Mutagenetix > Incidental Mutation

Incidental Mutation 'R0373:Pck1'

30589

Institutional Source

Beutler Lab

Gene Symbol

Pck1

Ensembl Gene

ENSMUSG00000027513

Gene Name

phosphoenolpyruvate carboxykinase 1, cytosolic

Synonyms

PEPCK, Pck-1

MMRRC Submission

038579-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R0373 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

173153048-173159273 bp(+) (GRCm38)

Type of Mutation

start codon destroyed

DNA Base Change (assembly)

T to A at 173153390 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Lysine at position 1 (M1K)

Ref Sequence

ENSEMBL: ENSMUSP00000029017 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029017]

AlphaFold

Q9Z2V4

Predicted Effect

probably null
Transcript: ENSMUST00000029017
AA Change: M1K

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000029017
Gene: ENSMUSG00000027513
AA Change: M1K

Domain	Start	End	E-Value	Type
Pfam:PEPCK	29	619	3.2e-275	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000136885

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150629

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000151269

Coding Region Coverage

1x: 99.1%
3x: 98.1%
10x: 95.8%
20x: 91.5%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a main control point for the regulation of gluconeogenesis. The cytosolic enzyme encoded by this gene, along with GTP, catalyzes the formation of phosphoenolpyruvate from oxaloacetate, with the release of carbon dioxide and GDP. The expression of this gene can be regulated by insulin, glucocorticoids, glucagon, cAMP, and diet. Defects in this gene are a cause of cytosolic phosphoenolpyruvate carboxykinase deficiency. A mitochondrial isozyme of the encoded protein also has been characterized. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a null allele exhibit early postnatal lethality, decreased body fat, decreased glycogen levels in the liver, and altered blood chemistry. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 93 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930579F01Rik	A	T	3: 138,173,582 (GRCm38)	L235Q	probably damaging	Het
Adam6b	T	A	12: 113,490,655 (GRCm38)	V364D	probably benign	Het
Akap13	T	A	7: 75,730,500 (GRCm38)	S2193T	probably damaging	Het
Akap13	T	C	7: 75,609,929 (GRCm38)	L767P	probably benign	Het
Anapc11	T	C	11: 120,605,377 (GRCm38)	V69A	probably benign	Het
Ankmy1	C	T	1: 92,896,190 (GRCm38)	R118Q	probably damaging	Het
Ankrd27	T	C	7: 35,638,053 (GRCm38)	S931P	probably benign	Het
Atp6v1c2	G	A	12: 17,288,168 (GRCm38)	R280C	probably damaging	Het
