Incidental Mutation 'R0373:Unc5b'
ID 30627
Institutional Source Beutler Lab
Gene Symbol Unc5b
Ensembl Gene ENSMUSG00000020099
Gene Name unc-5 netrin receptor B
Synonyms Unc5h2, D10Bwg0792e, 6330415E02Rik
MMRRC Submission 038579-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R0373 (G1)
Quality Score 225
Status Not validated
Chromosome 10
Chromosomal Location 60762593-60831581 bp(-) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) C to A at 60778940 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Valine to Phenylalanine at position 193 (V193F)
Ref Sequence ENSEMBL: ENSMUSP00000151251 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000077925] [ENSMUST00000218637]
AlphaFold Q8K1S3
Predicted Effect possibly damaging
Transcript: ENSMUST00000077925
AA Change: V193F

PolyPhen 2 Score 0.780 (Sensitivity: 0.85; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000077080
Gene: ENSMUSG00000020099
AA Change: V193F

DomainStartEndE-ValueType
signal peptide 1 26 N/A INTRINSIC
IG_like 54 149 1.71e2 SMART
IGc2 165 232 2.58e-6 SMART
TSP1 249 300 8.21e-15 SMART
TSP1 305 354 2.61e-8 SMART
transmembrane domain 374 396 N/A INTRINSIC
low complexity region 491 504 N/A INTRINSIC
ZU5 541 644 1.91e-56 SMART
DEATH 852 943 5.55e-21 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000218316
Predicted Effect possibly damaging
Transcript: ENSMUST00000218637
AA Change: V193F

