Incidental Mutation 'IGL02695:Stk11'
| ID |
303909 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Stk11
|
| Ensembl Gene |
ENSMUSG00000003068 |
| Gene Name |
serine/threonine kinase 11 |
| Synonyms |
Lkb1, Par-4 |
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
IGL02695
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
10 |
| Chromosomal Location |
79951637-79966516 bp(+) (GRCm39) |
| Type of Mutation |
critical splice acceptor site |
| DNA Base Change (assembly) |
A to G
at 79961311 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000150488
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000003152]
[ENSMUST00000105370]
[ENSMUST00000105371]
[ENSMUST00000144883]
[ENSMUST00000170219]
[ENSMUST00000169546]
[ENSMUST00000213772]
[ENSMUST00000152592]
|
| AlphaFold |
Q9WTK7 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000003152
|
| SMART Domains |
Protein: ENSMUSP00000003152
Gene: ENSMUSG00000003068
| Domain | Start | End | E-Value | Type |
|---|
|
S_TKc
|
49 |
309 |
1.28e-80 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000105370
|
| SMART Domains |
Protein: ENSMUSP00000101009
Gene: ENSMUSG00000003068
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Pkinase_Tyr
|
1 |
180 |
2.8e-22 |
PFAM |
|
Pfam:Pkinase
|
1 |
183 |
2.8e-40 |
PFAM |
|
Pfam:Kinase-like
|
8 |
171 |
5.7e-11 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000105371
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000129235
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000144108
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000144119
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000144883
|
| SMART Domains |
Protein: ENSMUSP00000114195
Gene: ENSMUSG00000003068
| Domain | Start | End | E-Value | Type |
|---|
|
S_TKc
|
49 |
309 |
1.28e-80 |
SMART |
|
low complexity region
|
396 |
411 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000170219
|
| SMART Domains |
Protein: ENSMUSP00000131487
Gene: ENSMUSG00000035640
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
4 |
21 |
N/A |
INTRINSIC |
|
transmembrane domain
|
41 |
63 |
N/A |
INTRINSIC |
|
low complexity region
|
185 |
197 |
N/A |
INTRINSIC |
|
low complexity region
|
269 |
277 |
N/A |
INTRINSIC |
|
low complexity region
|
380 |
388 |
N/A |
INTRINSIC |
|
low complexity region
|
402 |
420 |
N/A |
INTRINSIC |
|
low complexity region
|
444 |
484 |
N/A |
INTRINSIC |
|
low complexity region
|
515 |
534 |
N/A |
INTRINSIC |
|
low complexity region
|
559 |
573 |
N/A |
INTRINSIC |
|
low complexity region
|
627 |
651 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000169546
|
| SMART Domains |
Protein: ENSMUSP00000132978
Gene: ENSMUSG00000035640
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
2 |
15 |
N/A |
INTRINSIC |
|
transmembrane domain
|
35 |
57 |
N/A |
INTRINSIC |
|
low complexity region
|
192 |
204 |
N/A |
INTRINSIC |
|
low complexity region
|
276 |
284 |
N/A |
INTRINSIC |
|
low complexity region
|
387 |
395 |
N/A |
INTRINSIC |
|
low complexity region
|
409 |
427 |
N/A |
INTRINSIC |
|
low complexity region
|
451 |
491 |
N/A |
INTRINSIC |
|
low complexity region
|
522 |
541 |
N/A |
INTRINSIC |
|
low complexity region
|