Bbs10	T	A	10: 111,300,052 (GRCm38)	I342N	probably damaging	Het
Calhm2	T	C	19: 47,132,950 (GRCm38)	D260G	possibly damaging	Het
Camk2a	A	G	18: 60,958,238 (GRCm38)	E264G	probably damaging	Het
Ccdc146	T	A	5: 21,319,545 (GRCm38)	M270L	probably benign	Het
Cdc16	A	G	8: 13,779,264 (GRCm38)	T517A	probably benign	Het
Ces1g	T	C	8: 93,331,193 (GRCm38)	H160R	probably benign	Het
Chst4	T	C	8: 110,030,394 (GRCm38)	N196S	probably damaging	Het
Ciz1	A	T	2: 32,367,467 (GRCm38)	N175Y	probably damaging	Het
Cyb5r4	G	A	9: 87,027,040 (GRCm38)	V57I	probably damaging	Het
Cyth3	A	G	5: 143,684,426 (GRCm38)		probably benign	Het
Def6	A	G	17: 28,220,180 (GRCm38)	E255G	probably damaging	Het
Dhtkd1	T	G	2: 5,911,870 (GRCm38)	Q665P	probably damaging	Het
Dsg3	A	C	18: 20,539,747 (GRCm38)	D825A	probably damaging	Het
Eif3m	T	C	2: 105,005,000 (GRCm38)	T242A	probably benign	Het
Emilin3	A	G	2: 160,909,817 (GRCm38)	F101L	probably benign	Het
Epha7	A	G	4: 28,935,700 (GRCm38)		probably null	Het
Fam205a1	T	C	4: 42,851,161 (GRCm38)	I332V	probably benign	Het
Fbxo45	A	T	16: 32,238,405 (GRCm38)	Y224N	probably damaging	Het
Fhod3	A	T	18: 25,090,104 (GRCm38)	M836L	possibly damaging	Het
Fut4	C	A	9: 14,751,210 (GRCm38)	V263F	probably damaging	Het
Ggt1	C	T	10: 75,579,270 (GRCm38)	T206M	probably benign	Het
Gls	T	C	1: 52,188,699 (GRCm38)	R79G	probably damaging	Het
Gm436	A	T	4: 144,686,220 (GRCm38)	M50K	possibly damaging	Het
Grhl1	T	C	12: 24,581,515 (GRCm38)	S156P	probably benign	Het
Ipo8	C	T	6: 148,775,042 (GRCm38)	S983N	probably benign	Het
Kcna7	C	T	7: 45,409,444 (GRCm38)	A385V	probably damaging	Het
Kpnb1	A	T	11: 97,185,090 (GRCm38)	L40Q	probably damaging	Het
Matn1	A	T	4: 130,950,106 (GRCm38)	S209C	probably damaging	Het
Mcc	A	G	18: 44,475,222 (GRCm38)	I501T	probably benign	Het
Mdp1	A	T	14: 55,659,375 (GRCm38)	F104L	probably damaging	Het
Mib2	A	T	4: 155,656,288 (GRCm38)	N626K	probably damaging	Het
Mrgprh	T	C	17: 12,876,956 (GRCm38)	S28P	possibly damaging	Het
Mup-ps23	T	A	4: 61,856,149 (GRCm38)		noncoding transcript	Het
Myh15	A	G	16: 49,182,959 (GRCm38)	T1794A	possibly damaging	Het
Myo18a	C	G	11: 77,821,042 (GRCm38)	P680A	probably benign	Het
Myom2	G	T	8: 15,098,419 (GRCm38)	D532Y	possibly damaging	Het
Ndufaf5	A	G	2: 140,170,881 (GRCm38)	N57S	probably benign	Het
Nectin3	C	T	16: 46,458,187 (GRCm38)	V282M	probably damaging	Het
Nup188	G	T	2: 30,330,988 (GRCm38)	D997Y	probably damaging	Het
Olfm3	T	C	3: 115,122,805 (GRCm38)	V462A	probably damaging	Het
Olfr1044	A	C	2: 86,171,706 (GRCm38)	F37C	probably damaging	Het
Olfr1225	A	T	2: 89,170,413 (GRCm38)	F266L	probably benign	Het
Olfr305	A	T	7: 86,363,805 (GRCm38)	C177*	probably null	Het
