Mutagenetix > Incidental Mutation

Incidental Mutation 'R0373:Ciz1'

30577

Institutional Source

Beutler Lab

Gene Symbol

Ciz1

Ensembl Gene

ENSMUSG00000039205

Gene Name

CDKN1A interacting zinc finger protein 1

Synonyms

0610038H21Rik, 2900056O04Rik

MMRRC Submission

038579-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.170) question?

Stock #

R0373 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

32352327-32380970 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 32367467 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Tyrosine at position 175 (N175Y)

Ref Sequence

ENSEMBL: ENSMUSP00000120295 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000048964] [ENSMUST00000113331] [ENSMUST00000113332] [ENSMUST00000113334] [ENSMUST00000113338] [ENSMUST00000131152] [ENSMUST00000132028] [ENSMUST00000136079]

AlphaFold

Q8VEH2

Predicted Effect

probably damaging
Transcript: ENSMUST00000048964
AA Change: N175Y

PolyPhen 2 Score 0.974 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000048428
Gene: ENSMUSG00000039205
AA Change: N175Y

Domain	Start	End	E-Value	Type
coiled coil region	5	45	N/A	INTRINSIC
low complexity region	58	80	N/A	INTRINSIC
low complexity region	85	99	N/A	INTRINSIC
low complexity region	128	140	N/A	INTRINSIC
low complexity region	245	256	N/A	INTRINSIC
low complexity region	361	390	N/A	INTRINSIC
ZnF_U1	534	568	1.23e-1	SMART
ZnF_C2H2	537	561	1.99e0	SMART
ZnF_U1	626	660	2.08e-1	SMART
ZnF_C2H2	629	653	3.02e0	SMART
low complexity region	689	709	N/A	INTRINSIC
ZnF_U1	744	779	1.43e-4	SMART
ZnF_C2H2	747	772	9.56e1	SMART
low complexity region	823	845	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000113331
AA Change: N151Y

PolyPhen 2 Score 0.964 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000108957
Gene: ENSMUSG00000039205
AA Change: N151Y

Domain	Start	End	E-Value	Type
coiled coil region	5	45	N/A	INTRINSIC
low complexity region	58	80	N/A	INTRINSIC
low complexity region	85	100	N/A	INTRINSIC
low complexity region	104	116	N/A	INTRINSIC
low complexity region	221	232	N/A	INTRINSIC
internal_repeat_2	252	284	9.48e-5	PROSPERO
internal_repeat_2	301	333	9.48e-5	PROSPERO
low complexity region	337	366	N/A	INTRINSIC
ZnF_U1	510	544	1.23e-1	SMART
ZnF_C2H2	513	537	1.99e0	SMART
ZnF_U1	602	636	2.08e-1	SMART
ZnF_C2H2	605	629	3.02e0	SMART
low complexity region	665	685	N/A	INTRINSIC
ZnF_U1	720	755	1.43e-4	SMART
ZnF_C2H2	723	748	9.56e1	SMART
low complexity region	799	821	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000113332
AA Change: N175Y

PolyPhen 2 Score 0.979 (Sensitivity: 0.75; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000108958
Gene: ENSMUSG00000039205
AA Change: N175Y

Domain	Start	End	E-Value	Type
coiled coil region	5	45	N/A	INTRINSIC
low complexity region	58	80	N/A	INTRINSIC
low complexity region	85	99	N/A	INTRINSIC
low complexity region	128	140	N/A	INTRINSIC
low complexity region	240	251	N/A	INTRINSIC
ZnF_U1	480	514	1.23e-1	SMART
ZnF_C2H2	483	507	1.99e0	SMART
Blast:ZnF_U1	543	570	2e-6	BLAST
ZnF_U1	572	606	2.08e-1	SMART
ZnF_C2H2	575	599	3.02e0	SMART
low complexity region	635	655	N/A	INTRINSIC
ZnF_U1	690	725	1.43e-4	SMART
ZnF_C2H2	693	718	9.56e1	SMART
low complexity region	769	791	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000113334
AA Change: N175Y

