Incidental Mutation 'IGL02636:Vmn1r20'
ID |
301525 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Vmn1r20
|
Ensembl Gene |
ENSMUSG00000115253 |
Gene Name |
vomeronasal 1 receptor 20 |
Synonyms |
Gm5569 |
Accession Numbers |
|
Essential gene? |
Possibly non essential
(E-score: 0.416)
|
Stock # |
IGL02636
|
Quality Score |
|
Status
|
|
Chromosome |
6 |
Chromosomal Location |
57408676-57409587 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
G to T
at 57408746 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Cysteine to Phenylalanine
at position 24
(C24F)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000153815
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000176085]
[ENSMUST00000226808]
[ENSMUST00000227909]
|
AlphaFold |
K7N778 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000176085
AA Change: C24F
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
SMART Domains |
Protein: ENSMUSP00000134973 Gene: ENSMUSG00000093679 AA Change: C24F
Domain | Start | End | E-Value | Type |
Pfam:V1R
|
28 |
293 |
2.3e-51 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000226808
AA Change: C24F
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000227909
AA Change: C24F
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
Coding Region Coverage |
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 32 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Alms1 |
C |
A |
6: 85,605,636 (GRCm39) |
Q1960K |
probably benign |
Het |
Arhgef40 |
T |
A |
14: 52,234,865 (GRCm39) |
V1056E |
probably damaging |
Het |
Cdh26 |
T |
A |
2: 178,091,755 (GRCm39) |
F105I |
probably damaging |
Het |
Cep162 |
A |
T |
9: 87,130,432 (GRCm39) |
D59E |
possibly damaging |
Het |
Cngb3 |
A |
T |
4: 19,396,690 (GRCm39) |
T348S |
probably damaging |
Het |
Eci3 |
A |
T |
13: 35,130,963 (GRCm39) |
|
probably null |
Het |
Gapvd1 |
A |
G |
2: 34,615,416 (GRCm39) |
I409T |
probably benign |
Het |
Golga2 |
T |
C |
2: 32,186,735 (GRCm39) |
|
probably null |
Het |
Hoxd3 |
G |
A |
2: 74,577,298 (GRCm39) |
A393T |
probably benign |
Het |
Htr5a |
T |
C |
5: 28,047,658 (GRCm39) |
F71S |
probably damaging |
Het |
Hyou1 |
T |
C |
9: 44,292,707 (GRCm39) |
|
probably null |
Het |
Igsf6 |
C |
A |
7: 120,666,503 (GRCm39) |
|
probably benign |
Het |
Klrb1c |
C |
A |
6: 128,765,515 (GRCm39) |
C25F |
probably benign |
Het |
Lrguk |
C |
A |
6: 34,067,123 (GRCm39) |
T483K |
probably damaging |
Het |
Lrpprc |
A |
T |
17: 85,060,532 (GRCm39) |
|
probably benign |
Het |
Lrrk1 |
A |
T |
7: 65,958,407 (GRCm39) |
|
probably null |
Het |
Megf8 |
G |
A |
7: 25,057,857 (GRCm39) |
G2098D |
probably damaging |
Het |
Nfkbia |
T |
C |
12: 55,537,958 (GRCm39) |
Q165R |
possibly damaging |
Het |
Nipsnap2 |
A |
G |
5: 129,822,354 (GRCm39) |
|
probably benign |
Het |
Phykpl |
C |
T |
11: 51,489,540 (GRCm39) |
T382I |
probably damaging |
Het |
Prdm10 |
A |
G |
9: 31,240,977 (GRCm39) |
D206G |
