Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02642:Lrfn1'

301753

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Lrfn1

Ensembl Gene

ENSMUSG00000030600

Gene Name

leucine rich repeat and fibronectin type III domain containing 1

Synonyms

SALM2

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.405) question?

Stock #

IGL02642

Quality Score

Status

Chromosome

Chromosomal Location

28151405-28167667 bp(+) (GRCm39)

Type of Mutation

intron

DNA Base Change (assembly)

T to C at 28158113 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000040486 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000040531] [ENSMUST00000055110] [ENSMUST00000108288] [ENSMUST00000189877] [ENSMUST00000190954]

AlphaFold

Q2WF71

Predicted Effect

probably benign
Transcript: ENSMUST00000040531

SMART Domains

Protein: ENSMUSP00000040486
Gene: ENSMUSG00000109336

Domain	Start	End	E-Value	Type
low complexity region	81	90	N/A	INTRINSIC
low complexity region	174	190	N/A	INTRINSIC
low complexity region	200	211	N/A	INTRINSIC
low complexity region	278	290	N/A	INTRINSIC
SAM	296	359	1.02e-9	SMART
low complexity region	406	420	N/A	INTRINSIC
low complexity region	433	461	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000055110
AA Change: F11L

SMART Domains

Protein: ENSMUSP00000057645
Gene: ENSMUSG00000030600
AA Change: F11L

Domain	Start	End	E-Value	Type
low complexity region	2	28	N/A	INTRINSIC
LRR	88	111	8.67e-1	SMART
LRR	112	135	4.57e0	SMART
LRR_TYP	136	159	1.69e-3	SMART
LRR	161	184	2.54e1	SMART
LRR	185	208	2.32e-1	SMART
LRR	209	233	3.75e0	SMART
LRRCT	252	297	1.36e-3	SMART
IGc2	312	377	1.51e-12	SMART
low complexity region	389	403	N/A	INTRINSIC
low complexity region	460	471	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000108288
AA Change: F11L

SMART Domains

Protein: ENSMUSP00000103923
Gene: ENSMUSG00000030600
AA Change: F11L

Domain	Start	End	E-Value	Type
low complexity region	2	28	N/A	INTRINSIC
LRR	88	111	8.67e-1	SMART
LRR	112	135	4.57e0	SMART
LRR_TYP	136	159	1.69e-3	SMART
LRR	161	184	2.54e1	SMART
LRR	185	208	2.32e-1	SMART
LRR	209	233	3.75e0	SMART
LRRCT	252	297	1.36e-3	SMART
IGc2	312	377	1.51e-12	SMART
low complexity region	389	403	N/A	INTRINSIC
FN3	422	502	2.68e-2	SMART
transmembrane domain	535	557	N/A	INTRINSIC
low complexity region	589	601	N/A	INTRINSIC
low complexity region	609	625	N/A	INTRINSIC
low complexity region	716	725	N/A	INTRINSIC
low complexity region	730	747	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000189877
AA Change: F11L

SMART Domains

Protein: ENSMUSP00000139609
Gene: ENSMUSG00000030600
AA Change: F11L

Domain	Start	End	E-Value	Type
low complexity region	2	28	N/A	INTRINSIC
LRR	88	111	8.67e-1	SMART
LRR	112	135	4.57e0	SMART
LRR_TYP	136	159	1.69e-3	SMART
LRR	161	184	2.54e1	SMART
LRR	185	208	2.32e-1	SMART
LRR	209	233	3.75e0	SMART
LRRCT	252	297	1.36e-3	SMART
IGc2	312	377	1.51e-12	SMART
low complexity region	389	403	N/A	INTRINSIC
low complexity region	460	471	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000190954
AA Change: F11L

SMART Domains

Protein: ENSMUSP00000140537
Gene: ENSMUSG00000030600
AA Change: F11L

Domain	Start	End	E-Value	Type
signal peptide	1	31	N/A	INTRINSIC
Blast:LRRNT	33	69	2e-18	BLAST
LRR	88	111	3.7e-3	SMART
LRR	112	135	1.9e-2	SMART
LRR_TYP	136	159	7.1e-6	SMART
LRR	161	184	1.1e-1	SMART
LRR	185	208	1e-3	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000191267

