Incidental Mutation 'IGL02550:Tmf1'
ID 298011
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Tmf1
Ensembl Gene ENSMUSG00000030059
Gene Name TATA element modulatory factor 1
Synonyms LOC232286, 7030402D04Rik
Accession Numbers
Essential gene? Probably non essential (E-score: 0.218) question?
Stock # IGL02550
Quality Score
Status
Chromosome 6
Chromosomal Location 97129958-97156083 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 97135522 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glycine at position 918 (D918G)
Ref Sequence ENSEMBL: ENSMUSP00000093325 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000095664] [ENSMUST00000124173]
AlphaFold B9EKI3
Predicted Effect noncoding transcript
Transcript: ENSMUST00000083794
Predicted Effect probably benign
Transcript: ENSMUST00000095664
AA Change: D918G

PolyPhen 2 Score 0.276 (Sensitivity: 0.91; Specificity: 0.88)
SMART Domains Protein: ENSMUSP00000093325
Gene: ENSMUSG00000030059
AA Change: D918G

DomainStartEndE-ValueType
low complexity region 111 122 N/A INTRINSIC
low complexity region 131 142 N/A INTRINSIC
low complexity region 194 211 N/A INTRINSIC
low complexity region 235 253 N/A INTRINSIC
low complexity region 261 276 N/A INTRINSIC
low complexity region 367 381 N/A INTRINSIC
low complexity region 410 426 N/A INTRINSIC
coiled coil region 443 536 N/A INTRINSIC
Pfam:TMF_DNA_bd 540 613 5e-24 PFAM
low complexity region 697 715 N/A INTRINSIC
low complexity region 719 732 N/A INTRINSIC
low complexity region 803 821 N/A INTRINSIC
coiled coil region 823 894 N/A INTRINSIC
low complexity region 923 937 N/A INTRINSIC
Pfam:TMF_TATA_bd 972 1085 1.5e-35 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000124173
SMART Domains Protein: ENSMUSP00000120093
Gene: ENSMUSG00000030059

DomainStartEndE-ValueType
low complexity region 111 122 N/A INTRINSIC
low complexity region 131 142 N/A INTRINSIC
low complexity region 194 211 N/A INTRINSIC
low complexity region 235 253 N/A INTRINSIC
low complexity region 261 276 N/A INTRINSIC
low complexity region 367 381 N/A INTRINSIC
low complexity region 410 426 N/A INTRINSIC
coiled coil region 443 536 N/A INTRINSIC
Pfam:TMF_DNA_bd 540 613 1.4e-24 PFAM
low complexity region 697 715 N/A INTRINSIC
low complexity region 719 732 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000204190
Coding Region Coverage
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele exhibit male infertility associated with decreased testis weight, globozoospermia, absent acrosome, asthenozoospermia, and abnormal sperm midpiece morphology. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 65 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acadl A G 1: 66,884,325 (GRCm39) probably null Het
Acer3 G A 7: 97,873,185 (GRCm39) T171I probably benign Het
Acsm2 C T 7: 119,172,507 (GRCm39) P117S probably damaging Het
Anxa2 A G 9: 69,374,588 (GRCm39) S22G probably benign Het
Arrb2 T C 11: 70,327,696 (GRCm39) I120T probably damaging Het
Atp11a G T 8: 12,866,997 (GRCm39) K141N possibly damaging Het
Casd1 T C 6: 4,642,009 (GRCm39) V762A probably benign Het
Ccdc61 A T 7: 18,627,227 (GRCm39) S48T probably benign Het
Cntn2 T C 1: 132,456,801 (GRCm39) M82V probably null Het
Cobll1 A G 2: 64,938,207 (GRCm39) S359P probably damaging Het
Ctnnbl1 C A 2: 157,726,055 (GRCm39) D465E probably benign Het
Def6 A T 17: 28,447,235 (GRCm39) E622V probably benign Het
