Incidental Mutation 'IGL02558:Plxdc2'
ID 298406
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Plxdc2
Ensembl Gene ENSMUSG00000026748
Gene Name plexin domain containing 2
Synonyms 1200007L24Rik, Tem7r, 5430431D22Rik
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # IGL02558
Quality Score
Status
Chromosome 2
Chromosomal Location 16361115-16760650 bp(+) (GRCm39)
Type of Mutation splice site
DNA Base Change (assembly) A to G at 16674409 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000110351 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000028081] [ENSMUST00000114702] [ENSMUST00000114703]
AlphaFold Q9DC11
Predicted Effect probably benign
Transcript: ENSMUST00000028081
SMART Domains Protein: ENSMUSP00000028081
Gene: ENSMUSG00000026748

DomainStartEndE-ValueType
signal peptide 1 30 N/A INTRINSIC
PSI 327 372 1.52e-3 SMART
low complexity region 390 401 N/A INTRINSIC
transmembrane domain 455 477 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000114702
SMART Domains Protein: ENSMUSP00000110350
Gene: ENSMUSG00000026748

DomainStartEndE-ValueType
signal peptide 1 30 N/A INTRINSIC
PSI 327 372 1.52e-3 SMART
low complexity region 388 399 N/A INTRINSIC
transmembrane domain 453 475 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000114703
SMART Domains Protein: ENSMUSP00000110351
Gene: ENSMUSG00000026748

