5 UTSW 8 104,867,334 (GRCm39) missense probably damaging 0.99
R5265:Cdh5 UTSW 8 104,869,371 (GRCm39) missense probably benign 0.00
R5383:Cdh5 UTSW 8 104,864,479 (GRCm39) missense probably benign 0.17
R5447:Cdh5 UTSW 8 104,855,994 (GRCm39) missense probably damaging 0.99
R5580:Cdh5 UTSW 8 104,852,126 (GRCm39) nonsense probably null
R5876:Cdh5 UTSW 8 104,869,209 (GRCm39) missense probably damaging 1.00
R5934:Cdh5 UTSW 8 104,864,900 (GRCm39) missense probably benign 0.00
R6378:Cdh5 UTSW 8 104,853,168 (GRCm39) splice site probably null
R7110:Cdh5 UTSW 8 104,867,400 (GRCm39) missense probably damaging 1.00
R7141:Cdh5 UTSW 8 104,839,633 (GRCm39) missense probably benign 0.20
R7324:Cdh5 UTSW 8 104,869,425 (GRCm39) missense probably damaging 1.00
R7658:Cdh5 UTSW 8 104,856,033 (GRCm39) critical splice donor site probably null
R7806:Cdh5 UTSW 8 104,867,448 (GRCm39) missense probably damaging 0.98
R7811:Cdh5 UTSW 8 104,852,235 (GRCm39) missense possibly damaging 0.72
R7958:Cdh5 UTSW 8 104,839,649 (GRCm39) missense probably benign 0.01
R8270:Cdh5 UTSW 8 104,839,672 (GRCm39) missense probably benign 0.11
R8424:Cdh5 UTSW 8 104,856,003 (GRCm39) missense probably benign 0.00
R8432:Cdh5 UTSW 8 104,839,698 (GRCm39) missense probably damaging 1.00
R8888:Cdh5 UTSW 8 104,852,092 (GRCm39) missense possibly damaging 0.95
R9190:Cdh5 UTSW 8 104,867,337 (GRCm39) missense probably damaging 1.00
R9738:Cdh5 UTSW 8 104,863,329 (GRCm39) missense probably damaging 0.99
X0067:Cdh5 UTSW 8 104,869,169 (GRCm39) missense probably damaging 0.96
Posted On 2015-04-16