Incidental Mutation 'IGL02716:Acsl6'
ID |
304772 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Acsl6
|
Ensembl Gene |
ENSMUSG00000020333 |
Gene Name |
acyl-CoA synthetase long-chain family member 6 |
Synonyms |
Lacsl, A330035H04Rik, Facl6 |
Accession Numbers |
|
Essential gene? |
Possibly non essential
(E-score: 0.402)
|
Stock # |
IGL02716
|
Quality Score |
|
Status
|
|
Chromosome |
11 |
Chromosomal Location |
54194624-54255582 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to C
at 54218102 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Serine to Proline
at position 212
(S212P)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000119714
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000000145]
[ENSMUST00000064690]
[ENSMUST00000072178]
[ENSMUST00000093106]
[ENSMUST00000094194]
[ENSMUST00000101211]
[ENSMUST00000101213]
[ENSMUST00000108899]
[ENSMUST00000108904]
[ENSMUST00000156252]
[ENSMUST00000108905]
[ENSMUST00000149403]
[ENSMUST00000138515]
|
AlphaFold |
Q91WC3 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000000145
AA Change: S212P
PolyPhen 2
Score 0.016 (Sensitivity: 0.95; Specificity: 0.79)
|
SMART Domains |
Protein: ENSMUSP00000000145 Gene: ENSMUSG00000020333 AA Change: S212P
Domain | Start | End | E-Value | Type |
Pfam:AMP-binding
|
68 |
273 |
7.7e-39 |
PFAM |
Pfam:AMP-binding
|
262 |
488 |
2.7e-52 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000064690
AA Change: S247P
PolyPhen 2
Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)
|
SMART Domains |
Protein: ENSMUSP00000069844 Gene: ENSMUSG00000020333 AA Change: S247P
Domain | Start | End | E-Value | Type |
transmembrane domain
|
21 |
43 |
N/A |
INTRINSIC |
Pfam:AMP-binding
|
102 |
346 |
5.5e-45 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000072178
AA Change: S247P
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
SMART Domains |
Protein: ENSMUSP00000072040 Gene: ENSMUSG00000020333 AA Change: S247P
Domain | Start | End | E-Value | Type |
transmembrane domain
|
21 |
43 |
N/A |
INTRINSIC |
Pfam:AMP-binding
|
103 |
563 |
2.3e-103 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000093106
AA Change: S247P
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
SMART Domains |
Protein: ENSMUSP00000090795 Gene: ENSMUSG00000020333 AA Change: S247P
Domain | Start | End | E-Value | Type |
transmembrane domain
|
21 |
43 |
N/A |
INTRINSIC |
Pfam:AMP-binding
|
103 |
563 |
2.3e-103 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000094194
AA Change: S247P
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
SMART Domains |
Protein: ENSMUSP00000091746 Gene: ENSMUSG00000020333 AA Change: S247P
Domain | Start | End | E-Value | Type |
transmembrane domain
|
21 |
43 |
N/A |
INTRINSIC |
Pfam:AMP-binding
|
103 |
563 |
2.3e-103 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000101211
AA Change: S247P
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
SMART Domains |
Protein: ENSMUSP00000098771 Gene: ENSMUSG00000020333 AA Change: S247P