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acadm	T	C	3: 153,644,720 (GRCm39)	D68G	probably damaging	Het
Amer3	A	G	1: 34,625,761 (GRCm39)		probably benign	Het
Ankrd11	A	G	8: 123,617,390 (GRCm39)	L2133P	probably damaging	Het
Bcdin3d	G	T	15: 99,368,673 (GRCm39)	H175Q	probably damaging	Het
Brd8	C	A	18: 34,741,117 (GRCm39)		probably benign	Het
C1rl	C	A	6: 124,470,806 (GRCm39)	T38N	possibly damaging	Het
Cd160	T	C	3: 96,707,927 (GRCm39)	T140A	probably benign	Het
Cdk16	T	G	X: 20,563,167 (GRCm39)	D381E	probably benign	Het
Cpq	G	A	15: 33,381,546 (GRCm39)	G303D	probably damaging	Het
Dmp1	T	C	5: 104,359,536 (GRCm39)	S71P	probably damaging	Het
Enc1	A	C	13: 97,382,042 (GRCm39)	D184A	possibly damaging	Het
Enkur	T	C	2: 21,199,198 (GRCm39)	D112G	probably benign	Het
Esrra	A	T	19: 6,890,218 (GRCm39)	V59E	possibly damaging	Het
F830016B08Rik	A	G	18: 60,433,058 (GRCm39)	N47S	probably benign	Het
Fads1	T	A	19: 10,163,785 (GRCm39)	V189D	probably damaging	Het
Fam167a	T	A	14: 63,689,721 (GRCm39)	I6N	probably damaging	Het
Fam98b	A	G	2: 117,090,793 (GRCm39)	T164A	probably benign	Het
Fhip2a	A	G	19: 57,373,782 (GRCm39)	N681D	possibly damaging	Het
Fryl	T	A	5: 73,252,809 (GRCm39)	I953L	probably benign	Het
Gm10610	T	A	7: 83,198,813 (GRCm39)		noncoding transcript	Het
Grik5	G	T	7: 24,758,408 (GRCm39)	N338K	possibly damaging	Het
Gstt2	A	G	10: 75,668,652 (GRCm39)	I72T	probably benign	Het
Gusb	T	C	5: 130,029,376 (GRCm39)		probably null	Het
Hccs	A	G	X: 168,098,588 (GRCm39)		probably benign	Het
Hoxb4	A	G	11: 96,211,050 (GRCm39)	K217E	probably damaging	Het
Hpd	C	T	5: 123,319,503 (GRCm39)	V22I	possibly damaging	Het
Ighv1-47	A	G	12: 114,954,844 (GRCm39)	Y79H	probably damaging	Het
Il7r	C	A	15: 9,513,133 (GRCm39)		probably benign	Het
Lama1	A	T	17: 68,119,361 (GRCm39)	M2613L	probably benign	Het
Lama2	G	A	10: 27,343,269 (GRCm39)	H68Y	probably damaging	Het
Lce1c	C	A	3: 92,587,845 (GRCm39)		probably benign	Het
Lmx1a	G	T	1: 167,672,192 (GRCm39)		probably benign	Het
Lrriq1	T	A	10: 103,057,322 (GRCm39)		probably null	Het
Mri1	A	T	8: 84,983,702 (GRCm39)	L63Q	probably damaging	Het
Mrps11	G	T	7: 78,438,522 (GRCm39)		probably null	Het
Mtif2	C	A	11: 29,494,395 (GRCm39)	Q666K	probably benign	Het
Mtr	A	T	13: 12,210,118 (GRCm39)		probably benign	Het
Mug1	A	G	6: 121,859,544 (GRCm39)	N1181S	probably benign	Het
Myom1	A	T	17: 71,408,093 (GRCm39)	E1209V	possibly damaging	Het
Nhsl1	A	G	10: 18,284,138 (GRCm39)	I26M	possibly damaging	Het
Nlrp1a	T	A	11: 71,014,358 (GRCm39)	K297N	probably benign	Het
Obox5	T	C	7: 15,491,972 (GRCm39)	V129A	probably benign	Het
Pex16	C	T	2: 92,206,981 (GRCm39)	A53V	probably damaging	Het
Pfpl	T	C	19: 12,407,107 (GRCm39)	F453L	probably damaging	Het
Pip5k1b	G	T	19: 24,323,731 (GRCm39)	H406N	probably benign	Het
Pip5k1c	C	A	10: 81,153,155 (GRCm39)		probably null	Het
Plcxd3	T	C	15: 4,546,122 (GRCm39)	F42S	possibly damaging	Het
Pnpla7	T	C	2: 24,940,288 (GRCm39)	F1056L	probably benign	Het
Rapgef1	T	C	2: 29,590,872 (GRCm39)		probably benign	Het
Rdh11	G	A	12: 79,232,110 (GRCm39)		probably benign	Het
Serac1	A	G	17: 6,096,021 (GRCm39)	F576S	possibly damaging	Het
Slc45a4	A	T	15: 73,458,664 (GRCm39)	M295K	probably benign	Het
Taf1c	T	C	8: 120,325,796 (GRCm39)	T689A	probably benign	Het
Timm10b	G	T	7: 105,317,645 (GRCm39)		probably benign	Het
Tle5	A	T	10: 81,397,126 (GRCm39)	Q34L	possibly damaging	Het
Tnc	A	T	4: 63,883,816 (GRCm39)		probably benign	Het
Toporsl	T	C	4: 52,611,114 (GRCm39)	W336R	probably benign	Het
Usp54	C	A	14: 20,615,140 (GRCm39)		probably benign	Het
Vmn1r233	T	C	17: 21,214,291 (GRCm39)	R220G	probably damaging	Het