PolyPhen 2 Score 0.974 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000108960
Gene: ENSMUSG00000039205
AA Change: N175Y

Domain	Start	End	E-Value	Type
coiled coil region	5	45	N/A	INTRINSIC
low complexity region	58	80	N/A	INTRINSIC
low complexity region	85	99	N/A	INTRINSIC
low complexity region	128	140	N/A	INTRINSIC
low complexity region	245	256	N/A	INTRINSIC
low complexity region	361	390	N/A	INTRINSIC
ZnF_U1	534	568	1.23e-1	SMART
ZnF_C2H2	537	561	1.99e0	SMART
ZnF_U1	626	660	2.08e-1	SMART
ZnF_C2H2	629	653	3.02e0	SMART
low complexity region	689	709	N/A	INTRINSIC
ZnF_U1	744	779	1.43e-4	SMART
ZnF_C2H2	747	772	9.56e1	SMART
low complexity region	823	845	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000113338
AA Change: N175Y

PolyPhen 2 Score 0.974 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000108964
Gene: ENSMUSG00000039205
AA Change: N175Y

Domain	Start	End	E-Value	Type
coiled coil region	5	45	N/A	INTRINSIC
low complexity region	58	80	N/A	INTRINSIC
low complexity region	85	99	N/A	INTRINSIC
low complexity region	128	140	N/A	INTRINSIC
low complexity region	245	256	N/A	INTRINSIC
low complexity region	361	390	N/A	INTRINSIC
ZnF_U1	534	568	1.23e-1	SMART
ZnF_C2H2	537	561	1.99e0	SMART
ZnF_U1	626	660	2.08e-1	SMART
ZnF_C2H2	629	653	3.02e0	SMART
low complexity region	689	709	N/A	INTRINSIC
ZnF_U1	744	779	1.43e-4	SMART
ZnF_C2H2	747	772	9.56e1	SMART
low complexity region	823	845	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000125482

SMART Domains

Protein: ENSMUSP00000120019
Gene: ENSMUSG00000039205

Domain	Start	End	E-Value	Type
ZnF_C2H2	216	240	1.99e0	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000125769

Predicted Effect

probably benign
Transcript: ENSMUST00000131152

SMART Domains

Protein: ENSMUSP00000141211
Gene: ENSMUSG00000039205

Domain	Start	End	E-Value	Type
coiled coil region	5	45	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000132028
AA Change: N175Y

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000120295
Gene: ENSMUSG00000039205
AA Change: N175Y

Domain	Start	End	E-Value	Type
coiled coil region	5	45	N/A	INTRINSIC
low complexity region	58	80	N/A	INTRINSIC
low complexity region	85	99	N/A	INTRINSIC
low complexity region	128	140	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132290

Predicted Effect

probably damaging
Transcript: ENSMUST00000136079
AA Change: N175Y

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000116812
Gene: ENSMUSG00000039205
AA Change: N175Y

Domain	Start	End	E-Value	Type
coiled coil region	5	45	N/A	INTRINSIC
low complexity region	58	80	N/A	INTRINSIC
low complexity region	85	99	N/A	INTRINSIC
low complexity region	128	140	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000136325

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137220

Predicted Effect

unknown
Transcript: ENSMUST00000139637
AA Change: N19Y

SMART Domains

Protein: ENSMUSP00000122469
Gene: ENSMUSG00000039205
AA Change: N19Y

Domain	Start	End	E-Value	Type
low complexity region	85	96	N/A	INTRINSIC
low complexity region	201	230	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000192758

