Incidental Mutation 'IGL02699:Casq1'
ID |
304083 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Casq1
|
Ensembl Gene |
ENSMUSG00000007122 |
Gene Name |
calsequestrin 1 |
Synonyms |
CSQ-1, CSQ, sCSQ, CSQ1 |
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
IGL02699
|
Quality Score |
|
Status
|
|
Chromosome |
1 |
Chromosomal Location |
172037461-172047435 bp(-) (GRCm39) |
Type of Mutation |
start gained |
DNA Base Change (assembly) |
T to C
at 172047263 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
|
Ref Sequence |
ENSEMBL: ENSMUSP00000129647
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000003554]
[ENSMUST00000111243]
[ENSMUST00000170700]
|
AlphaFold |
O09165 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000003554
|
SMART Domains |
Protein: ENSMUSP00000003554 Gene: ENSMUSG00000007122
Domain | Start | End | E-Value | Type |
Pfam:Calsequestrin
|
11 |
402 |
5.3e-238 |
PFAM |
Pfam:Thioredoxin_6
|
186 |
379 |
2e-21 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000111243
|
SMART Domains |
Protein: ENSMUSP00000106874 Gene: ENSMUSG00000007107
Domain | Start | End | E-Value | Type |
low complexity region
|
33 |
50 |
N/A |
INTRINSIC |
Cation_ATPase_N
|
51 |
125 |
1.22e-14 |
SMART |
Pfam:E1-E2_ATPase
|
144 |
375 |
2.6e-59 |
PFAM |
Pfam:Hydrolase
|
380 |
738 |
8.1e-19 |
PFAM |
Pfam:HAD
|
383 |
735 |
1.6e-17 |
PFAM |
Pfam:Cation_ATPase
|
437 |
531 |
9.2e-25 |
PFAM |
Pfam:Cation_ATPase_C
|
808 |
1017 |
1.2e-47 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000170700
|
SMART Domains |
Protein: ENSMUSP00000129647 Gene: ENSMUSG00000007122
Domain | Start | End | E-Value | Type |
Pfam:Calsequestrin
|
11 |
94 |
9.7e-38 |
PFAM |
Pfam:Calsequestrin
|
89 |
156 |
6.9e-38 |
PFAM |
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes the skeletal muscle specific member of the calsequestrin protein family. Calsequestrin functions as a luminal sarcoplasmic reticulum calcium sensor in both cardiac and skeletal muscle cells. This protein, also known as calmitine, functions as a calcium regulator in the mitochondria of skeletal muscle. This protein is absent in patients with Duchenne and Becker types of muscular dystrophy. [provided by RefSeq, Jun 2013] PHENOTYPE: Mice homozygous for an insertional mutation that inactivates the gene exhibit structural alterations of the Ca2+ release units, an increased frequency of mitochondria, and significantly impaired calcium handling in skeletal muscle. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 32 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Adarb1 |
T |
C |
10: 77,157,853 (GRCm39) |
D198G |
probably benign |
Het |
Cd109 |
T |
A |
9: 78,579,271 (GRCm39) |
|
probably benign |
Het |
Col15a1 |
T |
G |
4: 47,284,471 (GRCm39) |
|
probably benign |
Het |
Ctdp1 |
T |
C |
18: 80,493,400 (GRCm39) |
D365G |
probably benign |
Het |
Daam1 |
T |
C |
12: 72,035,717 (GRCm39) |
F971L |
probably damaging |
Het |
Dalrd3 |
T |
A |
9: 108,448,088 (GRCm39) |
|
probably benign |
Het |
Dnaaf5 |
T |
C |
5: 139,139,105 (GRCm39) |
|
probably benign |
Het |
Efr3b |
C |
T |
12: 4,033,391 (GRCm39) |
V139I |
probably benign |
Het |
Fbxo8 |
A |
G |
8: 57,043,223 (GRCm39) |
T236A |
possibly damaging |
Het |
Ighv1-12 |
C |
A |
12: 114,579,736 (GRCm39) |
E29* |
probably null |
Het |
Il17re |
A |
G |
6: 113,445,880 (GRCm39) |
D397G |
probably damaging |
Het |
Ing5 |
A |
G |
1: 93,744,164 (GRCm39) |
N157D |
possibly damaging |
Het |
Ipo11 |
T |
C |
13: 107,025,905 (GRCm39) |
E395G |
possibly damaging |
Het |
Letm1 |
T |
