Incidental Mutation 'IGL02642:Hpd'
ID301774
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Hpd
Ensembl Gene ENSMUSG00000029445
Gene Name4-hydroxyphenylpyruvic acid dioxygenase
SynonymsLaf, Flp, Fla, Hppd
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.122) question?
Stock #IGL02642
Quality Score
Status
Chromosome5
Chromosomal Location123171807-123182727 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) C to T at 123181440 bp
ZygosityHeterozygous
Amino Acid Change Valine to Isoleucine at position 22 (V22I)
Ref Sequence ENSEMBL: ENSMUSP00000121922 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000031398] [ENSMUST00000154713]
Predicted Effect possibly damaging
Transcript: ENSMUST00000031398
AA Change: V61I

PolyPhen 2 Score 0.629 (Sensitivity: 0.87; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000031398
Gene: ENSMUSG00000029445
AA Change: V61I

DomainStartEndE-ValueType
Pfam:Glyoxalase 18 138 5.6e-10 PFAM
Pfam:Glyoxalase_4 20 134 7.7e-10 PFAM
Pfam:Glyoxalase_2 24 147 4.5e-9 PFAM
Pfam:Glyoxalase 180 335 2.1e-21 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000124110
Predicted Effect possibly damaging
Transcript: ENSMUST00000154713
AA Change: V22I

PolyPhen 2 Score 0.863 (Sensitivity: 0.83; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000121922
Gene: ENSMUSG00000029445
AA Change: V22I