Opcml	A	G	9: 28,813,398 (GRCm38)	H164R	possibly damaging	Het
Pacrg	A	G	17: 10,403,418 (GRCm38)	I209T	probably damaging	Het
Pcf11	T	C	7: 92,661,215 (GRCm38)	M522V	probably benign	Het
Pcm1	G	T	8: 41,276,111 (GRCm38)	E707*	probably null	Het
Pcsk5	G	A	19: 17,654,849 (GRCm38)	R318W	probably damaging	Het
Phf11d	A	T	14: 59,353,344 (GRCm38)	M188K	possibly damaging	Het
Ppip5k2	A	T	1: 97,740,537 (GRCm38)	C615*	probably null	Het
Prkdc	T	A	16: 15,791,927 (GRCm38)	S3132T	probably damaging	Het
Prl2c5	A	T	13: 13,183,024 (GRCm38)		probably benign	Het
Prpsap2	A	G	11: 61,741,000 (GRCm38)	I177T	possibly damaging	Het
Rad50	A	G	11: 53,650,519 (GRCm38)	S1297P	probably damaging	Het
Rasip1	T	A	7: 45,635,244 (GRCm38)	N678K	possibly damaging	Het
Rubcn	A	G	16: 32,835,980 (GRCm38)	S544P	probably damaging	Het
Rwdd2a	A	T	9: 86,574,400 (GRCm38)	T210S	possibly damaging	Het
Scd2	A	G	19: 44,303,040 (GRCm38)	D306G	probably damaging	Het
Sema3b	T	C	9: 107,602,918 (GRCm38)	N207S	probably benign	Het
Sf3b2	C	T	19: 5,274,824 (GRCm38)	D845N	probably damaging	Het
Sipa1l2	C	A	8: 125,464,410 (GRCm38)	C947F	probably damaging	Het
Slc12a1	A	T	2: 125,226,031 (GRCm38)	T1013S	probably damaging	Het
Slc18a2	A	T	19: 59,287,367 (GRCm38)	I461L	probably benign	Het
Slc1a6	C	A	10: 78,801,922 (GRCm38)	Y427*	probably null	Het
Slc30a4	A	T	2: 122,689,399 (GRCm38)	I231K	probably damaging	Het
Sos1	G	T	17: 80,453,763 (GRCm38)	A168D	probably damaging	Het
Sptb	T	C	12: 76,621,371 (GRCm38)	S651G	probably benign	Het
Stk36	T	C	1: 74,633,620 (GRCm38)	L1007P	probably damaging	Het
Tek	A	T	4: 94,804,341 (GRCm38)	N229Y	probably damaging	Het
Tep1	A	G	14: 50,836,768 (GRCm38)	F1887L	possibly damaging	Het
Tet1	A	T	10: 62,878,209 (GRCm38)	C602*	probably null	Het
Tnfrsf19	A	G	14: 60,972,036 (GRCm38)	S262P	possibly damaging	Het
Trim5	T	C	7: 104,265,684 (GRCm38)	I393V	probably benign	Het
Trpm6	A	G	19: 18,853,587 (GRCm38)	E1272G	probably benign	Het
Ttc21b	A	T	2: 66,188,326 (GRCm38)	Y1246N	probably damaging	Het
Ttll3	T	A	6: 113,398,777 (GRCm38)	L151H	probably damaging	Het
U2surp	C	T	9: 95,484,443 (GRCm38)	V470I	probably benign	Het
Ubr1	A	T	2: 120,946,657 (GRCm38)	Y276N	probably benign	Het
Uggt1	A	G	1: 36,179,670 (GRCm38)	S59P	probably benign	Het
Unc45a	T	C	7: 80,326,344 (GRCm38)	T796A	probably damaging	Het
Unc5b	C	A	10: 60,778,940 (GRCm38)	V193F	possibly damaging	Het
Upp1	G	T	11: 9,129,590 (GRCm38)	M50I	probably benign	Het
Vps18	C	T	2: 119,293,905 (GRCm38)	R438C	probably damaging	Het
Zfp715	T	C	7: 43,299,336 (GRCm38)	Y400C	possibly damaging	Het
Zfp955b	T	C	17: 33,302,522 (GRCm38)	Y322H	probably benign	Het