C |
5: 33,902,492 (GRCm39) |
E599G |
possibly damaging |
Het |
Mansc1 |
T |
C |
6: 134,587,317 (GRCm39) |
T287A |
probably benign |
Het |
Med1 |
T |
C |
11: 98,070,851 (GRCm39) |
N131D |
possibly damaging |
Het |
Or10ak13 |
G |
T |
4: 118,639,349 (GRCm39) |
C144* |
probably null |
Het |
Or13p3 |
T |
C |
4: 118,567,395 (GRCm39) |
S264P |
probably benign |
Het |
Or6c2b |
T |
G |
10: 128,947,640 (GRCm39) |
Y218S |
probably benign |
Het |
Or8k38 |
A |
T |
2: 86,488,691 (GRCm39) |
I37N |
probably benign |
Het |
Osm |
T |
C |
11: 4,189,723 (GRCm39) |
V169A |
possibly damaging |
Het |
Phkg2 |
C |
T |
7: 127,181,722 (GRCm39) |
A278V |
probably benign |
Het |
Plod2 |
T |
A |
9: 92,489,195 (GRCm39) |
M709K |
probably damaging |
Het |
Pzp |
A |
T |
6: 128,464,364 (GRCm39) |
|
probably null |
Het |
Ric1 |
T |
C |
19: 29,499,957 (GRCm39) |
L12P |
possibly damaging |
Het |
Skor1 |
C |
A |
9: 63,047,328 (GRCm39) |
|
probably benign |
Het |
Slc39a10 |
G |
A |
1: 46,857,288 (GRCm39) |
A696V |
probably damaging |
Het |
Syncrip |
A |
G |
9: 88,338,607 (GRCm39) |
|
probably benign |
Het |
Tex2 |
T |
C |
11: 106,459,259 (GRCm39) |
E57G |
possibly damaging |
Het |
Tmc1 |
C |
T |
19: 20,809,714 (GRCm39) |
|
probably null |
Het |
Tmem59 |
T |
C |
4: 107,049,735 (GRCm39) |
M140T |
probably benign |
Het |
Ttn |
T |
C |
2: 76,774,433 (GRCm39) |
T2158A |
probably damaging |
Het |
|
Other mutations in Casq1 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL02165:Casq1
|
APN |
1 |
172,040,948 (GRCm39) |
missense |
probably damaging |
0.96 |
IGL02756:Casq1
|
APN |
1 |
172,042,672 (GRCm39) |
missense |
probably damaging |
1.00 |
PIT4377001:Casq1
|
UTSW |
1 |
172,039,568 (GRCm39) |
missense |
probably benign |
0.15 |
R0026:Casq1
|
UTSW |
1 |
172,046,967 (GRCm39) |
splice site |
probably benign |
|
R0026:Casq1
|
UTSW |
1 |
172,046,967 (GRCm39) |
splice site |
probably benign |
|
R0124:Casq1
|
UTSW |
1 |
172,037,992 (GRCm39) |
missense |
probably damaging |
1.00 |
R0485:Casq1
|
UTSW |
1 |
172,037,957 (GRCm39) |
unclassified |
probably benign |
|
R1982:Casq1
|
UTSW |
1 |
172,043,097 (GRCm39) |
missense |
probably damaging |
1.00 |
R2095:Casq1
|
UTSW |
1 |
172,043,529 (GRCm39) |
missense |
probably benign |
0.26 |
R2097:Casq1
|
UTSW |
1 |
172,037,988 (GRCm39) |
missense |
probably damaging |
1.00 |
R3940:Casq1
|
UTSW |
1 |
172,047,103 (GRCm39) |
missense |
possibly damaging |
0.91 |
R4654:Casq1
|
UTSW |
1 |
172,037,965 (GRCm39) |
unclassified |
probably benign |
|
R4790:Casq1
|
UTSW |
1 |
172,044,404 (GRCm39) |
missense |
probably damaging |
1.00 |
R5002:Casq1
|
UTSW |
1 |
172,040,945 (GRCm39) |
missense |
possibly damaging |
0.50 |
R5187:Casq1
|
UTSW |
1 |
172,040,641 (GRCm39) |
missense |
possibly damaging |
0.54 |
R5307:Casq1
|
UTSW |
1 |
172,046,983 (GRCm39) |
missense |
probably damaging |
1.00 |
R5973:Casq1
|
UTSW |
1 |
172,047,068 (GRCm39) |
missense |
probably damaging |
1.00 |
R6251:Casq1
|
UTSW |
1 |
172,044,407 (GRCm39) |
missense |
probably benign |
0.17 |
R6768:Casq1
|
UTSW |
1 |
172,047,245 (GRCm39) |
missense |
probably benign |
0.04 |
R7380:Casq1
|
UTSW |
1 |
172,044,416 (GRCm39) |
missense |
probably benign |
0.07 |
R9014:Casq1
|
UTSW |
1 |
172,038,064 (GRCm39) |
missense |
probably damaging |
1.00 |
R9292:Casq1
|
UTSW |
1 |
172,043,114 (GRCm39) |
missense |
probably damaging |
1.00 |
R9739:Casq1
|
UTSW |
1 |
172,043,051 (GRCm39) |
missense |
possibly damaging |
0.93 |
Z1176:Casq1
|
UTSW |
1 |
172,043,481 (GRCm39) |
nonsense |
probably null |
|
|
Posted On |
2015-04-16 |