Incidental Mutation 'IGL02741:Rfx1'
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Rfx1
Ensembl Gene ENSMUSG00000031706
Gene Nameregulatory factor X, 1 (influences HLA class II expression)
Accession Numbers
Is this an essential gene? Essential (E-score: 1.000) question?
Stock #IGL02741
Quality Score
Chromosomal Location84066834-84096992 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) A to G at 84095842 bp
Amino Acid Change Glutamine to Arginine at position 923 (Q923R)
Ref Sequence ENSEMBL: ENSMUSP00000005600 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000005600] [ENSMUST00000041367] [ENSMUST00000210279] [ENSMUST00000211046]
Predicted Effect possibly damaging
Transcript: ENSMUST00000005600
AA Change: Q923R

PolyPhen 2 Score 0.944 (Sensitivity: 0.80; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000005600
Gene: ENSMUSG00000031706
AA Change: Q923R

low complexity region 11 47 N/A INTRINSIC
low complexity region 53 67 N/A INTRINSIC
low complexity region 73 92 N/A INTRINSIC
Pfam:RFX1_trans_act 106 176 9.6e-9 PFAM
Pfam:RFX1_trans_act 211 366 1.8e-59 PFAM
Pfam:RFX_DNA_binding 420 498 2.5e-35 PFAM
Blast:HisKA 705 768 3e-28 BLAST
low complexity region 908 920 N/A INTRINSIC
low complexity region 932 948 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000041367
SMART Domains Protein: ENSMUSP00000038568
Gene: ENSMUSG00000037103

low complexity region 12 33 N/A INTRINSIC
Pfam:DCAF15_WD40 48 259 1.1e-84 PFAM
low complexity region 275 294 N/A INTRINSIC
low complexity region 343 359 N/A INTRINSIC
low complexity region 374 384 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000210279
Predicted Effect probably benign
Transcript: ENSMUST00000211046
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the regulatory factor X (RFX) family of transcription factors, which are characterized by a winged-helix DNA-binding domain. The encoded transcription factor contains an N-terminal activation domain and a C-terminal repression domain, and may activate or repress target gene expression depending on cellular context. This transcription factor has been shown to regulate a wide variety of genes involved in immunity and cancer, including the MHC class II genes and genes that may be involved in cancer progression. This gene exhibits altered expression in glioblastoma and the autoimmune disease systemic lupus erythematosis (SLE). [provided by RefSeq, Jul 2016]
PHENOTYPE: Mice homozygous for a gene trap allele die prior to implantation. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 35 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
A930004D18Rik T C 2: 18,027,196 Y37C unknown Het
Arhgap20 T A 9: 51,848,645 C599S probably benign Het
Bcl6b C A 11: 70,229,116 R15L probably damaging Het
Csgalnact1 C A 8: 68,401,492 G219V probably damaging Het
Dchs1 C T 7: 105,757,323 D2262N probably damaging Het
Dsg4 A G 18: 20,471,496 M1007V probably benign Het
Fgd6 A G 10: 94,123,290 K1032R possibly damaging Het
Fras1 T A 5: 96,691,371 M1583K probably benign Het
Gjc3 A T 5: 137,957,464 C186* probably null Het
Gm14496 A G 2: 181,991,343 R40G probably benign Het
Ibtk T C 9: 85,726,612 R416G probably damaging Het
Kcnc4 A G 3: 107,447,978 F385L probably damaging Het
Mapk8ip2 T C 15: 89,457,497 S304P probably damaging Het
Mbd6 A G 10: 127,287,394 probably null Het
Mroh2b T C 15: 4,905,632 F183S probably benign Het
Nrg1 T A 8: 31,822,288 T334S probably damaging Het
Pigw C T 11: 84,878,366 V46I probably benign Het
Pkdrej T C 15: 85,817,430 E1435G probably benign Het
Pkhd1 T C 1: 20,220,029 probably benign Het
Prkdc A T 16: 15,752,726 probably benign Het
Ptprd A T 4: 76,133,284 I247N probably damaging Het
Rgs11 G A 17: 26,207,631 V279I probably benign Het
Rps6ka2 T A 17: 7,296,016 F608I probably benign Het
Slc13a1 A T 6: 24,150,708 probably null Het
Slc6a20b C T 9: 123,607,602 V249M probably damaging Het
Slc9c1 A G 16: 45,581,598 I783V possibly damaging Het
Swap70 G T 7: 110,274,649 M401I probably benign Het
Tmco4 A T 4: 139,029,877 I407F probably damaging Het
Trpm4 T A 7: 45,318,488 S340C possibly damaging Het
Tsc2 T C 17: 24,629,969 E79G probably damaging Het
Ubr1 A C 2: 120,941,091 S439A probably benign Het
Vmn1r73 T C 7: 11,756,783 V176A probably benign Het
Vmn2r17 G A 5: 109,420,211 D67N probably benign Het
Wasf1 C T 10: 40,930,709 T116M probably damaging Het
Zkscan3 A T 13: 21,393,994 M241K probably benign Het
Other mutations in Rfx1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01612:Rfx1 APN 8 84092972 critical splice acceptor site probably null
IGL01779:Rfx1 APN 8 84092662 splice site probably benign
IGL02505:Rfx1 APN 8 84095809 missense possibly damaging 0.79
R1565:Rfx1 UTSW 8 84073946 missense probably benign
R1793:Rfx1 UTSW 8 84066421 unclassified probably benign
R1808:Rfx1 UTSW 8 84095048 missense probably damaging 1.00
R1971:Rfx1 UTSW 8 84095497 missense probably damaging 1.00
R4542:Rfx1 UTSW 8 84090237 missense probably damaging 1.00
R4690:Rfx1 UTSW 8 84082745 missense possibly damaging 0.50
R4995:Rfx1 UTSW 8 84080114 splice site probably null
R5163:Rfx1 UTSW 8 84093211 missense probably damaging 0.98
R5212:Rfx1 UTSW 8 84066592 unclassified probably benign
R5227:Rfx1 UTSW 8 84074058 missense probably damaging 0.99
R5401:Rfx1 UTSW 8 84066376 unclassified probably null
R5431:Rfx1 UTSW 8 84082720 nonsense probably null
R5584:Rfx1 UTSW 8 84088077 splice site probably null
R5693:Rfx1 UTSW 8 84073904 missense unknown
R6210:Rfx1 UTSW 8 84093018 missense probably damaging 1.00
R6715:Rfx1 UTSW 8 84095815 missense possibly damaging 0.49
R6920:Rfx1 UTSW 8 84095488 missense probably damaging 1.00
R7131:Rfx1 UTSW 8 84095079 missense probably damaging 0.96
R7155:Rfx1 UTSW 8 84094826 missense probably damaging 0.99
R7336:Rfx1 UTSW 8 84073756 start gained probably benign
R7467:Rfx1 UTSW 8 84073913 missense possibly damaging 0.86
Z1177:Rfx1 UTSW 8 84090277 missense probably damaging 1.00
Posted On2015-04-16