Dmgdh T C 13: 93,854,083 (GRCm39) Y678H probably damaging Het
Dock9 A T 14: 121,935,724 (GRCm39) M1K probably null Het
Esyt1 T C 10: 128,357,962 (GRCm39) K216E probably damaging Het
Fhod3 A G 18: 25,156,017 (GRCm39) D545G probably benign Het
Galnt12 A T 4: 47,104,126 (GRCm39) D128V possibly damaging Het
Gm1110 C T 9: 26,793,130 (GRCm39) V549I probably benign Het
Gm7361 A G 5: 26,466,120 (GRCm39) I161V possibly damaging Het
Gsn T C 2: 35,172,619 (GRCm39) probably benign Het
Gvin3 A T 7: 106,200,846 (GRCm39) noncoding transcript Het
Il16 T A 7: 83,323,704 (GRCm39) Q282L possibly damaging Het
Il3ra A G 14: 14,348,055 (GRCm38) D67G probably benign Het
Insrr T C 3: 87,711,805 (GRCm39) L515P probably damaging Het
Jhy A G 9: 40,828,466 (GRCm39) F480S probably benign Het
Klc4 C A 17: 46,947,836 (GRCm39) probably null Het
Klhl12 G T 1: 134,395,443 (GRCm39) C135F possibly damaging Het
Ly6m T G 15: 74,752,604 (GRCm39) H24P probably damaging Het
Mboat7 G T 7: 3,686,905 (GRCm39) probably null Het
Myo1f G A 17: 33,807,116 (GRCm39) D522N probably damaging Het
Myo1f A G 17: 33,799,124 (GRCm39) probably benign Het
Nbea C A 3: 55,926,835 (GRCm39) M789I probably damaging Het
Ncapd2 T C 6: 125,154,410 (GRCm39) D602G probably benign Het
Ncaph2 A T 15: 89,254,064 (GRCm39) K344* probably null Het
Nek2 A G 1: 191,554,371 (GRCm39) Y70C probably damaging Het
Or2t1 T C 14: 14,328,423 (GRCm38) L104P possibly damaging Het
Or4k35 T A 2: 111,100,349 (GRCm39) D121V probably damaging Het
Or4k37 T C 2: 111,158,845 (GRCm39) L27P probably damaging Het
Or5ak22 G A 2: 85,230,166 (GRCm39) A237V probably damaging Het
Or7e166 C A 9: 19,624,343 (GRCm39) F73L possibly damaging Het
Or8g35 T A 9: 39,381,842 (GRCm39) Y60F probably benign Het
Plcb3 T A 19: 6,937,544 (GRCm39) K625* probably null Het
Plrg1 T C 3: 82,968,430 (GRCm39) probably null Het
Ptpn12 A G 5: 21,203,137 (GRCm39) V547A probably benign Het
Ralgapb A G 2: 158,290,331 (GRCm39) D748G probably damaging Het
Rcbtb2 A G 14: 73,399,459 (GRCm39) E41G probably damaging Het
Rela G T 19: 5,691,534 (GRCm39) R236L possibly damaging Het
Rps6kc1 A G 1: 190,604,059 (GRCm39) S188P probably damaging Het
Sipa1l1 A T 12: 82,487,723 (GRCm39) K1666* probably null Het
Slco1a1 C T 6: 141,889,191 (GRCm39) M40I probably benign Het
Smarca4 C A 9: 21,597,418 (GRCm39) P1391Q probably benign Het
Stra6 A G 9: 58,057,366 (GRCm39) N392S possibly damaging Het
Syt4 A G 18: 31,577,246 (GRCm39) I36T probably damaging Het
Tgfbr2 A T 9: 115,939,197 (GRCm39) M235K probably benign Het
Tmem87a T A 2: 120,204,966 (GRCm39) probably null Het
Tnfaip2 A G 12: 111,412,535 (GRCm39) Y312C probably damaging Het
Usp47 C T 7: 111,703,561 (GRCm39) R1178C probably damaging Het
Vmn2r95 T A 17: 18,671,994 (GRCm39) I577N probably damaging Het
Vps13b T C 15: 35,572,242 (GRCm39) V953A probably benign Het
Wasl A G 6: 24,633,883 (GRCm39) F127S probably damaging Het
Wdr1 C T 5: 38,698,206 (GRCm39) V192I probably damaging Het
Wnt9a C T 11: 59,221,744 (GRCm39) T214I probably damaging Het
Xpo5 A G 17: 46,540,255 (GRCm39) D693G probably benign Het
Zan A G 5: 137,385,301 (GRCm39) L5044P unknown Het
Zhx3 T C 2: 160,623,216 (GRCm39) N317S probably damaging Het
Other mutations in Tmf1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00661:Tmf1 APN 6 97,153,455 (GRCm39) missense probably benign 0.00
IGL00846:Tmf1 APN 6 97,150,277 (GRCm39) missense possibly damaging 0.88
IGL01575:Tmf1 APN 6 97,152,897 (GRCm39) missense probably damaging 1.00