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000147338

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145957

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000192055

Predicted Effect

probably benign
Transcript: ENSMUST00000151806

SMART Domains

Protein: ENSMUSP00000119429
Gene: ENSMUSG00000039205

Domain	Start	End	E-Value	Type
low complexity region	70	81	N/A	INTRINSIC

Coding Region Coverage

1x: 99.1%
3x: 98.1%
10x: 95.8%
20x: 91.5%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a zinc finger DNA binding protein that interacts with CIP1, part of a complex with cyclin E. The encoded protein may regulate the cellular localization of CIP1. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Apr 2012]
PHENOTYPE: Mice hoomozygous for a knock-out allele exhibit decreased body size and gender specific effects on motor phenotypes. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 93 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930579F01Rik	A	T	3: 138,173,582	L235Q	probably damaging	Het
Adam6b	T	A	12: 113,490,655	V364D	probably benign	Het
Akap13	T	C	7: 75,609,929	L767P	probably benign	Het
Akap13	T	A	7: 75,730,500	S2193T	probably damaging	Het
Anapc11	T	C	11: 120,605,377	V69A	probably benign	Het
Ankmy1	C	T	1: 92,896,190	R118Q	probably damaging	Het
Ankrd27	T	C	7: 35,638,053	S931P	probably benign	Het
Atp6v1c2	G	A	12: 17,288,168	R280C	probably damaging	Het
Bbs10	T	A	10: 111,300,052	I342N	probably damaging	Het
Calhm2	T	C	19: 47,132,950	D260G	possibly damaging	Het
Camk2a	A	G	18: 60,958,238	E264G	probably damaging	Het
Ccdc146	T	A	5: 21,319,545	M270L	probably benign	Het
Cdc16	A	G	8: 13,779,264	T517A	probably benign	Het
Ces1g	T	C	8: 93,331,193	H160R	probably benign	Het
Chst4	T	C	8: 110,030,394	N196S	probably damaging	Het
Cyb5r4	G	A	9: 87,027,040	V57I	probably damaging	Het
Cyth3	A	G	5: 143,684,426		probably benign	Het
Def6	A	G	17: 28,220,180	E255G	probably damaging	Het
Dhtkd1	T	G	2: 5,911,870	Q665P	probably damaging	Het
Dsg3	A	C	18: 20,539,747	D825A	probably damaging	Het
Eif3m	T	C	2: 105,005,000	T242A	probably benign	Het
Emilin3	A	G	2: 160,909,817	F101L	probably benign	Het
Epha7	A	G	4: 28,935,700		probably null	Het
Fam205a1	T	C	4: 42,851,161	I332V	probably benign	Het
Fbxo45	A	T	16: 32,238,405	Y224N	probably damaging	Het
Fhod3	A	T	18: 25,090,104	M836L	possibly damaging	Het
Fut4	C	A	9: 14,751,210	V263F	probably damaging	Het
Ggt1	C	T	10: 75,579,270	T206M	probably benign	Het
Gls	T	C	1: 52,188,699	R79G	probably damaging	Het
Gm436	A	T	4: 144,686,220	M50K	possibly damaging	Het
Grhl1	T	C	12: 24,581,515	S156P	probably benign	Het
Ipo8	C	T	6: 148,775,042	S983N	probably benign	Het
Kcna7	C	T	7: 45,409,444	A385V	probably damaging	Het
Kpnb1	A	T	11: 97,185,090	L40Q	probably damaging	Het
Matn1	A	T	4: 130,950,106	S209C	probably damaging	Het
Mcc	A	G	18: 44,475,222	I501T	probably benign	Het
Mdp1	A	T	14: 55,659,375	F104L	probably damaging	Het
