Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02638:Zmat4'

301592

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Zmat4

Ensembl Gene

ENSMUSG00000037492

Gene Name

zinc finger, matrin type 4

Synonyms

9630048M01Rik

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.104) question?

Stock #

IGL02638

Quality Score

Status

Chromosome

Chromosomal Location

24137347-24553133 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 24287389 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Cysteine at position 45 (Y45C)

Ref Sequence

ENSEMBL: ENSMUSP00000121626 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000042352] [ENSMUST00000123412] [ENSMUST00000131410] [ENSMUST00000135747] [ENSMUST00000207301]

AlphaFold

Q8BZ94

Predicted Effect

probably damaging
Transcript: ENSMUST00000042352
AA Change: Y45C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000049430
Gene: ENSMUSG00000037492
AA Change: Y45C

Domain	Start	End	E-Value	Type
ZnF_U1	11	45	8.34e-6	SMART
ZnF_C2H2	14	38	4.99e1	SMART
ZnF_U1	72	106	8.6e-8	SMART
ZnF_C2H2	75	99	1.33e1	SMART
ZnF_U1	142	176	4.37e-9	SMART
ZnF_C2H2	145	169	4.38e1	SMART
ZnF_U1	195	229	3.08e-2	SMART
ZnF_C2H2	198	222	1.62e0	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000123412
AA Change: Y45C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000121626
Gene: ENSMUSG00000037492
AA Change: Y45C

Domain	Start	End	E-Value	Type
ZnF_U1	11	45	8.34e-6	SMART
ZnF_C2H2	14	38	4.99e1	SMART
ZnF_U1	72	106	8.6e-8	SMART
ZnF_C2H2	75	99	1.33e1	SMART
ZnF_U1	142	176	4.37e-9	SMART
ZnF_C2H2	145	169	4.38e1	SMART
ZnF_U1	195	225	5.76e0	SMART
ZnF_C2H2	198	222	1.62e0	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000131410
AA Change: Y45C

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000115719
Gene: ENSMUSG00000037492
AA Change: Y45C

Domain	Start	End	E-Value	Type
ZnF_U1	11	45	8.34e-6	SMART
ZnF_U1	72	96	1.09e1	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000135747
AA Change: Y59C

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000121337
Gene: ENSMUSG00000037492
AA Change: Y59C

Domain	Start	End	E-Value	Type
ZnF_U1	25	59	8.34e-6	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000207301

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 50 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Alkbh3	T	A	2: 93,838,458 (GRCm39)	T38S	probably benign	Het
Btbd8	T	C	5: 107,656,422 (GRCm39)	V895A	possibly damaging	Het
Cdkn2c	A	G	4: 109,522,209 (GRCm39)		probably benign	Het
Clca4b	A	C	3: 144,631,939 (GRCm39)	C189G	probably damaging	Het
Clec4f	T	A	6: 83,629,682 (GRCm39)	N292I	possibly damaging	Het
Dkk3	A	C	7: 111,748,234 (GRCm39)	S123R	probably benign	Het
Dock1	C	T	7: 134,748,209 (GRCm39)	A1557V	probably benign	Het
E130308A19Rik	C	T	4: 59,719,676 (GRCm39)	Q403*	probably null	Het
F5	G	A	1: 164,012,177 (GRCm39)		probably null	Het
Fam98c	T	A	7: 28,852,187 (GRCm39)	D326V	probably damaging	Het
Firrm	G	A	1: 163,786,868 (GRCm39)	Q734*	probably null	Het
Frem2	A	C	3: 53,458,767 (GRCm39)	V2034G	possibly damaging	Het
Galnt2	G	A	8: 124,958,318 (GRCm39)	G18D	probably damaging	Het
Grhl3	T	C	4: 135,284,176 (GRCm39)	E222G	probably benign	Het
Hif3a	A	C	7: 16,778,293 (GRCm39)		probably benign	Het
Ibtk	C	T	9: 85,601,946 (GRCm39)	G755D	probably damaging	Het
Laptm4b	A	G	15: 34,277,630 (GRCm39)	N187S	probably benign	Het
Lrba	A	G	3: 86,232,380 (GRCm39)	T776A	probably damaging	Het
Matcap2	A	T	9: 22,341,775 (GRCm39)	K149*	probably null	Het
Mfhas1	T	A	8: 36,058,104 (GRCm39)	W860R	possibly damaging	Het
Mon2	A	C	10: 122,859,844 (GRCm39)	W811G	probably damaging	Het
Nup42	A	G	5: 24,380,505 (GRCm39)	T167A	probably benign	Het
Or10j2	A	G	1: 173,097,898 (GRCm39)	D52G	probably benign	Het
Or2z2	C	A	11: 58,345,873 (GRCm39)	A301S	probably damaging	Het
Or4k45	T	C	2: 111,395,249 (GRCm39)	D180G	probably damaging	Het
Or5w10	T	C	2: 87,375,093 (GRCm39)	Y265C	probably damaging	Het
Or8j3c	T	C	2: 86,254,021 (GRCm39)		probably null	Het
Pgap2	T	C	7: 101,886,629 (GRCm39)	L217P	probably damaging	Het
Pik3c2b	T	G	1: 133,005,056 (GRCm39)		probably benign	Het
Ppfia3	T	A	7: 45,006,092 (GRCm39)	D149V	probably damaging	Het
Prkcb	C	T	7: 122,200,063 (GRCm39)		probably benign	Het
Prl	A	G	13: 27,245,562 (GRCm39)	D97G	probably benign	Het
Psma5-ps	T	C	10: 85,149,698 (GRCm39)		noncoding transcript	Het
Rnf112	T	C	11: 61,340,231 (GRCm39)		probably benign	Het
Slc17a8	C	A	10: 89,412,465 (GRCm39)	G323*	probably null	Het
Snx19	T	C	9: 30,343,660 (GRCm39)	F607L	possibly damaging	Het
Suco	A	G	1: 161,655,256 (GRCm39)	S1079P	probably damaging	Het
Taf5	T	C	19: 47,056,649 (GRCm39)	L149P	probably benign	Het
Taf6l	T	C	19: 8,752,630 (GRCm39)	M379V	probably benign	Het
Tcf25	T	C	8: 124,126,031 (GRCm39)	F558L	probably damaging	Het
Tlcd1	T	C	11: 78,070,444 (GRCm39)	V102A	probably benign	Het
Tmc5	G	T	7: 118,226,456 (GRCm39)	A274S	probably benign	Het
Toporsl	C	T	4: 52,611,624 (GRCm39)	H506Y	probably benign	Het
Ubtd1	T	C	19: 42,022,109 (GRCm39)	L127P	possibly damaging	Het
Usp24	A	C	4: 106,295,967 (GRCm39)		probably benign	Het
Usp24	C	A	4: 106,295,969 (GRCm39)		probably benign	Het
Usp43	T	G	11: 67,746,581 (GRCm39)	D1042A	probably benign	Het
Whrn	T	C	4: 63,337,709 (GRCm39)	T48A	possibly damaging	Het
Wnt2b	A	G	3: 104,862,032 (GRCm39)	I102T	probably benign	Het
Zfp763	T	C	17: 33,238,908 (GRCm39)	D79G	probably benign	Het