Domain | Start | End | E-Value | Type |
transmembrane domain
|
21 |
43 |
N/A |
INTRINSIC |
Pfam:AMP-binding
|
103 |
563 |
1.9e-103 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000101213
AA Change: S247P
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
SMART Domains |
Protein: ENSMUSP00000098773 Gene: ENSMUSG00000020333 AA Change: S247P
Domain | Start | End | E-Value | Type |
transmembrane domain
|
21 |
43 |
N/A |
INTRINSIC |
Pfam:AMP-binding
|
103 |
563 |
1.9e-103 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000108899
AA Change: S247P
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
SMART Domains |
Protein: ENSMUSP00000104527 Gene: ENSMUSG00000020333 AA Change: S247P
Domain | Start | End | E-Value | Type |
transmembrane domain
|
21 |
43 |
N/A |
INTRINSIC |
Pfam:AMP-binding
|
103 |
409 |
2.3e-54 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000108904
AA Change: S272P
PolyPhen 2
Score 0.016 (Sensitivity: 0.95; Specificity: 0.79)
|
SMART Domains |
Protein: ENSMUSP00000104532 Gene: ENSMUSG00000020333 AA Change: S272P
Domain | Start | End | E-Value | Type |
transmembrane domain
|
4 |
23 |
N/A |
INTRINSIC |
transmembrane domain
|
46 |
68 |
N/A |
INTRINSIC |
Pfam:AMP-binding
|
128 |
588 |
1.6e-103 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000156252
AA Change: S212P
PolyPhen 2
Score 0.017 (Sensitivity: 0.95; Specificity: 0.80)
|
SMART Domains |
Protein: ENSMUSP00000119714 Gene: ENSMUSG00000020333 AA Change: S212P
Domain | Start | End | E-Value | Type |
Pfam:AMP-binding
|
67 |
363 |
4.9e-54 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000108905
AA Change: S272P
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
SMART Domains |
Protein: ENSMUSP00000104533 Gene: ENSMUSG00000020333 AA Change: S272P
Domain | Start | End | E-Value | Type |
transmembrane domain
|
4 |
23 |
N/A |
INTRINSIC |
transmembrane domain
|
46 |
68 |
N/A |
INTRINSIC |
Pfam:AMP-binding
|
128 |
588 |
7.7e-113 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000149403
|
SMART Domains |
Protein: ENSMUSP00000120540 Gene: ENSMUSG00000020333
Domain | Start | End | E-Value | Type |
transmembrane domain
|
21 |
43 |
N/A |
INTRINSIC |
SCOP:d1lci__
|
82 |
139 |
2e-7 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000138515
|
SMART Domains |
Protein: ENSMUSP00000117128 Gene: ENSMUSG00000020333
Domain | Start | End | E-Value | Type |
transmembrane domain
|
21 |
43 |
N/A |
INTRINSIC |
Pfam:AMP-binding
|
101 |
192 |
5.1e-18 |
PFAM |
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene catalyzes the formation of acyl-CoA from fatty acids, ATP, and CoA, using magnesium as a cofactor. The encoded protein plays a major role in fatty acid metabolism in the brain. Translocations with the ETV6 gene are causes of myelodysplastic syndrome with basophilia, acute myelogenous leukemia with eosinophilia, and acute eosinophilic leukemia. Several transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, Apr 2011]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 58 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Ago2 |