Mib2	A	T	4: 155,656,288	N626K	probably damaging	Het
Mrgprh	T	C	17: 12,876,956	S28P	possibly damaging	Het
Mup-ps23	T	A	4: 61,856,149		noncoding transcript	Het
Myh15	A	G	16: 49,182,959	T1794A	possibly damaging	Het
Myo18a	C	G	11: 77,821,042	P680A	probably benign	Het
Myom2	G	T	8: 15,098,419	D532Y	possibly damaging	Het
Ndufaf5	A	G	2: 140,170,881	N57S	probably benign	Het
Nectin3	C	T	16: 46,458,187	V282M	probably damaging	Het
Nup188	G	T	2: 30,330,988	D997Y	probably damaging	Het
Olfm3	T	C	3: 115,122,805	V462A	probably damaging	Het
Olfr1044	A	C	2: 86,171,706	F37C	probably damaging	Het
Olfr1225	A	T	2: 89,170,413	F266L	probably benign	Het
Olfr305	A	T	7: 86,363,805	C177*	probably null	Het
Opcml	A	G	9: 28,813,398	H164R	possibly damaging	Het
Pacrg	A	G	17: 10,403,418	I209T	probably damaging	Het
Pcf11	T	C	7: 92,661,215	M522V	probably benign	Het
Pck1	T	A	2: 173,153,390	M1K	probably null	Het
Pcm1	G	T	8: 41,276,111	E707*	probably null	Het
Pcsk5	G	A	19: 17,654,849	R318W	probably damaging	Het
Phf11d	A	T	14: 59,353,344	M188K	possibly damaging	Het
Ppip5k2	A	T	1: 97,740,537	C615*	probably null	Het
Prkdc	T	A	16: 15,791,927	S3132T	probably damaging	Het
Prl2c5	A	T	13: 13,183,024		probably benign	Het
Prpsap2	A	G	11: 61,741,000	I177T	possibly damaging	Het
Rad50	A	G	11: 53,650,519	S1297P	probably damaging	Het
Rasip1	T	A	7: 45,635,244	N678K	possibly damaging	Het
Rubcn	A	G	16: 32,835,980	S544P	probably damaging	Het
Rwdd2a	A	T	9: 86,574,400	T210S	possibly damaging	Het
Scd2	A	G	19: 44,303,040	D306G	probably damaging	Het
Sema3b	T	C	9: 107,602,918	N207S	probably benign	Het
Sf3b2	C	T	19: 5,274,824	D845N	probably damaging	Het
Sipa1l2	C	A	8: 125,464,410	C947F	probably damaging	Het
Slc12a1	A	T	2: 125,226,031	T1013S	probably damaging	Het
Slc18a2	A	T	19: 59,287,367	I461L	probably benign	Het
Slc1a6	C	A	10: 78,801,922	Y427*	probably null	Het
Slc30a4	A	T	2: 122,689,399	I231K	probably damaging	Het
Sos1	G	T	17: 80,453,763	A168D	probably damaging	Het
Sptb	T	C	12: 76,621,371	S651G	probably benign	Het
Stk36	T	C	1: 74,633,620	L1007P	probably damaging	Het
Tek	A	T	4: 94,804,341	N229Y	probably damaging	Het
Tep1	A	G	14: 50,836,768	F1887L	possibly damaging	Het
Tet1	A	T	10: 62,878,209	C602*	probably null	Het
Tnfrsf19	A	G	14: 60,972,036	S262P	possibly damaging	Het
Trim5	T	C	7: 104,265,684	I393V	probably benign	Het
Trpm6	A	G	19: 18,853,587	E1272G	probably benign	Het
Ttc21b	A	T	2: 66,188,326	Y1246N	probably damaging	Het
Ttll3	T	A	6: 113,398,777	L151H	probably damaging	Het
U2surp	C	T	9: 95,484,443	V470I	probably benign	Het
Ubr1	A	T	2: 120,946,657	Y276N	probably benign	Het
Uggt1	A	G	1: 36,179,670	S59P	probably benign	Het
Unc45a	T	C	7: 80,326,344	T796A	probably damaging	Het
Unc5b	C	A	10: 60,778,940	V193F	possibly damaging	Het
Upp1	G	T	11: 9,129,590	M50I	probably benign	Het
Vps18	C	T	2: 119,293,905	R438C	probably damaging	Het
Zfp715	T	C	7: 43,299,336	Y400C	possibly damaging	Het
Zfp955b	T	C	17: 33,302,522	Y322H	probably benign	Het