IGL01922:Tmf1 APN 6 97,153,891 (GRCm39) missense probably benign 0.00
IGL02675:Tmf1 APN 6 97,141,003 (GRCm39) splice site probably benign
IGL02985:Tmf1 APN 6 97,153,770 (GRCm39) missense probably damaging 1.00
IGL03324:Tmf1 APN 6 97,140,614 (GRCm39) missense probably damaging 0.99
caddy UTSW 6 97,138,408 (GRCm39) nonsense probably null
R0028:Tmf1 UTSW 6 97,135,059 (GRCm39) missense probably damaging 1.00
R0153:Tmf1 UTSW 6 97,147,345 (GRCm39) missense probably damaging 0.97
R0325:Tmf1 UTSW 6 97,153,465 (GRCm39) missense possibly damaging 0.51
R0420:Tmf1 UTSW 6 97,153,102 (GRCm39) missense probably damaging 1.00
R0730:Tmf1 UTSW 6 97,153,453 (GRCm39) missense probably benign
R0825:Tmf1 UTSW 6 97,152,956 (GRCm39) missense probably benign
R0827:Tmf1 UTSW 6 97,135,011 (GRCm39) nonsense probably null
R0839:Tmf1 UTSW 6 97,153,284 (GRCm39) missense probably damaging 1.00
R1078:Tmf1 UTSW 6 97,150,261 (GRCm39) missense probably damaging 1.00
R1905:Tmf1 UTSW 6 97,138,440 (GRCm39) missense possibly damaging 0.53
R2274:Tmf1 UTSW 6 97,140,547 (GRCm39) missense probably damaging 1.00
R3701:Tmf1 UTSW 6 97,149,292 (GRCm39) missense possibly damaging 0.51
R3953:Tmf1 UTSW 6 97,153,167 (GRCm39) missense probably damaging 0.99
R3955:Tmf1 UTSW 6 97,153,167 (GRCm39) missense probably damaging 0.99
R4398:Tmf1 UTSW 6 97,155,857 (GRCm39) missense probably damaging 0.99
R4416:Tmf1 UTSW 6 97,155,949 (GRCm39) missense probably damaging 1.00
R4497:Tmf1 UTSW 6 97,149,293 (GRCm39) missense probably benign 0.00
R4592:Tmf1 UTSW 6 97,150,361 (GRCm39) missense probably benign 0.00
R4669:Tmf1 UTSW 6 97,147,388 (GRCm39) missense probably benign 0.00
R5214:Tmf1 UTSW 6 97,144,253 (GRCm39) missense possibly damaging 0.81
R5352:Tmf1 UTSW 6 97,153,770 (GRCm39) missense probably damaging 1.00
R5530:Tmf1 UTSW 6 97,135,048 (GRCm39) missense probably damaging 1.00
R5815:Tmf1 UTSW 6 97,150,364 (GRCm39) missense probably benign 0.28
R6806:Tmf1 UTSW 6 97,138,408 (GRCm39) nonsense probably null
R6837:Tmf1 UTSW 6 97,153,542 (GRCm39) missense possibly damaging 0.76
R6853:Tmf1 UTSW 6 97,145,810 (GRCm39) missense probably damaging 0.99
R6887:Tmf1 UTSW 6 97,153,799 (GRCm39) missense probably damaging 1.00
R7058:Tmf1 UTSW 6 97,133,911 (GRCm39) missense probably damaging 1.00
R7145:Tmf1 UTSW 6 97,153,079 (GRCm39) missense probably damaging 1.00
R7340:Tmf1 UTSW 6 97,145,061 (GRCm39) missense possibly damaging 0.81
R7573:Tmf1 UTSW 6 97,135,455 (GRCm39) missense probably benign 0.14
R7809:Tmf1 UTSW 6 97,138,420 (GRCm39) missense probably damaging 0.99
R7833:Tmf1 UTSW 6 97,138,372 (GRCm39) missense probably benign 0.06
R8728:Tmf1 UTSW 6 97,133,821 (GRCm39) missense probably damaging 1.00
R9004:Tmf1 UTSW 6 97,152,738 (GRCm39) missense probably benign 0.14
R9425:Tmf1 UTSW 6 97,149,293 (GRCm39) missense probably benign 0.00
R9436:Tmf1 UTSW 6 97,153,617 (GRCm39) missense probably benign 0.05
R9454:Tmf1 UTSW 6 97,155,866 (GRCm39) missense probably benign 0.00
R9458:Tmf1 UTSW 6 97,153,382 (GRCm39) missense probably benign 0.00
R9490:Tmf1 UTSW 6 97,137,227 (GRCm39) missense probably benign 0.00
R9544:Tmf1 UTSW 6 97,147,293 (GRCm39) missense possibly damaging 0.92
R9558:Tmf1 UTSW 6 97,147,293 (GRCm39) missense possibly damaging 0.92
R9560:Tmf1 UTSW 6 97,147,293 (GRCm39) missense possibly damaging 0.92
R9595:Tmf1 UTSW 6 97,135,457 (GRCm39) missense probably damaging 0.99
Posted On 2015-04-16