Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02547:Retreg3'

297891

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Retreg3

Ensembl Gene

ENSMUSG00000017802

Gene Name

reticulophagy regulator family member 3

Synonyms

Fam134c, 1300010M03Rik, 4933404C01Rik

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

IGL02547

Quality Score

Status

Chromosome

Chromosomal Location

101096322-101119893 bp(-) (GRCm38)

Type of Mutation

nonsense

DNA Base Change (assembly)

A to T at 101106378 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Stop codon at position 92 (L92*)

Ref Sequence

ENSEMBL: ENSMUSP00000017946 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000017946] [ENSMUST00000107295]

AlphaFold

Q9CQV4

Predicted Effect

probably null
Transcript: ENSMUST00000017946
AA Change: L92*

SMART Domains

Protein: ENSMUSP00000017946
Gene: ENSMUSG00000017802
AA Change: L92*

Domain	Start	End	E-Value	Type
low complexity region	2	18	N/A	INTRINSIC
transmembrane domain	79	101	N/A	INTRINSIC
transmembrane domain	186	208	N/A	INTRINSIC
low complexity region	376	397	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000107295

SMART Domains

Protein: ENSMUSP00000102916
Gene: ENSMUSG00000017802

Domain	Start	End	E-Value	Type
transmembrane domain	5	27	N/A	INTRINSIC
low complexity region	195	216	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000142733

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000147201

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000154513

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
5430403G16Rik	C	T	5: 109,678,762 (GRCm38)		probably null	Het
Akap6	T	A	12: 53,140,696 (GRCm38)	L1631H	probably damaging	Het
Atf7ip	T	A	6: 136,603,276 (GRCm38)		probably benign	Het
Atp5o	A	T	16: 91,928,961 (GRCm38)	Y48N	probably damaging	Het
Birc6	T	G	17: 74,579,645 (GRCm38)	M656R	probably benign	Het
Camkk1	A	G	11: 73,038,433 (GRCm38)	R455G	probably benign	Het
Casr	A	T	16: 36,515,674 (GRCm38)	M91K	probably benign	Het
Ccdc28a	A	T	10: 18,214,146 (GRCm38)	V124D	possibly damaging	Het
Ccnh	T	C	13: 85,202,504 (GRCm38)		probably benign	Het
Cdc37	G	T	9: 21,139,966 (GRCm38)		probably benign	Het
Cdon	A	G	9: 35,478,654 (GRCm38)	D868G	probably damaging	Het
Cyp4f15	A	G	17: 32,700,255 (GRCm38)	R351G	probably benign	Het
Dclk3	T	C	9: 111,469,023 (GRCm38)	I545T	probably damaging	Het
Dock4	A	G	12: 40,737,479 (GRCm38)	M798V	probably benign	Het
Gas7	A	T	11: 67,665,435 (GRCm38)	Q200L	probably damaging	Het
Gm15448	T	C	7: 3,821,661 (GRCm38)	D573G	probably damaging	Het
Gm4758	A	T	16: 36,312,526 (GRCm38)		probably benign	Het
Gm6614	A	T	6: 141,990,390 (GRCm38)	L323Q	probably damaging	Het
Ica1	T	C	6: 8,670,691 (GRCm38)		probably null	Het
Idh3a	T	A	9: 54,592,395 (GRCm38)	V31D	probably benign	Het
Il3ra	A	T	14: 14,351,970 (GRCm38)	T247S	probably benign	Het
Itgb7	A	G	15: 102,218,510 (GRCm38)	C497R	probably damaging	Het
Itm2c	T	C	1: 85,906,461 (GRCm38)	Y166H	probably damaging	Het
Mphosph8	A	G	14: 56,672,484 (GRCm38)	D98G	probably damaging	Het
Mstn	A	T	1: 53,064,125 (GRCm38)	I207F	probably benign	Het
Muc15	A	G	2: 110,731,305 (GRCm38)	R29G	probably damaging	Het
Neb	T	A	2: 52,188,730 (GRCm38)	T142S	probably damaging	Het
Nipbl	G	A	15: 8,351,598 (GRCm38)	T570I	probably benign	Het
Nr5a2	T	A	1: 136,940,927 (GRCm38)	M196L	probably benign	Het
Nrp1	C	A	8: 128,493,031 (GRCm38)	F643L	probably benign	Het
Olfr1098	A	G	2: 86,923,028 (GRCm38)	F168S	probably damaging	Het
Olfr1441	A	T	19: 12,422,311 (GRCm38)	M1L	probably benign	Het
Olfr600	A	G	7: 103,346,244 (GRCm38)	F228S	probably damaging	Het
Olfr625-ps1	T	C	7: 103,682,766 (GRCm38)	I16T	probably benign	Het
Osbpl9	C	T	4: 109,068,483 (GRCm38)	W446*	probably null	Het
Pced1a	T	C	2: 130,419,707 (GRCm38)	D342G	possibly damaging	Het
Prkcd	C	A	14: 30,599,469 (GRCm38)	W555L	probably damaging	Het
Prpf31	T	C	7: 3,630,899 (GRCm38)	S78P	probably benign	Het
Psg27	T	C	7: 18,560,628 (GRCm38)	T285A	probably benign	Het
Rmdn1	A	G	4: 19,605,501 (GRCm38)	K282E	possibly damaging	Het
Sept8	G	T	11: 53,537,265 (GRCm38)	R302L	probably damaging	Het
Serpina3a	A	G	12: 104,116,543 (GRCm38)	I192V	probably damaging	Het
Sgce	T	C	6: 4,711,301 (GRCm38)		probably benign	Het
Spats1	A	T	17: 45,474,817 (GRCm38)		probably benign	Het
Tcerg1l	C	T	7: 138,248,371 (GRCm38)		probably null	Het
Ttn	A	G	2: 76,729,386 (GRCm38)	V21230A	probably damaging	Het
Ubxn11	A	C	4: 134,109,584 (GRCm38)	D41A	possibly damaging	Het
Vps13c	T	G	9: 67,908,019 (GRCm38)	I979S	possibly damaging	Het
Zc3h6	T	A	2: 129,015,611 (GRCm38)	H683Q	probably benign	Het
Zfp518a	G	A	19: 40,914,617 (GRCm38)	G997R	probably damaging	Het
Zfp629	T	C	7: 127,611,674 (GRCm38)		probably null	Het