C |
T |
15: 72,983,576 (GRCm39) |
R711Q |
possibly damaging |
Het |
Akp3 |
A |
C |
1: 87,053,201 (GRCm39) |
D91A |
probably damaging |
Het |
Arhgap12 |
T |
A |
18: 6,111,857 (GRCm39) |
Q169L |
possibly damaging |
Het |
Aspm |
A |
G |
1: 139,407,425 (GRCm39) |
Y2104C |
probably damaging |
Het |
Baz2b |
G |
A |
2: 59,792,868 (GRCm39) |
S420L |
possibly damaging |
Het |
Cenpo |
T |
C |
12: 4,265,390 (GRCm39) |
N210S |
possibly damaging |
Het |
Chadl |
T |
C |
15: 81,580,116 (GRCm39) |
N40D |
probably damaging |
Het |
Crebbp |
T |
C |
16: 3,932,742 (GRCm39) |
E586G |
probably benign |
Het |
Cts7 |
T |
A |
13: 61,504,422 (GRCm39) |
Q47L |
probably benign |
Het |
Cyp2c40 |
C |
A |
19: 39,795,980 (GRCm39) |
D133Y |
possibly damaging |
Het |
Dnah3 |
A |
T |
7: 119,536,246 (GRCm39) |
M3679K |
probably damaging |
Het |
Dym |
T |
C |
18: 75,419,754 (GRCm39) |
Y642H |
probably damaging |
Het |
Efr3b |
T |
C |
12: 4,034,627 (GRCm39) |
D65G |
probably damaging |
Het |
Elmo1 |
T |
A |
13: 20,633,672 (GRCm39) |
F445I |
probably damaging |
Het |
Epdr1 |
C |
T |
13: 19,778,740 (GRCm39) |
V119M |
probably benign |
Het |
Epha4 |
G |
T |
1: 77,357,602 (GRCm39) |
R799S |
probably damaging |
Het |
Esyt3 |
A |
T |
9: 99,199,277 (GRCm39) |
V778E |
probably damaging |
Het |
F10 |
A |
T |
8: 13,098,177 (GRCm39) |
K127* |
probably null |
Het |
Fcgbp |
G |
A |
7: 27,800,859 (GRCm39) |
E1302K |
probably damaging |
Het |
Fer1l4 |
A |
G |
2: 155,871,635 (GRCm39) |
F1382L |
probably damaging |
Het |
Fhad1 |
T |
C |
4: 141,645,642 (GRCm39) |
I318V |
possibly damaging |
Het |
Fscn2 |
A |
T |
11: 120,257,550 (GRCm39) |
T304S |
probably benign |
Het |
Gab1 |
A |
T |
8: 81,496,323 (GRCm39) |
L659Q |
probably damaging |
Het |
Gm4845 |
A |
C |
1: 141,184,576 (GRCm39) |
|
noncoding transcript |
Het |
Gm572 |
A |
G |
4: 148,739,327 (GRCm39) |
M52V |
probably benign |
Het |
Hmgcr |
T |
C |
13: 96,796,520 (GRCm39) |
|
probably null |
Het |
Kcnk5 |
T |
C |
14: 20,231,496 (GRCm39) |
T9A |
probably damaging |
Het |
Krt87 |
A |
C |
15: 101,332,485 (GRCm39) |
F243V |
possibly damaging |
Het |
Lyset |
A |
G |
12: 102,711,088 (GRCm39) |
T104A |
probably benign |
Het |
Mast1 |
G |
T |
8: 85,662,352 (GRCm39) |
P52Q |
probably damaging |
Het |
Mcf2l |
A |
T |
8: 13,047,277 (GRCm39) |
Q211L |
probably benign |
Het |
Mtrex |
T |
G |
13: 113,019,680 (GRCm39) |
D810A |
probably benign |
Het |
Mtus2 |
C |
A |
5: 148,173,120 (GRCm39) |
P968T |
probably benign |
Het |
Mylk2 |
T |
C |
2: 152,764,073 (GRCm39) |
*614R |
probably null |
Het |
Myo15b |
A |
T |
11: 115,774,535 (GRCm39) |
E2049V |
probably benign |
Het |
Myo6 |
A |
T |
9: 80,176,976 (GRCm39) |
H581L |
probably damaging |
Het |
Numb |
A |
T |
12: 83,847,982 (GRCm39) |
S241T |
possibly damaging |
Het |
Or1j10 |
A |
G |
2: 36,267,355 (GRCm39) |
D189G |
possibly damaging |
Het |