possibly damaging |
Het |
Rab26 |
T |
C |
17: 24,752,533 (GRCm39) |
S9G |
probably benign |
Het |
Sema3e |
C |
A |
5: 14,275,670 (GRCm39) |
N258K |
probably benign |
Het |
Slfn10-ps |
T |
A |
11: 82,920,971 (GRCm39) |
|
noncoding transcript |
Het |
Tgm5 |
A |
T |
2: 120,907,277 (GRCm39) |
C149S |
probably damaging |
Het |
Timp4 |
C |
T |
6: 115,226,785 (GRCm39) |
|
probably null |
Het |
Traf7 |
T |
C |
17: 24,731,964 (GRCm39) |
K251E |
probably benign |
Het |
Ugcg |
G |
T |
4: 59,207,763 (GRCm39) |
R34L |
possibly damaging |
Het |
Unc13d |
T |
C |
11: 115,964,444 (GRCm39) |
H300R |
probably damaging |
Het |
Vmn2r13 |
T |
C |
5: 109,339,883 (GRCm39) |
R31G |
probably damaging |
Het |
Vsig10l |
A |
G |
7: 43,113,002 (GRCm39) |
T87A |
possibly damaging |
Het |
Zfp353-ps |
T |
A |
8: 42,535,477 (GRCm39) |
|
noncoding transcript |
Het |
|
Other mutations in Vmn1r20 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01761:Vmn1r20
|
APN |
6 |
57,408,725 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02622:Vmn1r20
|
APN |
6 |
57,409,583 (GRCm39) |
missense |
probably damaging |
0.99 |
R0006:Vmn1r20
|
UTSW |
6 |
57,409,290 (GRCm39) |
missense |
probably damaging |
0.99 |
R0079:Vmn1r20
|
UTSW |
6 |
57,408,777 (GRCm39) |
missense |
possibly damaging |
0.70 |
R0200:Vmn1r20
|
UTSW |
6 |
57,409,084 (GRCm39) |
missense |
probably damaging |
0.96 |
R1675:Vmn1r20
|
UTSW |
6 |
57,408,937 (GRCm39) |
missense |
probably benign |
0.00 |
R1734:Vmn1r20
|
UTSW |
6 |
57,409,285 (GRCm39) |
missense |
probably damaging |
1.00 |
R1883:Vmn1r20
|
UTSW |
6 |
57,409,306 (GRCm39) |
missense |
probably benign |
0.14 |
R2049:Vmn1r20
|
UTSW |
6 |
57,408,943 (GRCm39) |
missense |
probably damaging |
1.00 |
R2307:Vmn1r20
|
UTSW |
6 |
57,409,121 (GRCm39) |
missense |
probably benign |
0.03 |
R2346:Vmn1r20
|
UTSW |
6 |
57,408,931 (GRCm39) |
missense |
possibly damaging |
0.83 |
R4405:Vmn1r20
|
UTSW |
6 |
57,409,042 (GRCm39) |
missense |
probably benign |
0.02 |
R4946:Vmn1r20
|
UTSW |
6 |
57,409,159 (GRCm39) |
missense |
probably damaging |
0.98 |
R5259:Vmn1r20
|
UTSW |
6 |
57,409,050 (GRCm39) |
nonsense |
probably null |
|
R5321:Vmn1r20
|
UTSW |
6 |
57,409,427 (GRCm39) |
missense |
probably benign |
0.21 |
R5911:Vmn1r20
|
UTSW |
6 |
57,408,774 (GRCm39) |
missense |
probably benign |
0.16 |
R6042:Vmn1r20
|
UTSW |
6 |
57,409,391 (GRCm39) |
missense |
possibly damaging |
0.90 |
R6298:Vmn1r20
|
UTSW |
6 |
57,409,112 (GRCm39) |
missense |
probably benign |
|
R6314:Vmn1r20
|
UTSW |
6 |
57,409,042 (GRCm39) |
missense |
probably benign |
0.00 |
R6331:Vmn1r20
|
UTSW |
6 |
57,408,655 (GRCm39) |
splice site |
probably null |
|
R6482:Vmn1r20
|
UTSW |
6 |
57,409,093 (GRCm39) |
missense |
probably benign |
0.01 |
R9161:Vmn1r20
|
UTSW |
6 |
57,408,759 (GRCm39) |
missense |
probably benign |
0.00 |
R9165:Vmn1r20
|
UTSW |
6 |
57,409,246 (GRCm39) |
missense |
probably damaging |
0.99 |
|
Posted On |
2015-04-16 |