Incidental Mutation 'IGL02636:Vmn1r20'
ID 301525
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Vmn1r20
Ensembl Gene ENSMUSG00000115253
Gene Name vomeronasal 1 receptor 20
Synonyms Gm5569
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.416) question?
Stock # IGL02636
Quality Score
Status
Chromosome 6
Chromosomal Location 57408676-57409587 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to T at 57408746 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Cysteine to Phenylalanine at position 24 (C24F)
Ref Sequence ENSEMBL: ENSMUSP00000153815 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000176085] [ENSMUST00000226808] [ENSMUST00000227909]
AlphaFold K7N778
Predicted Effect probably benign
Transcript: ENSMUST00000176085
AA Change: C24F

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000134973
Gene: ENSMUSG00000093679
AA Change: C24F

DomainStartEndE-ValueType
Pfam:V1R 28 293 2.3e-51 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000226808
AA Change: C24F

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
Predicted Effect probably benign
Transcript: ENSMUST00000227909
AA Change: C24F

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 32 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Alms1 C A 6: 85,605,636 (GRCm39) Q1960K probably benign Het
Arhgef40 T A 14: 52,234,865 (GRCm39) V1056E probably damaging Het
Cdh26 T A 2: 178,091,755 (GRCm39) F105I probably damaging Het
Cep162 A T 9: 87,130,432 (GRCm39) D59E possibly damaging Het
Cngb3 A T 4: 19,396,690 (GRCm39) T348S probably damaging Het
Eci3 A T 13: 35,130,963 (GRCm39) probably null Het
Gapvd1 A G 2: 34,615,416 (GRCm39) I409T probably benign Het
Golga2 T C 2: 32,186,735 (GRCm39) probably null Het
Hoxd3 G A 2: 74,577,298 (GRCm39) A393T probably benign Het
Htr5a T C 5: 28,047,658 (GRCm39) F71S probably damaging Het
Hyou1 T C 9: 44,292,707 (GRCm39) probably null Het
Igsf6 C A 7: 120,666,503 (GRCm39) probably benign Het
Klrb1c C A 6: 128,765,515 (GRCm39) C25F probably benign Het
Lrguk C A 6: 34,067,123 (GRCm39) T483K probably damaging Het
Lrpprc A T 17: 85,060,532 (GRCm39) probably benign Het
Lrrk1 A T 7: 65,958,407 (GRCm39) probably null Het
Megf8 G A 7: 25,057,857 (GRCm39) G2098D probably damaging Het
Nfkbia T C 12: 55,537,958 (GRCm39) Q165R possibly damaging Het
Nipsnap2 A G 5: 129,822,354 (GRCm39) probably benign Het
Phykpl C T 11: 51,489,540 (GRCm39) T382I probably damaging Het
Prdm10 A G 9: 31,240,977 (GRCm39) D206G possibly damaging Het
Rab26 T C 17: 24,752,533 (GRCm39) S9G probably benign Het
Sema3e C A 5: 14,275,670 (GRCm39) N258K probably benign Het
Slfn10-ps T A 11: 82,920,971 (GRCm39) noncoding transcript Het
Tgm5 A T 2: 120,907,277 (GRCm39) C149S probably damaging Het
Timp4 C T 6: 115,226,785 (GRCm39) probably null Het
Traf7 T C 17: 24,731,964 (GRCm39) K251E probably benign Het
Ugcg G T 4: 59,207,763 (GRCm39) R34L possibly damaging Het
Unc13d T C 11: 115,964,444 (GRCm39) H300R probably damaging Het
Vmn2r13 T C 5: 109,339,883 (GRCm39) R31G probably damaging Het
Vsig10l A G 7: 43,113,002 (GRCm39) T87A possibly damaging Het
Zfp353-ps T A 8: 42,535,477 (GRCm39) noncoding transcript Het
Other mutations in Vmn1r20
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01761:Vmn1r20 APN 6 57,408,725 (GRCm39) missense probably damaging 1.00
IGL02622:Vmn1r20 APN 6 57,409,583 (GRCm39) missense probably damaging 0.99
R0006:Vmn1r20 UTSW 6 57,409,290 (GRCm39) missense probably damaging 0.99
R0079:Vmn1r20 UTSW 6 57,408,777 (GRCm39) missense possibly damaging 0.70
R0200:Vmn1r20 UTSW 6 57,409,084 (GRCm39) missense probably damaging 0.96
R1675:Vmn1r20 UTSW 6 57,408,937 (GRCm39) missense probably benign 0.00
R1734:Vmn1r20 UTSW 6 57,409,285 (GRCm39) missense probably damaging 1.00
R1883:Vmn1r20 UTSW 6 57,409,306 (GRCm39) missense probably benign 0.14
R2049:Vmn1r20 UTSW 6 57,408,943 (GRCm39) missense probably damaging 1.00
R2307:Vmn1r20 UTSW 6 57,409,121 (GRCm39) missense probably benign 0.03
R2346:Vmn1r20 UTSW 6 57,408,931 (GRCm39) missense possibly damaging 0.83
R4405:Vmn1r20 UTSW 6 57,409,042 (GRCm39) missense probably benign 0.02
R4946:Vmn1r20 UTSW 6 57,409,159 (GRCm39) missense probably damaging 0.98
R5259:Vmn1r20 UTSW 6 57,409,050 (GRCm39) nonsense probably null
R5321:Vmn1r20 UTSW 6 57,409,427 (GRCm39) missense probably benign 0.21
R5911:Vmn1r20 UTSW 6 57,408,774 (GRCm39) missense probably benign 0.16
R6042:Vmn1r20 UTSW 6 57,409,391 (GRCm39) missense possibly damaging 0.90
R6298:Vmn1r20 UTSW 6 57,409,112 (GRCm39) missense probably benign
R6314:Vmn1r20 UTSW 6 57,409,042 (GRCm39) missense probably benign 0.00
R6331:Vmn1r20 UTSW 6 57,408,655 (GRCm39) splice site probably null
R6482:Vmn1r20 UTSW 6 57,409,093 (GRCm39) missense probably benign 0.01
R9161:Vmn1r20 UTSW 6 57,408,759 (GRCm39) missense probably benign 0.00
R9165:Vmn1r20 UTSW 6 57,409,246 (GRCm39) missense probably damaging 0.99
Posted On 2015-04-16