Or4k77 |
A |
T |
2: 111,199,126 (GRCm39) |
I50F |
probably benign |
Het |
Or4x11 |
G |
T |
2: 89,868,138 (GRCm39) |
V292L |
probably benign |
Het |
Phldb2 |
A |
G |
16: 45,621,953 (GRCm39) |
S676P |
probably damaging |
Het |
Rttn |
G |
A |
18: 89,066,541 (GRCm39) |
E1196K |
possibly damaging |
Het |
Slc13a3 |
G |
A |
2: 165,248,635 (GRCm39) |
P548S |
unknown |
Het |
Slc2a7 |
A |
G |
4: 150,244,467 (GRCm39) |
|
probably benign |
Het |
Slc37a1 |
T |
C |
17: 31,547,135 (GRCm39) |
S261P |
possibly damaging |
Het |
Spryd3 |
T |
A |
15: 102,041,896 (GRCm39) |
Y42F |
possibly damaging |
Het |
Srrm3 |
A |
G |
5: 135,883,287 (GRCm39) |
|
probably null |
Het |
Stambp |
G |
A |
6: 83,533,372 (GRCm39) |
T297I |
probably damaging |
Het |
Sypl1 |
T |
A |
12: 33,017,668 (GRCm39) |
Y129N |
probably damaging |
Het |
Syt14 |
G |
A |
1: 192,662,843 (GRCm39) |
P368S |
possibly damaging |
Het |
Tas2r122 |
T |
C |
6: 132,688,227 (GRCm39) |
D222G |
probably damaging |
Het |
Tead2 |
C |
A |
7: 44,881,720 (GRCm39) |
Y79* |
probably null |
Het |
Uso1 |
T |
C |
5: 92,321,794 (GRCm39) |
V229A |
probably damaging |
Het |
Vmn1r238 |
A |
G |
18: 3,123,124 (GRCm39) |
S97P |
probably damaging |
Het |
Vmn2r82 |
T |
A |
10: 79,213,678 (GRCm39) |
V88D |
probably benign |
Het |
Vps29 |
A |
G |
5: 122,500,129 (GRCm39) |
T85A |
probably benign |
Het |
Wdr90 |
T |
A |
17: 26,076,194 (GRCm39) |
S500C |
probably damaging |
Het |
Zfp958 |
G |
A |
8: 4,675,967 (GRCm39) |
|
probably null |
Het |
|
Other mutations in Acsl6 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00964:Acsl6
|
APN |
11 |
54,216,472 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01374:Acsl6
|
APN |
11 |
54,229,245 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01455:Acsl6
|
APN |
11 |
54,214,131 (GRCm39) |
missense |
possibly damaging |
0.93 |
IGL01607:Acsl6
|
APN |
11 |
54,243,823 (GRCm39) |
missense |
possibly damaging |
0.94 |
IGL01731:Acsl6
|
APN |
11 |
54,241,385 (GRCm39) |
missense |
probably benign |
0.04 |
IGL01775:Acsl6
|
APN |
11 |
54,236,826 (GRCm39) |
splice site |
probably benign |
|
IGL02487:Acsl6
|
APN |
11 |
54,227,769 (GRCm39) |
missense |
possibly damaging |
0.76 |
IGL02893:Acsl6
|
APN |
11 |
54,236,725 (GRCm39) |
missense |
probably damaging |
1.00 |
R0514:Acsl6
|
UTSW |
11 |
54,241,406 (GRCm39) |
missense |
probably damaging |
1.00 |
R0739:Acsl6
|
UTSW |
11 |
54,227,961 (GRCm39) |
missense |
probably damaging |
1.00 |
R1593:Acsl6
|
UTSW |
11 |
54,214,134 (GRCm39) |
missense |
probably damaging |
1.00 |
R1611:Acsl6
|
UTSW |
11 |
54,216,390 (GRCm39) |
missense |
possibly damaging |
0.93 |
R1626:Acsl6
|
UTSW |
11 |
54,242,872 (GRCm39) |
missense |
probably damaging |
1.00 |
R1633:Acsl6
|
UTSW |
11 |
54,219,224 (GRCm39) |
splice site |
probably benign |
|
R1697:Acsl6
|
UTSW |
11 |
54,220,792 (GRCm39) |
missense |
probably damaging |
1.00 |
R1852:Acsl6
|
UTSW |
11 |
54,251,902 (GRCm39) |
missense |
probably damaging |
1.00 |
R1923:Acsl6
|
UTSW |
11 |
