Incidental Mutation 'IGL02531:Snx9'
ID 297299
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Snx9
Ensembl Gene ENSMUSG00000002365
Gene Name sorting nexin 9
Synonyms SH3PX1, SDP1
Accession Numbers
Essential gene? Probably essential (E-score: 0.861) question?
Stock # IGL02531
Quality Score
Chromosome 17
Chromosomal Location 5841329-5931954 bp(+) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) T to C at 5891820 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Valine to Alanine at position 74 (V74A)
Ref Sequence ENSEMBL: ENSMUSP00000002436 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000002436]
AlphaFold Q91VH2
PDB Structure Solution structure of the SH3 domain from mouse sorting nexin-9 [SOLUTION NMR]
Predicted Effect probably benign
Transcript: ENSMUST00000002436
AA Change: V74A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000002436
Gene: ENSMUSG00000002365
AA Change: V74A

SH3 3 61 1.51e-16 SMART
low complexity region 84 100 N/A INTRINSIC
low complexity region 160 170 N/A INTRINSIC
PX 247 357 4.15e-23 SMART
Pfam:BAR_3_WASP_bdg 358 593 2.4e-120 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000231803
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the sorting nexin family. Members of this family contain a phosphoinositide binding domain, and are involved in intracellular trafficking. The encoded protein does not contain a coiled coil region, like some family members, but does contain a SRC homology domain near its N-terminus. The encoded protein is reported to have a variety of interaction partners, including of adaptor protein 2 , dynamin, tyrosine kinase non-receptor 2, Wiskott-Aldrich syndrome-like, and ARP3 actin-related protein 3. The encoded protein is implicated in several stages of intracellular trafficking, including endocytosis, macropinocytosis, and F-actin nucleation. [provided by RefSeq, Jul 2013]
Allele List at MGI
Other mutations in this stock
Total: 34 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aak1 C A 6: 86,956,447 (GRCm38) H467N unknown Het
Alb A G 5: 90,467,448 (GRCm38) D273G probably damaging Het
Arap3 A G 18: 37,989,751 (GRCm38) S531P probably damaging Het
Bmpr2 T A 1: 59,845,714 (GRCm38) probably null Het
Chd7 G A 4: 8,854,134 (GRCm38) R1902H probably damaging Het
Csgalnact1 C A 8: 68,401,492 (GRCm38) G219V probably damaging Het
Cyp2b13 A T 7: 26,061,605 (GRCm38) H29L possibly damaging Het
Enpp5 G T 17: 44,080,952 (GRCm38) V91F probably damaging Het
Fam210b T C 2: 172,352,755 (GRCm38) Y176H probably damaging Het
Fam83b T C 9: 76,492,000 (GRCm38) E607G possibly damaging Het
Gm4788 T C 1: 139,774,569 (GRCm38) K59R probably benign Het
Hhla1 C T 15: 65,967,407 (GRCm38) probably benign Het
Kdm3b A G 18: 34,795,729 (GRCm38) T178A probably benign Het
Klf1 T A 8: 84,904,808 (GRCm38) F334I probably damaging Het
Klra8 A G 6: 130,118,970 (GRCm38) S220P possibly damaging Het
Medag A G 5: 149,422,151 (GRCm38) N99S probably benign Het
Muc6 T C 7: 141,636,940 (GRCm38) T2607A possibly damaging Het
Mug2 T G 6: 122,072,771 (GRCm38) L921R probably damaging Het
Nacad T C 11: 6,598,580 (GRCm38) N1385D possibly damaging Het
Nin A G 12: 70,020,932 (GRCm38) F1983L probably benign Het
Nipal4 T C 11: 46,151,325 (GRCm38) I176M probably damaging Het