566 |
580 |
N/A |
INTRINSIC |
|
low complexity region
|
634 |
658 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000213772
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000152592
|
| SMART Domains |
Protein: ENSMUSP00000118853
Gene: ENSMUSG00000003068
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:S_TKc
|
1 |
53 |
6e-31 |
BLAST |
|
PDB:2WTK|F
|
1 |
74 |
1e-40 |
PDB |
|
SCOP:d1koba_
|
1 |
89 |
1e-12 |
SMART |
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: This gene encodes a member of the serine/threonine kinase family. The encoded protein, a known tumor suppressor, activates (via phosphorylation) adenine monophosphate-activated protein kinase (AMPK) and AMPK-related kinase proteins. This upstream regulation of the AMPK pathway is thought to regulate a number of different processes, including cell metabolism, cell polarity, apoptosis and DNA damage response. Mutations in a similar gene in human have been associated with Peutz-Jeghers syndrome. Alternative splicing results in multiple transcript variants, including the S isoform which plays a potential role in spermiogenesis. [provided by RefSeq, Sep 2014]
PHENOTYPE: Targeted heterozygous mutants with one inactivated allele develop benign gastrointestinal polyps. Homozygous null mutant are embryonic lethal. Homozygotes for a hypomorphic allele survive and apparently normal, but male mice are infertile. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 38 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adam2 |
A |
T |
14: 66,287,929 (GRCm39) |
M389K |
probably benign |
Het |
| Adamts4 |
C |
A |
1: 171,080,203 (GRCm39) |
T252K |
probably damaging |
Het |
| Adgrb2 |
G |
A |
4: 129,912,625 (GRCm39) |
G1293D |
probably damaging |
Het |
| Ankfn1 |
T |
C |
11: 89,282,645 (GRCm39) |
E1013G |
probably damaging |
Het |
| Ankrd34b |
C |
A |
13: 92,576,120 (GRCm39) |
H451N |
possibly damaging |
Het |
| Cd300c2 |
C |
T |
11: 114,892,379 (GRCm39) |
|
probably benign |
Het |
| Cntnap3 |
T |
G |
13: 64,919,946 (GRCm39) |
Q637P |
probably benign |
Het |
| Cpne6 |
A |
T |
14: 55,752,037 (GRCm39) |
I265F |
probably damaging |
Het |
| Dot1l |
C |
A |
10: 80,613,442 (GRCm39) |
T18K |
probably damaging |
Het |
| Fam83c |
T |
C |
2: 155,673,435 (GRCm39) |
D251G |
probably benign |
Het |
| Fyb1 |
A |
G |
15: 6,610,402 (GRCm39) |
K325R |
probably damaging |
Het |
| Gas2l2 |
T |
A |
11: 83,313,468 (GRCm39) |
I615F |
probably damaging |
Het |
| Gigyf2 |
A |
G |
1: 87,344,549 (GRCm39) |
N494S |
probably benign |
Het |
| Gnaz |
T |
C |
10: 74,827,974 (GRCm39) |
|
probably null |
Het |
| Haus5 |
A |
T |
7: 30,362,702 (GRCm39) |
L36Q |
probably damaging |
Het |
| Hecw2 |
C |
T |
1: 53,965,368 (GRCm39) |
G486D |
possibly damaging |
Het |
| Hmcn2 |
T |
C |
2: 31,298,985 (GRCm39) |
F2777S |
possibly damaging |
Het |
| Il1rl1 |
T |
C |
1: 40,485,718 (GRCm39) |
S290P |
possibly damaging |
Het |
| Itgam |
G |
T |
7: 127,685,113 (GRCm39) |
A409S |
possibly damaging |
Het |
| Kdm5b |
T |
A |
1: 134,532,223 (GRCm39) |
M467K |
possibly damaging |
Het |
| Lama2 |
A |
C |
10: 26,876,771 (GRCm39) |
V2725G |
probably benign |
Het |
| Lhpp |
G |
A |
7: 132,252,063 (GRCm39) |