54,216,417 (GRCm39) |
missense |
probably damaging |
1.00 |
R2081:Acsl6
|
UTSW |
11 |
54,211,085 (GRCm39) |
missense |
possibly damaging |
0.76 |
R2144:Acsl6
|
UTSW |
11 |
54,232,604 (GRCm39) |
missense |
probably damaging |
1.00 |
R2167:Acsl6
|
UTSW |
11 |
54,217,983 (GRCm39) |
missense |
probably benign |
0.03 |
R2205:Acsl6
|
UTSW |
11 |
54,214,833 (GRCm39) |
missense |
probably damaging |
1.00 |
R2357:Acsl6
|
UTSW |
11 |
54,218,106 (GRCm39) |
missense |
probably damaging |
0.99 |
R4288:Acsl6
|
UTSW |
11 |
54,227,912 (GRCm39) |
missense |
probably benign |
0.19 |
R4450:Acsl6
|
UTSW |
11 |
54,219,229 (GRCm39) |
missense |
probably damaging |
1.00 |
R4783:Acsl6
|
UTSW |
11 |
54,227,819 (GRCm39) |
missense |
probably damaging |
1.00 |
R5115:Acsl6
|
UTSW |
11 |
54,231,324 (GRCm39) |
splice site |
probably null |
|
R5233:Acsl6
|
UTSW |
11 |
54,216,432 (GRCm39) |
missense |
possibly damaging |
0.69 |
R5416:Acsl6
|
UTSW |
11 |
54,227,997 (GRCm39) |
missense |
probably benign |
0.00 |
R5482:Acsl6
|
UTSW |
11 |
54,217,964 (GRCm39) |
missense |
probably damaging |
1.00 |
R5633:Acsl6
|
UTSW |
11 |
54,228,015 (GRCm39) |
missense |
probably benign |
|
R5749:Acsl6
|
UTSW |
11 |
54,214,881 (GRCm39) |
critical splice donor site |
probably null |
|
R6139:Acsl6
|
UTSW |
11 |
54,231,368 (GRCm39) |
missense |
probably damaging |
1.00 |
R6270:Acsl6
|
UTSW |
11 |
54,242,933 (GRCm39) |
missense |
probably benign |
0.45 |
R6337:Acsl6
|
UTSW |
11 |
54,231,368 (GRCm39) |
missense |
probably damaging |
1.00 |
R6571:Acsl6
|
UTSW |
11 |
54,216,390 (GRCm39) |
missense |
possibly damaging |
0.85 |
R6736:Acsl6
|
UTSW |
11 |
54,215,992 (GRCm39) |
missense |
probably damaging |
1.00 |
R6918:Acsl6
|
UTSW |
11 |
54,232,582 (GRCm39) |
splice site |
probably null |
|
R6919:Acsl6
|
UTSW |
11 |
54,232,582 (GRCm39) |
splice site |
probably null |
|
R7846:Acsl6
|
UTSW |
11 |
54,251,901 (GRCm39) |
missense |
probably damaging |
0.98 |
R7910:Acsl6
|
UTSW |
11 |
54,236,797 (GRCm39) |
nonsense |
probably null |
|
R8330:Acsl6
|
UTSW |
11 |
54,236,034 (GRCm39) |
missense |
probably benign |
0.22 |
R8532:Acsl6
|
UTSW |
11 |
54,218,001 (GRCm39) |
missense |
probably damaging |
1.00 |
R8535:Acsl6
|
UTSW |
11 |
54,229,328 (GRCm39) |
missense |
probably damaging |
1.00 |
R8884:Acsl6
|
UTSW |
11 |
54,236,728 (GRCm39) |
missense |
probably damaging |
1.00 |
R9036:Acsl6
|
UTSW |
11 |
54,227,840 (GRCm39) |
critical splice donor site |
probably null |
|
R9052:Acsl6
|
UTSW |
11 |
54,232,615 (GRCm39) |
missense |
possibly damaging |
0.78 |
R9455:Acsl6
|
UTSW |
11 |
54,210,752 (GRCm39) |
unclassified |
probably benign |
|
R9514:Acsl6
|
UTSW |
11 |
54,225,880 (GRCm39) |
missense |
probably benign |
0.00 |
R9530:Acsl6
|
UTSW |
11 |
54,220,783 (GRCm39) |
missense |
probably damaging |
1.00 |
R9603:Acsl6
|
UTSW |
11 |
54,225,911 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1177:Acsl6
|
UTSW |
11 |
54,210,998 (GRCm39) |
nonsense |
probably null |
|
|
Posted On |
2015-04-16 |