Other mutations in Retreg3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01085:Retreg3	APN	11	101,100,925 (GRCm38)	nonsense	probably null
IGL03160:Retreg3	APN	11	101,099,675 (GRCm38)	missense	probably benign	0.03
IGL03405:Retreg3	APN	11	101,100,969 (GRCm38)	missense	probably damaging	1.00
R0646:Retreg3	UTSW	11	101,098,629 (GRCm38)	unclassified	probably benign
R1625:Retreg3	UTSW	11	101,102,049 (GRCm38)	start codon destroyed	probably null
R2215:Retreg3	UTSW	11	101,119,633 (GRCm38)	nonsense	probably null
R4361:Retreg3	UTSW	11	101,103,887 (GRCm38)	splice site	probably null
R5586:Retreg3	UTSW	11	101,106,339 (GRCm38)	missense	probably damaging	1.00
R5791:Retreg3	UTSW	11	101,100,943 (GRCm38)	missense	probably damaging	0.99
R6026:Retreg3	UTSW	11	101,106,400 (GRCm38)	missense	probably damaging	0.99
R6179:Retreg3	UTSW	11	101,103,895 (GRCm38)	start gained	probably benign
R6209:Retreg3	UTSW	11	101,119,700 (GRCm38)	missense	probably benign	0.27
R6869:Retreg3	UTSW	11	101,119,818 (GRCm38)	start gained	probably benign
R7553:Retreg3	UTSW	11	101,106,390 (GRCm38)	missense	possibly damaging	0.86
R7615:Retreg3	UTSW	11	101,102,980 (GRCm38)	missense	probably damaging	1.00
R8809:Retreg3	UTSW	11	101,102,026 (GRCm38)	missense	probably damaging	1.00

Posted On

2015-04-16