R234Q |
probably damaging |
Het |
| Maf1 |
T |
C |
15: 76,236,955 (GRCm39) |
S65P |
possibly damaging |
Het |
| Mgat5 |
T |
A |
1: 127,339,868 (GRCm39) |
H416Q |
probably damaging |
Het |
| Mta2 |
A |
G |
19: 8,925,728 (GRCm39) |
T408A |
probably benign |
Het |
| Neb |
T |
A |
2: 52,145,603 (GRCm39) |
I2974F |
probably damaging |
Het |
| Neb |
C |
T |
2: 52,101,608 (GRCm39) |
|
probably benign |
Het |
| Or1j19 |
C |
T |
2: 36,677,332 (GRCm39) |
S265L |
possibly damaging |
Het |
| Or2d4 |
A |
G |
7: 106,543,870 (GRCm39) |
S113P |
possibly damaging |
Het |
| Or52p1 |
A |
G |
7: 104,267,678 (GRCm39) |
H264R |
probably damaging |
Het |
| Or5w22 |
C |
T |
2: 87,362,461 (GRCm39) |
T28I |
probably benign |
Het |
| Pcca |
T |
A |
14: 122,820,150 (GRCm39) |
|
probably benign |
Het |
| Prlr |
T |
C |
15: 10,328,451 (GRCm39) |
F309L |
probably benign |
Het |
| Slc28a1 |
A |
T |
7: 80,817,739 (GRCm39) |
Y536F |
probably benign |
Het |
| Slco1a8 |
A |
G |
6: 141,933,486 (GRCm39) |
V433A |
probably damaging |
Het |
| Stab1 |
T |
A |
14: 30,881,228 (GRCm39) |
N601Y |
probably damaging |
Het |
| Stil |
G |
T |
4: 114,873,372 (GRCm39) |
V332F |
probably damaging |
Het |
| Tmem59 |
A |
G |
4: 107,050,511 (GRCm39) |
N147S |
probably benign |
Het |
|
| Other mutations in Stk11 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL03055:Stk11
|
UTSW |
10 |
79,963,920 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0450:Stk11
|
UTSW |
10 |
79,961,920 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0469:Stk11
|
UTSW |
10 |
79,961,920 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0501:Stk11
|
UTSW |
10 |
79,962,119 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3826:Stk11
|
UTSW |
10 |
79,963,782 (GRCm39) |
splice site |
probably null |
|
|
R3827:Stk11
|
UTSW |
10 |
79,963,782 (GRCm39) |
splice site |
probably null |
|
|
R3828:Stk11
|
UTSW |
10 |
79,963,782 (GRCm39) |
splice site |
probably null |
|
|
R3829:Stk11
|
UTSW |
10 |
79,963,782 (GRCm39) |
splice site |
probably null |
|
|
R4512:Stk11
|
UTSW |
10 |
79,962,211 (GRCm39) |
splice site |
probably benign |
|
|
R4515:Stk11
|
UTSW |
10 |
79,952,435 (GRCm39) |
unclassified |
probably benign |
|
|
R5123:Stk11
|
UTSW |
10 |
79,963,775 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5188:Stk11
|
UTSW |
10 |
79,962,113 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5341:Stk11
|
UTSW |
10 |
79,962,094 (GRCm39) |
missense |
probably benign |
0.13 |
|
R5540:Stk11
|
UTSW |
10 |
79,961,883 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6856:Stk11
|
UTSW |
10 |
79,963,924 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7213:Stk11
|
UTSW |
10 |
79,952,452 (GRCm39) |
start codon destroyed |
probably null |
0.05 |
|
R7792:Stk11
|
UTSW |
10 |
79,961,271 (GRCm39) |
intron |
probably benign |
|
|
R8289:Stk11
|
UTSW |
10 |
79,961,740 (GRCm39) |
unclassified |
probably benign |
|
|
R8299:Stk11
|
UTSW |
10 |
79,963,867 (GRCm39) |
missense |
probably benign |
|
|
R8859:Stk11
|
UTSW |
10 |
79,964,269 (GRCm39) |
missense |
probably benign |
|
|
Z1177:Stk11
|
UTSW |
10 |
79,964,322 (GRCm39) |
missense |
unknown |
|
|
| Posted On |
2015-04-16 |
Incidental Mutation