Other mutations in Ciz1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00418:Ciz1	APN	2	32372388	missense	probably damaging	1.00
IGL01872:Ciz1	APN	2	32378109	utr 3 prime	probably benign
R0029:Ciz1	UTSW	2	32371419	splice site	probably benign
R0122:Ciz1	UTSW	2	32371419	splice site	probably benign
R0363:Ciz1	UTSW	2	32377363	critical splice donor site	probably null
R0653:Ciz1	UTSW	2	32372406	missense	probably damaging	1.00
R0816:Ciz1	UTSW	2	32376376	unclassified	probably benign
R1255:Ciz1	UTSW	2	32365876	critical splice donor site	probably null
R2116:Ciz1	UTSW	2	32367465	missense	probably damaging	0.99
R3161:Ciz1	UTSW	2	32370063	missense	probably benign	0.11
R3732:Ciz1	UTSW	2	32367483	missense	possibly damaging	0.68
R4014:Ciz1	UTSW	2	32374344	missense	probably damaging	0.96
R4386:Ciz1	UTSW	2	32370099	missense	possibly damaging	0.92
R4687:Ciz1	UTSW	2	32367465	missense	probably damaging	0.99
R4786:Ciz1	UTSW	2	32377527	missense	probably damaging	1.00
R4825:Ciz1	UTSW	2	32371741	missense	probably damaging	0.99
R4869:Ciz1	UTSW	2	32364235	missense	probably damaging	0.99
R4871:Ciz1	UTSW	2	32372288	splice site	probably benign
R5270:Ciz1	UTSW	2	32374499	splice site	probably null
R5429:Ciz1	UTSW	2	32376043	missense	possibly damaging	0.93
R5621:Ciz1	UTSW	2	32371741	missense	probably damaging	0.96
R5721:Ciz1	UTSW	2	32376040	missense	probably damaging	1.00
R5805:Ciz1	UTSW	2	32367396	missense	probably damaging	1.00
R5960:Ciz1	UTSW	2	32371216	missense	possibly damaging	0.85
R6187:Ciz1	UTSW	2	32370051	missense	possibly damaging	0.90
R6612:Ciz1	UTSW	2	32377311	missense	possibly damaging	0.93
R7006:Ciz1	UTSW	2	32371115	critical splice donor site	probably null
R7200:Ciz1	UTSW	2	32364287	missense	probably damaging	1.00
R7498:Ciz1	UTSW	2	32371749	missense	probably benign
R7574:Ciz1	UTSW	2	32367368	missense	probably benign	0.16
R7910:Ciz1	UTSW	2	32370127	critical splice donor site	probably null
R8390:Ciz1	UTSW	2	32367323	missense	probably benign	0.00
R8749:Ciz1	UTSW	2	32365836	missense	probably benign	0.03
R8765:Ciz1	UTSW	2	32370883	missense	probably damaging	0.99
R8784:Ciz1	UTSW	2	32370250	missense	probably benign	0.01
R8812:Ciz1	UTSW	2	32364274	missense	probably benign	0.00
R8927:Ciz1	UTSW	2	32367500	nonsense	probably null
R8928:Ciz1	UTSW	2	32367500	nonsense	probably null
R9681:Ciz1	UTSW	2	32370962	missense	possibly damaging	0.71
R9744:Ciz1	UTSW	2	32363847	missense	unknown
X0018:Ciz1	UTSW	2	32371252	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- GGCACTGAACCCCTGATATAACCTTG -3'
(R):5'- GGGTATGGCTAAAGTCACATTGAGACC -3'

Sequencing Primer
(F):5'- CCTGATATAACCTTGACCATTCAATC -3'
(R):5'- GCGCCTTCATTTTATAGACACTGAG -3'

Posted On

2013-04-24