DomainStartEndE-ValueType
signal peptide 1 30 N/A INTRINSIC
PSI 278 323 1.52e-3 SMART
low complexity region 339 350 N/A INTRINSIC
transmembrane domain 404 426 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000126173
Coding Region Coverage
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for a hypomorphic reporter allele are viable and behaviorally normal with no apparent abnormalities in the developing and mature nervous system. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 41 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700109H08Rik A C 5: 3,632,194 (GRCm39) *25C probably null Het
Abca13 T C 11: 9,349,387 (GRCm39) Y3654H probably damaging Het
Ankle1 T C 8: 71,861,636 (GRCm39) F438S probably damaging Het
Atp10a A T 7: 58,469,390 (GRCm39) R1080S probably damaging Het
Ccdc51 A T 9: 108,921,252 (GRCm39) N380Y probably damaging Het
Ccr8 A T 9: 119,923,724 (GRCm39) I280F probably benign Het
Cdc45 C T 16: 18,617,479 (GRCm39) M200I probably benign Het
Cep162 T C 9: 87,107,786 (GRCm39) T535A probably benign Het
Cep162 G T 9: 87,107,779 (GRCm39) T537N probably benign Het
Cfap52 T C 11: 67,844,964 (GRCm39) D35G probably benign Het
Cmip G A 8: 118,175,827 (GRCm39) S530N probably damaging Het
Col9a3 A T 2: 180,248,599 (GRCm39) probably null Het
Csf3r T C 4: 125,931,928 (GRCm39) probably benign Het
Csk C T 9: 57,537,546 (GRCm39) E123K probably benign Het
Csrnp3 G A 2: 65,852,573 (GRCm39) E322K probably damaging Het
Ddx11 A T 17: 66,455,667 (GRCm39) I663F probably damaging Het
Dnah1 T A 14: 30,996,336 (GRCm39) M2667L possibly damaging Het
Foxred1 T C 9: 35,121,429 (GRCm39) K40E probably damaging Het
Gata2 C T 6: 88,176,762 (GRCm39) P74S probably benign Het
Gdf10 T G 14: 33,645,937 (GRCm39) C29G probably benign Het
Hectd4 A G 5: 121,482,848 (GRCm39) E3133G probably benign Het
Ints8 G A 4: 11,218,771 (GRCm39) R784W probably damaging Het
Lrriq1 T C 10: 102,982,144 (GRCm39) E1392G probably damaging Het
Muc19 T C 15: 91,781,816 (GRCm39) noncoding transcript Het
Myom2 A T 8: 15,164,237 (GRCm39) D1044V probably benign Het
Nphp4 G T 4: 152,639,988 (GRCm39) R958L probably damaging Het
Nup205 C T 6: 35,166,859 (GRCm39) P293S probably damaging Het
Or10ag60 T C 2: 87,437,903 (GRCm39) I57T probably benign Het
Or1e17 A T 11: 73,831,651 (GRCm39) H193L probably benign Het
Pwp2 T C 10: 78,014,899 (GRCm39) S362G probably damaging Het
Siglec1 G T 2: 130,916,915 (GRCm39) S1113R possibly damaging Het
Sirpa A G 2: 129,471,989 (GRCm39) E472G probably damaging Het
Slc39a4 G T 15: 76,498,403 (GRCm39) L345M probably damaging Het
Snx27 C T 3: 94,410,188 (GRCm39) R496Q probably damaging Het
Stard9 A G 2: 120,527,388 (GRCm39) H1215R possibly damaging Het
Stau1 A G 2: 166,792,768 (GRCm39) Y371H probably benign Het
Sult2a1 A C 7: 13,566,520 (GRCm39) W152G probably benign Het
Syt16 A T 12: 74,281,832 (GRCm39) K319* probably null Het
Tcf7 T A 11: 52,144,797 (GRCm39) probably benign Het
Tfdp1 A G 8: 13,419,546 (GRCm39) N92D possibly damaging Het
Zfp13 C T 17: 23,795,072 (GRCm39) A493T probably benign Het
Other mutations in Plxdc2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01420:Plxdc2 APN 2 16,654,950 (GRCm39) missense probably damaging 1.00
IGL01700:Plxdc2 APN 2 16,516,926 (GRCm39) missense probably benign 0.00
IGL02306:Plxdc2 APN 2 16,665,585 (GRCm39) missense probably benign 0.06
IGL02555:Plxdc2 APN 2 16,734,152 (GRCm39) missense probably benign 0.02
IGL03031:Plxdc2 APN 2 16,655,043 (GRCm39) splice site probably null
IGL03114:Plxdc2 APN 2 16,654,935 (GRCm39) missense probably damaging 1.00
R1024:Plxdc2 UTSW 2 16,716,917 (GRCm39) missense probably benign 0.00
R1449:Plxdc2 UTSW 2 16,665,592 (GRCm39) missense possibly damaging 0.82
R1840:Plxdc2 UTSW 2 16,674,667 (GRCm39) missense probably benign 0.11
R2091:Plxdc2 UTSW 2 16,718,494 (GRCm39) missense probably damaging 1.00
R2129:Plxdc2 UTSW 2 16,516,902 (GRCm39) missense probably benign
R2192:Plxdc2 UTSW 2 16,570,147 (GRCm39) missense probably damaging 0.99
R2287:Plxdc2 UTSW 2 16,517,001 (GRCm39) missense probably benign 0.00
R2567:Plxdc2 UTSW 2 16,716,995 (GRCm39) missense probably benign 0.00
R3964:Plxdc2 UTSW 2 16,665,651 (GRCm39) missense probably damaging 0.98
R4167:Plxdc2 UTSW 2 16,570,196 (GRCm39) missense probably damaging 0.99
R4496:Plxdc2 UTSW 2 16,517,040 (GRCm39) missense probably damaging 1.00
R4876:Plxdc2 UTSW 2 16,708,129 (GRCm39) missense probably damaging 1.00
R4891:Plxdc2 UTSW 2 16,716,957 (GRCm39) missense probably benign
R5238:Plxdc2 UTSW 2 16,655,026 (GRCm39) missense probably damaging 1.00
R5389:Plxdc2 UTSW 2 16,654,998 (GRCm39) missense probably damaging 1.00
R5984:Plxdc2 UTSW 2 16,665,666 (GRCm39) missense probably benign 0.28
R6675:Plxdc2 UTSW 2 16,716,932 (GRCm39) missense probably benign
R6751:Plxdc2 UTSW 2 16,552,952 (GRCm39) missense probably benign 0.14
R7676:Plxdc2 UTSW 2 16,716,894 (GRCm39) missense probably benign 0.01
R7757:Plxdc2 UTSW 2 16,734,187 (GRCm39) missense probably benign 0.37
R7813:Plxdc2 UTSW 2 16,665,678 (GRCm39) missense possibly damaging 0.56
R7919:Plxdc2 UTSW 2 16,553,036 (GRCm39) missense probably damaging 0.98
R9783:Plxdc2 UTSW 2 16,674,349 (GRCm39) nonsense probably null
Z1176:Plxdc2 UTSW 2 16,570,214 (GRCm39) missense possibly damaging 0.82
Posted On 2015-04-16