Incidental Mutation 'IGL02627:Vmn1r30'
ID 301150
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Vmn1r30
Ensembl Gene ENSMUSG00000095670
Gene Name vomeronasal 1 receptor 30
Synonyms V1rc22, V1rc9
Accession Numbers
Essential gene? Probably non essential (E-score: 0.073) question?
Stock # IGL02627
Quality Score
Status
Chromosome 6
Chromosomal Location 58411833-58420609 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 58412746 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Serine at position 29 (T29S)
Ref Sequence ENSEMBL: ENSMUSP00000154098 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000078890] [ENSMUST00000226334] [ENSMUST00000227466] [ENSMUST00000228577] [ENSMUST00000228635]
AlphaFold Q8R2D2
Predicted Effect probably benign
Transcript: ENSMUST00000078890
AA Change: T29S

PolyPhen 2 Score 0.082 (Sensitivity: 0.93; Specificity: 0.85)
SMART Domains Protein: ENSMUSP00000087336
Gene: ENSMUSG00000095670
AA Change: T29S

DomainStartEndE-ValueType
Pfam:V1R 29 293 4.8e-53 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000203463
Predicted Effect probably benign
Transcript: ENSMUST00000226334
AA Change: T29S

PolyPhen 2 Score 0.082 (Sensitivity: 0.93; Specificity: 0.85)
Predicted Effect probably benign
Transcript: ENSMUST00000227466
AA Change: T29S

PolyPhen 2 Score 0.082 (Sensitivity: 0.93; Specificity: 0.85)
Predicted Effect probably benign
Transcript: ENSMUST00000228577
AA Change: T29S

PolyPhen 2 Score 0.082 (Sensitivity: 0.93; Specificity: 0.85)
Predicted Effect probably benign
Transcript: ENSMUST00000228635
AA Change: T29S

PolyPhen 2 Score 0.082 (Sensitivity: 0.93; Specificity: 0.85)
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 28 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700001O22Rik T A 2: 30,685,777 (GRCm39) K353M probably damaging Het
Arhgap32 T C 9: 32,157,302 (GRCm39) Y100H probably damaging Het
Cdc45 C T 16: 18,617,479 (GRCm39) M200I probably benign Het
Cfap418 G A 4: 10,898,039 (GRCm39) C207Y probably damaging Het
Ckap5 A T 2: 91,406,366 (GRCm39) N752I probably damaging Het
Dgkz T A 2: 91,769,055 (GRCm39) probably benign Het
Egfr T A 11: 16,819,346 (GRCm39) V292E probably damaging Het
Gnb3 T C 6: 124,811,678 (GRCm39) T329A probably damaging Het
Igkv3-2 A T 6: 70,675,810 (GRCm39) T40S probably damaging Het
Kcnq2 T C 2: 180,724,120 (GRCm39) probably benign Het
Mbip T C 12: 56,382,590 (GRCm39) Q292R probably benign Het
Mgat5b T C 11: 116,874,442 (GRCm39) Y625H probably damaging Het
Ms4a4d A T 19: 11,525,987 (GRCm39) E40D probably damaging Het
Naip1 T C 13: 100,562,156 (GRCm39) E1003G possibly damaging Het
Ncf2 G A 1: 152,686,759 (GRCm39) probably benign Het
Nfkbiz A G 16: 55,636,714 (GRCm39) V529A probably damaging Het
Osr2 A G 15: 35,300,600 (GRCm39) N52S possibly damaging Het
Prag1 A G 8: 36,606,593 (GRCm39) D778G possibly damaging Het
Rsl1d1 G T 16: 11,012,415 (GRCm39) A337E possibly damaging Het
Sall3 A T 18: 81,015,576 (GRCm39) L784Q possibly damaging Het
Spen A G 4: 141,200,326 (GRCm39) I2744T probably damaging Het
Tfip11 A C 5: 112,477,679 (GRCm39) S145R possibly damaging Het
Tonsl T C 15: 76,518,295 (GRCm39) D559G probably damaging Het
Trmt5 A T 12: 73,328,229 (GRCm39) S325T probably damaging Het
Ubr1 A T 2: 120,771,472 (GRCm39) V472D probably damaging Het
Vps29 T C 5: 122,500,908 (GRCm39) S158P probably benign Het
Wdr82 T C 9: 106,053,886 (GRCm39) V79A possibly damaging Het
Wfdc16 T A 2: 164,480,383 (GRCm39) E37D possibly damaging Het
Other mutations in Vmn1r30
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01657:Vmn1r30 APN 6 58,412,619 (GRCm39) missense probably benign 0.01
IGL02432:Vmn1r30 APN 6 58,412,655 (GRCm39) missense probably benign 0.04
IGL02870:Vmn1r30 APN 6 58,412,355 (GRCm39) missense probably benign 0.01
R0360:Vmn1r30 UTSW 6 58,412,262 (GRCm39) missense probably benign 0.03
R1071:Vmn1r30 UTSW 6 58,412,813 (GRCm39) missense possibly damaging 0.93
R1335:Vmn1r30 UTSW 6 58,412,080 (GRCm39) missense probably damaging 1.00
R1888:Vmn1r30 UTSW 6 58,412,475 (GRCm39) missense possibly damaging 0.93
R1888:Vmn1r30 UTSW 6 58,412,475 (GRCm39) missense possibly damaging 0.93
R2483:Vmn1r30 UTSW 6 58,412,437 (GRCm39) missense probably benign 0.02
R3622:Vmn1r30 UTSW 6 58,412,437 (GRCm39) missense probably benign 0.02
R3623:Vmn1r30 UTSW 6 58,412,437 (GRCm39) missense probably benign 0.02
R3624:Vmn1r30 UTSW 6 58,412,437 (GRCm39) missense probably benign 0.02
R3744:Vmn1r30 UTSW 6 58,412,804 (GRCm39) nonsense probably null
R3762:Vmn1r30 UTSW 6 58,412,278 (GRCm39) missense probably benign 0.20
R4483:Vmn1r30 UTSW 6 58,412,118 (GRCm39) missense probably damaging 1.00
R4484:Vmn1r30 UTSW 6 58,412,118 (GRCm39) missense probably damaging 1.00
R5160:Vmn1r30 UTSW 6 58,412,368 (GRCm39) missense probably benign 0.03
R5408:Vmn1r30 UTSW 6 58,412,029 (GRCm39) missense probably benign 0.03
R5461:Vmn1r30 UTSW 6 58,412,759 (GRCm39) nonsense probably null
R5888:Vmn1r30 UTSW 6 58,412,550 (GRCm39) missense possibly damaging 0.94
R7068:Vmn1r30 UTSW 6 58,411,995 (GRCm39) missense possibly damaging 0.94
R7490:Vmn1r30 UTSW 6 58,412,214 (GRCm39) missense possibly damaging 0.80
R7680:Vmn1r30 UTSW 6 58,412,284 (GRCm39) nonsense probably null
R7751:Vmn1r30 UTSW 6 58,412,397 (GRCm39) missense probably benign 0.03
R8516:Vmn1r30 UTSW 6 58,412,109 (GRCm39) missense probably damaging 0.96
R8728:Vmn1r30 UTSW 6 58,412,460 (GRCm39) missense probably benign
R9351:Vmn1r30 UTSW 6 58,412,262 (GRCm39) missense probably benign 0.03
Posted On 2015-04-16