DomainStartEndE-ValueType
SCOP:d1cjxa1 1 122 3e-13 SMART
PDB:1SQI|B 1 159 1e-113 PDB
Predicted Effect noncoding transcript
Transcript: ENSMUST00000156539
Predicted Effect noncoding transcript
Transcript: ENSMUST00000181022
Predicted Effect noncoding transcript
Transcript: ENSMUST00000199260
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is an enzyme in the catabolic pathway of tyrosine. The encoded protein catalyzes the conversion of 4-hydroxyphenylpyruvate to homogentisate. Defects in this gene are a cause of tyrosinemia type 3 (TYRO3) and hawkinsinuria (HAWK). Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2010]
PHENOTYPE: CBA, C3H, DBA/2, SM and AKR have the F.1 form of this soluble liver antigen; A/J, A2G, BALB/c and C57BL/10 the F.2 form. F.2 antigen induces precipitating antibodies in F.1 but not F.2 strains and vice versa. F antigen immune response requires H2 Kk or Ak alleles. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 59 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acadm T C 3: 153,939,083 D68G probably damaging Het
Aes A T 10: 81,561,292 Q34L possibly damaging Het
Amer3 A G 1: 34,586,680 probably benign Het
Ankrd11 A G 8: 122,890,651 L2133P probably damaging Het
Bcdin3d G T 15: 99,470,792 H175Q probably damaging Het
Brd8 C A 18: 34,608,064 probably benign Het
C1rl C A 6: 124,493,847 T38N possibly damaging Het
Cd160 T C 3: 96,800,611 T140A probably benign Het
Cdk16 T G X: 20,696,928 D381E probably benign Het
Cpq G A 15: 33,381,400 G303D probably damaging Het
Dmp1 T C 5: 104,211,670 S71P probably damaging Het
Enc1 A C 13: 97,245,534 D184A possibly damaging Het
Enkur T C 2: 21,194,387 D112G probably benign Het
Esrra A T 19: 6,912,850 V59E possibly damaging Het
F830016B08Rik A G 18: 60,299,986 N47S probably benign Het
Fads1 T A 19: 10,186,421 V189D probably damaging Het
Fam160b1 A G 19: 57,385,350 N681D possibly damaging Het
Fam167a T A 14: 63,452,272 I6N probably damaging Het
Fam98b A G 2: 117,260,312 T164A probably benign Het
Fryl T A 5: 73,095,466 I953L probably benign Het
Gm10610 T A 7: 83,549,605 noncoding transcript Het
Grik5 G T 7: 25,058,983 N338K possibly damaging Het
Gstt2 A G 10: 75,832,818 I72T probably benign Het
Gusb T C 5: 130,000,535 probably null Het
Hccs A G X: 169,315,592 probably benign Het
Hoxb4 A G 11: 96,320,224 K217E probably damaging Het
Ighv1-47 A G 12: 114,991,224 Y79H probably damaging Het
Il7r C A 15: 9,513,047 probably benign Het
Lama1 A T 17: 67,812,366 M2613L probably benign Het
Lama2 G A 10: 27,467,273 H68Y probably damaging Het
Lce1c C A 3: 92,680,538 probably benign Het
Lmx1a G T 1: 167,844,623 probably benign Het
Lrfn1 T C 7: 28,458,688 probably benign Het
Lrriq1 T A 10: 103,221,461 probably null Het
Mri1 A T 8: 84,257,073 L63Q probably damaging Het
Mrps11 G T 7: 78,788,774 probably null Het
Mtif2 C A 11: 29,544,395 Q666K probably benign Het
Mtr A T 13: 12,195,232 probably benign Het
Mug1 A G 6: 121,882,585 N1181S probably benign Het
Myom1 A T 17: 71,101,098 E1209V possibly damaging Het
Nhsl1 A G 10: 18,408,390 I26M possibly damaging Het
Nlrp1a T A 11: 71,123,532 K297N probably benign Het
Obox5 T C 7: 15,758,047 V129A probably benign Het
Pex16 C T 2: 92,376,636 A53V probably damaging Het
Pfpl T C 19: 12,429,743 F453L probably damaging Het
Pip5k1b G T 19: 24,346,367 H406N probably benign Het
Pip5k1c C A 10: 81,317,321 probably null Het
Plcxd3 T C 15: 4,516,640 F42S possibly damaging Het
Pnpla7 T C 2: 25,050,276 F1056L probably benign Het
Rapgef1 T C 2: 29,700,860 probably benign Het
Rdh11 G A 12: 79,185,336 probably benign Het
Serac1 A G 17: 6,045,746 F576S possibly damaging Het
Slc45a4 A T 15: 73,586,815 M295K probably benign Het
Taf1c T C 8: 119,599,057 T689A probably benign Het
Timm10b G T 7: 105,668,438 probably benign Het
Tnc A T 4: 63,965,579 probably benign Het
Toporsl T C 4: 52,611,114 W336R probably benign Het
Usp54 C A 14: 20,565,072 probably benign Het
Vmn1r233 T C 17: 20,994,029 R220G probably damaging Het
Other mutations in Hpd
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02483:Hpd APN 5 123182578 splice site probably null
IGL02510:Hpd APN 5 123181910 missense possibly damaging 0.95
IGL02574:Hpd APN 5 123179357 splice site probably benign
IGL03374:Hpd APN 5 123172045 missense probably damaging 1.00
pyruvian UTSW 5 123178192 nonsense probably null
R0079:Hpd UTSW 5 123181481 missense probably damaging 1.00
R1022:Hpd UTSW 5 123174469 missense possibly damaging 0.94
R1024:Hpd UTSW 5 123174469 missense possibly damaging 0.94
R1165:Hpd UTSW 5 123176090 critical splice donor site probably null
R2414:Hpd UTSW 5 123177524 splice site probably null
R6572:Hpd UTSW 5 123180676 missense probably benign 0.22
R6604:Hpd UTSW 5 123180901 splice site probably null
R6616:Hpd UTSW 5 123172060 missense probably damaging 1.00
R7539:Hpd UTSW 5 123178192 nonsense probably null
R7952:Hpd UTSW 5 123178264 missense possibly damaging 0.91
R8023:Hpd UTSW 5 123176234 missense probably damaging 1.00
R8086:Hpd UTSW 5 123176189 missense probably benign 0.20
R8134:Hpd UTSW 5 123174380 missense probably benign
X0023:Hpd UTSW 5 123174439 missense probably damaging 1.00
Z1176:Hpd UTSW 5 123181475 missense probably damaging 1.00
Posted On2015-04-16