Other mutations in Zmat4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01317:Zmat4	APN	8	24,392,185 (GRCm39)	missense	probably benign	0.00
IGL01678:Zmat4	APN	8	24,392,064 (GRCm39)	missense	probably damaging	1.00
IGL02528:Zmat4	APN	8	24,505,212 (GRCm39)	missense	probably damaging	0.99
IGL03203:Zmat4	APN	8	24,505,200 (GRCm39)	missense	probably damaging	0.99
R0208:Zmat4	UTSW	8	24,392,083 (GRCm39)	missense	probably damaging	1.00
R0884:Zmat4	UTSW	8	24,505,143 (GRCm39)	missense	probably benign	0.00
R1856:Zmat4	UTSW	8	24,419,151 (GRCm39)	missense	probably benign	0.41
R1888:Zmat4	UTSW	8	24,505,177 (GRCm39)	missense	probably damaging	0.99
R1888:Zmat4	UTSW	8	24,505,177 (GRCm39)	missense	probably damaging	0.99
R2166:Zmat4	UTSW	8	24,392,152 (GRCm39)	missense	probably damaging	1.00
R3704:Zmat4	UTSW	8	24,287,430 (GRCm39)	missense	probably benign	0.18
R4966:Zmat4	UTSW	8	24,392,085 (GRCm39)	missense	probably damaging	1.00
R5063:Zmat4	UTSW	8	24,238,457 (GRCm39)	missense	probably damaging	0.97
R5536:Zmat4	UTSW	8	24,238,508 (GRCm39)	missense	probably damaging	1.00
R5990:Zmat4	UTSW	8	24,419,279 (GRCm39)	missense	probably damaging	1.00
R6191:Zmat4	UTSW	8	24,392,083 (GRCm39)	missense	probably damaging	1.00
R6645:Zmat4	UTSW	8	24,287,417 (GRCm39)	splice site	probably null
R6962:Zmat4	UTSW	8	24,392,181 (GRCm39)	missense	probably benign	0.00
R7944:Zmat4	UTSW	8	24,238,436 (GRCm39)	missense	possibly damaging	0.95
R7945:Zmat4	UTSW	8	24,238,436 (GRCm39)	missense	possibly damaging	0.95
R8536:Zmat4	UTSW	8	24,238,523 (GRCm39)	critical splice donor site	probably null
R9182:Zmat4	UTSW	8	24,419,226 (GRCm39)	missense	probably damaging	1.00
R9718:Zmat4	UTSW	8	24,238,507 (GRCm39)	missense	probably damaging	1.00

Posted On

2015-04-16