Orc6 T C 8: 85,303,369 (GRCm38) S47P probably damaging Het
Ovch2 C T 7: 107,790,198 (GRCm38) C341Y probably damaging Het
Polq T A 16: 37,062,374 (GRCm38) H1633Q possibly damaging Het
Rab23 T C 1: 33,738,280 (GRCm38) probably benign Het
Rai14 A G 15: 10,574,782 (GRCm38) S697P probably damaging Het
Rnf213 T C 11: 119,436,802 (GRCm38) F1872L probably benign Het
Sdhc T C 1: 171,136,018 (GRCm38) H127R probably damaging Het
Spata31d1d A G 13: 59,727,934 (GRCm38) S596P possibly damaging Het
Syt14 T C 1: 192,901,934 (GRCm38) *78W probably null Het
Thoc1 A G 18: 9,970,258 (GRCm38) T203A probably benign Het
Trmt13 A G 3: 116,592,191 (GRCm38) probably null Het
Ttc28 A G 5: 111,225,850 (GRCm38) I1020V probably damaging Het
Vmn2r16 A G 5: 109,340,268 (GRCm38) T336A probably damaging Het
Other mutations in Snx9
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00332:Snx9 APN 17 5,899,361 (GRCm38) missense probably benign
IGL00417:Snx9 APN 17 5,891,897 (GRCm38) missense probably benign 0.03
IGL01827:Snx9 APN 17 5,887,012 (GRCm38) missense probably benign 0.04
IGL02710:Snx9 APN 17 5,908,598 (GRCm38) missense probably damaging 1.00
IGL03088:Snx9 APN 17 5,924,610 (GRCm38) missense probably benign
san_angelo UTSW 17 5,891,809 (GRCm38) nonsense probably null
PIT4495001:Snx9 UTSW 17 5,920,126 (GRCm38) missense possibly damaging 0.54
R0555:Snx9 UTSW 17 5,918,413 (GRCm38) missense probably damaging 0.97
R1015:Snx9 UTSW 17 5,920,127 (GRCm38) missense probably benign 0.12
R1065:Snx9 UTSW 17 5,902,361 (GRCm38) splice site probably benign
R1421:Snx9 UTSW 17 5,902,484 (GRCm38) missense probably benign 0.45
R1657:Snx9 UTSW 17 5,918,436 (GRCm38) missense possibly damaging 0.65
R1823:Snx9 UTSW 17 5,920,671 (GRCm38) missense probably damaging 1.00
R1914:Snx9 UTSW 17 5,928,256 (GRCm38) missense possibly damaging 0.65
R3703:Snx9 UTSW 17 5,928,200 (GRCm38) splice site probably null
R3871:Snx9 UTSW 17 5,891,781 (GRCm38) missense probably benign 0.00
R4375:Snx9 UTSW 17 5,908,626 (GRCm38) nonsense probably null
R4412:Snx9 UTSW 17 5,908,394 (GRCm38) missense probably damaging 0.96
R4669:Snx9 UTSW 17 5,927,224 (GRCm38) missense probably damaging 1.00
R4974:Snx9 UTSW 17 5,902,519 (GRCm38) splice site probably null
R5038:Snx9 UTSW 17 5,887,073 (GRCm38) missense probably benign 0.12
R5137:Snx9 UTSW 17 5,928,253 (GRCm38) missense probably damaging 1.00
R5369:Snx9 UTSW 17 5,920,580 (GRCm38) missense probably damaging 1.00
R5459:Snx9 UTSW 17 5,920,638 (GRCm38) missense probably damaging 0.99
R5624:Snx9 UTSW 17 5,891,809 (GRCm38) nonsense probably null
R5847:Snx9 UTSW 17 5,924,621 (GRCm38) missense possibly damaging 0.94
R5953:Snx9 UTSW 17 5,908,403 (GRCm38) missense probably damaging 1.00
R5953:Snx9 UTSW 17 5,908,402 (GRCm38) missense probably damaging 1.00
R6263:Snx9 UTSW 17 5,887,049 (GRCm38) missense probably damaging 0.98
R6481:Snx9 UTSW 17 5,922,209 (GRCm38) critical splice donor site probably null
R6491:Snx9 UTSW 17 5,920,162 (GRCm38) missense probably benign 0.00
R7873:Snx9 UTSW 17 5,918,476 (GRCm38) missense possibly damaging 0.81
R8471:Snx9 UTSW 17 5,890,090 (GRCm38) missense probably damaging 1.00
R9451:Snx9 UTSW 17 5,899,493 (GRCm38) missense probably damaging 0.99
R9748:Snx9 UTSW 17 5,899,395 (GRCm38) missense probably benign
Posted On 2015-04-16