Other mutations in Pck1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00496:Pck1	APN	2	173,154,118 (GRCm38)	critical splice donor site	probably null
IGL00817:Pck1	APN	2	173,153,432 (GRCm38)	missense	possibly damaging	0.47
IGL02476:Pck1	APN	2	173,158,282 (GRCm38)	missense	probably benign
IGL02803:Pck1	APN	2	173,156,004 (GRCm38)	missense	probably damaging	1.00
IGL02874:Pck1	APN	2	173,155,249 (GRCm38)	missense	probably damaging	1.00
IGL02886:Pck1	APN	2	173,154,856 (GRCm38)	missense	probably benign	0.43
Limestone	UTSW	2	173,158,560 (GRCm38)	missense	probably damaging	1.00
limpet	UTSW	2	173,154,012 (GRCm38)	missense	probably damaging	0.99
R0041:Pck1	UTSW	2	173,155,210 (GRCm38)	missense	probably benign	0.21
R0125:Pck1	UTSW	2	173,156,081 (GRCm38)	nonsense	probably null
R0238:Pck1	UTSW	2	173,157,068 (GRCm38)	missense	possibly damaging	0.91
R0238:Pck1	UTSW	2	173,157,068 (GRCm38)	missense	possibly damaging	0.91
R0595:Pck1	UTSW	2	173,157,029 (GRCm38)	missense	probably damaging	1.00
R1338:Pck1	UTSW	2	173,158,410 (GRCm38)	missense	probably benign	0.18
R1623:Pck1	UTSW	2	173,154,718 (GRCm38)	missense	probably benign	0.26
R1752:Pck1	UTSW	2	173,157,113 (GRCm38)	missense	probably benign	0.00
R2107:Pck1	UTSW	2	173,154,068 (GRCm38)	missense	probably benign	0.00
R2376:Pck1	UTSW	2	173,157,116 (GRCm38)	missense	probably benign
R2883:Pck1	UTSW	2	173,158,575 (GRCm38)	missense	probably benign	0.03
R3508:Pck1	UTSW	2	173,158,384 (GRCm38)	missense	possibly damaging	0.61
R4718:Pck1	UTSW	2	173,155,221 (GRCm38)	missense	probably damaging	0.99
R4853:Pck1	UTSW	2	173,154,714 (GRCm38)	nonsense	probably null
R4907:Pck1	UTSW	2	173,157,023 (GRCm38)	missense	probably damaging	1.00
R4950:Pck1	UTSW	2	173,154,827 (GRCm38)	missense	probably benign
R5073:Pck1	UTSW	2	173,156,977 (GRCm38)	missense	probably benign	0.41
R5134:Pck1	UTSW	2	173,153,489 (GRCm38)	missense	probably benign	0.23
R5213:Pck1	UTSW	2	173,156,085 (GRCm38)	nonsense	probably null
R5244:Pck1	UTSW	2	173,154,863 (GRCm38)	missense	possibly damaging	0.91
R5654:Pck1	UTSW	2	173,158,560 (GRCm38)	missense	probably damaging	1.00
R5831:Pck1	UTSW	2	173,156,999 (GRCm38)	missense	probably damaging	1.00
R6030:Pck1	UTSW	2	173,154,857 (GRCm38)	missense	probably benign	0.40
R6030:Pck1	UTSW	2	173,154,857 (GRCm38)	missense	probably benign	0.40
R6143:Pck1	UTSW	2	173,154,012 (GRCm38)	missense	probably damaging	0.99
R6276:Pck1	UTSW	2	173,157,319 (GRCm38)	missense	probably damaging	1.00
R7553:Pck1	UTSW	2	173,157,067 (GRCm38)	missense	probably benign	0.13
R7860:Pck1	UTSW	2	173,155,950 (GRCm38)	missense	possibly damaging	0.80
R8076:Pck1	UTSW	2	173,155,278 (GRCm38)	missense	probably damaging	1.00
R8187:Pck1	UTSW	2	173,155,240 (GRCm38)	missense	probably benign	0.23
R8523:Pck1	UTSW	2	173,157,271 (GRCm38)	missense	probably damaging	1.00
R8729:Pck1	UTSW	2	173,156,073 (GRCm38)	missense	probably damaging	1.00
R8982:Pck1	UTSW	2	173,157,319 (GRCm38)	missense	probably damaging	1.00
R9124:Pck1	UTSW	2	173,155,225 (GRCm38)	missense	probably benign	0.01
R9245:Pck1	UTSW	2	173,154,776 (GRCm38)	missense	probably damaging	1.00
R9520:Pck1	UTSW	2	173,156,061 (GRCm38)	missense	probably damaging	1.00
R9705:Pck1	UTSW	2	173,158,377 (GRCm38)	missense	possibly damaging	0.49

Predicted Primers

PCR Primer
(F):5'- AGCGATCTCTGATCCAGACCTTCC -3'
(R):5'- TTCTTCAGCTTGCGGATGACACCC -3'

Sequencing Primer
(F):5'- AGGCAGGGTCATTTCATTCAC -3'
(R):5'- GGATGACACCCTCCTCCTG -3'

Posted On

2013-04-24