Other mutations in Lrfn1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00494:Lrfn1	APN	7	28,159,442 (GRCm39)	missense	probably damaging	1.00
IGL01565:Lrfn1	APN	7	28,158,194 (GRCm39)	missense	probably damaging	1.00
IGL01622:Lrfn1	APN	7	28,166,111 (GRCm39)	missense	probably damaging	1.00
IGL01623:Lrfn1	APN	7	28,166,111 (GRCm39)	missense	probably damaging	1.00
IGL02176:Lrfn1	APN	7	28,158,111 (GRCm39)	intron	probably benign
R1123:Lrfn1	UTSW	7	28,166,544 (GRCm39)	missense	possibly damaging	0.71
R1838:Lrfn1	UTSW	7	28,159,193 (GRCm39)	missense	probably damaging	0.98
R3000:Lrfn1	UTSW	7	28,166,832 (GRCm39)	missense	probably damaging	1.00
R3551:Lrfn1	UTSW	7	28,159,479 (GRCm39)	missense	possibly damaging	0.90
R3905:Lrfn1	UTSW	7	28,166,294 (GRCm39)	missense	possibly damaging	0.49
R4246:Lrfn1	UTSW	7	28,159,367 (GRCm39)	missense	probably benign	0.03
R5621:Lrfn1	UTSW	7	28,166,261 (GRCm39)	missense	probably damaging	1.00
R6267:Lrfn1	UTSW	7	28,159,169 (GRCm39)	missense	probably benign	0.01
R6902:Lrfn1	UTSW	7	28,159,238 (GRCm39)	missense	probably benign	0.10
R7059:Lrfn1	UTSW	7	28,166,355 (GRCm39)	missense	possibly damaging	0.65
R7073:Lrfn1	UTSW	7	28,159,397 (GRCm39)	missense	possibly damaging	0.94
R7208:Lrfn1	UTSW	7	28,166,564 (GRCm39)	missense	probably benign
R7402:Lrfn1	UTSW	7	28,158,947 (GRCm39)	missense	probably damaging	1.00
R8378:Lrfn1	UTSW	7	28,159,157 (GRCm39)	missense	probably benign	0.26
R8791:Lrfn1	UTSW	7	28,159,344 (GRCm39)	missense	probably benign	0.00
R8870:Lrfn1	UTSW	7	28,158,918 (GRCm39)	missense	possibly damaging	0.71
R9452:Lrfn1	UTSW	7	28,159,157 (GRCm39)	missense	probably damaging	1.00
R9483:Lrfn1	UTSW	7	28,158,183 (GRCm39)	missense	probably damaging	1.00
R9579:Lrfn1	UTSW	7	28,166,769 (GRCm39)	missense	probably damaging	1.00
R9649:Lrfn1	UTSW	7	28,166,255 (GRCm39)	missense	probably damaging	1.00
Z1176:Lrfn1	UTSW	7	28,158,540 (GRCm39)	missense	possibly damaging	0.66

Posted On

2015-04-16