PolyPhen 2 Score 0.780 (Sensitivity: 0.85; Specificity: 0.93)
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.1%
  • 10x: 95.8%
  • 20x: 91.5%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the netrin family of receptors. This particular protein mediates the repulsive effect of netrin-1 and is a vascular netrin receptor. This encoded protein is also in a group of proteins called dependence receptors (DpRs) which are involved in pro- and anti-apoptotic processes. Many DpRs are involved in embryogenesis and in cancer progression. Two alternatively spliced transcript variants have been described for this gene. [provided by RefSeq, Oct 2011]
PHENOTYPE: Mice homozygous for a severely hypomorphic allele exhibit background sensitive lethality during organogenesis. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 93 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930579F01Rik A T 3: 138,173,582 (GRCm38) L235Q probably damaging Het
Adam6b T A 12: 113,490,655 (GRCm38) V364D probably benign Het
Akap13 T A 7: 75,730,500 (GRCm38) S2193T probably damaging Het
Akap13 T C 7: 75,609,929 (GRCm38) L767P probably benign Het
Anapc11 T C 11: 120,605,377 (GRCm38) V69A probably benign Het
Ankmy1 C T 1: 92,896,190 (GRCm38) R118Q probably damaging Het
Ankrd27 T C 7: 35,638,053 (GRCm38) S931P probably benign Het
Atp6v1c2 G A 12: 17,288,168 (GRCm38) R280C probably damaging Het
Bbs10 T A 10: 111,300,052 (GRCm38) I342N probably damaging Het
Calhm2 T C 19: 47,132,950 (GRCm38) D260G possibly damaging Het
Camk2a A G 18: 60,958,238 (GRCm38) E264G probably damaging Het
Ccdc146 T A 5: 21,319,545 (GRCm38) M270L probably benign Het
Cdc16 A G 8: 13,779,264 (GRCm38) T517A probably benign Het
Ces1g T C 8: 93,331,193 (GRCm38) H160R probably benign Het
Chst4 T C 8: 110,030,394 (GRCm38) N196S probably damaging Het
Ciz1 A T 2: 32,367,467 (GRCm38) N175Y probably damaging Het
Cyb5r4 G A 9: 87,027,040 (GRCm38) V57I probably damaging Het
Cyth3 A G 5: 143,684,426 (GRCm38) probably benign Het
Def6 A G 17: 28,220,180 (GRCm38) E255G probably damaging Het
Dhtkd1 T G 2: 5,911,870 (GRCm38) Q665P probably damaging Het
Dsg3 A C 18: 20,539,747 (GRCm38) D825A probably damaging Het
Eif3m T C 2: 105,005,000 (GRCm38) T242A probably benign Het
Emilin3 A G 2: 160,909,817 (GRCm38) F101L probably benign Het
Epha7 A G 4: 28,935,700 (GRCm38) probably null Het
Fam205a1 T C 4: 42,851,161 (GRCm38) I332V probably benign Het
Fbxo45 A T 16: 32,238,405 (GRCm38) Y224N probably damaging Het
Fhod3 A T 18: 25,090,104 (GRCm38) M836L possibly damaging Het
Fut4 C A 9: 14,751,210 (GRCm38) V263F probably damaging Het
Ggt1 C T 10: 75,579,270 (GRCm38) T206M probably benign Het
Gls T C 1: 52,188,699 (GRCm38) R79G probably damaging Het
Gm436 A T 4: 144,686,220 (GRCm38) M50K possibly damaging Het
Grhl1 T C 12: 24,581,515 (GRCm38) S156P probably benign Het
Ipo8 C T 6: 148,775,042 (GRCm38) S983N probably benign Het
Kcna7 C T 7: 45,409,444 (GRCm38) A385V probably damaging Het
Kpnb1 A T 11: 97,185,090 (GRCm38) L40Q probably damaging Het
Matn1 A T 4: 130,950,106 (GRCm38) S209C probably damaging Het
Mcc A G 18: 44,475,222 (GRCm38) I501T probably benign Het
Mdp1 A T 14: 55,659,375 (GRCm38) F104L probably damaging Het
Mib2 A T 4: 155,656,288 (GRCm38) N626K probably damaging Het
Mrgprh T C 17: 12,876,956 (GRCm38) S28P possibly damaging Het
Mup-ps23 T A 4: 61,856,149 (GRCm38) noncoding transcript Het
Myh15 A G 16: 49,182,959 (GRCm38) T1794A possibly damaging Het
Myo18a C G 11: 77,821,042 (GRCm38) P680A probably benign Het
Myom2 G T 8: 15,098,419 (GRCm38) D532Y possibly damaging Het
Ndufaf5 A G 2: 140,170,881 (GRCm38) N57S probably benign Het
Nectin3 C T 16: 46,458,187 (GRCm38) V282M probably damaging Het
Nup188 G T 2: 30,330,988 (GRCm38) D997Y probably damaging Het
Olfm3 T C 3: 115,122,805 (GRCm38) V462A probably damaging Het
Olfr1044 A C 2: 86,171,706 (GRCm38) F37C probably damaging Het
Olfr1225 A T 2: 89,170,413 (GRCm38) F266L probably benign Het
Olfr305 A T 7: 86,363,805 (GRCm38) C177* probably null Het
Opcml A G 9: 28,813,398 (GRCm38) H164R possibly damaging Het
Pacrg A G 17: 10,403,418 (GRCm38) I209T probably damaging Het
Pcf11 T C 7: 92,661,215 (GRCm38) M522V probably benign Het
Pck1 T A 2: 173,153,390 (GRCm38) M1K probably null Het
Pcm1 G T 8: 41,276,111 (GRCm38) E707* probably null Het
Pcsk5 G A 19: 17,654,849 (GRCm38) R318W probably damaging Het
Phf11d A T 14: 59,353,344 (GRCm38) M188K possibly damaging Het
Ppip5k2 A T 1: 97,740,537 (GRCm38) C615* probably null Het
Prkdc T A 16: 15,791,927 (GRCm38) S3132T probably damaging Het
Prl2c5 A T 13: 13,183,024 (GRCm38) probably benign Het
Prpsap2 A G 11: 61,741,000 (GRCm38) I177T possibly damaging Het
Rad50 A G 11: 53,650,519 (GRCm38) S1297P probably damaging Het
Rasip1 T A 7: 45,635,244 (GRCm38) N678K possibly damaging Het
Rubcn A G 16: 32,835,980 (GRCm38) S544P probably damaging Het
Rwdd2a A T 9: 86,574,400 (GRCm38) T210S possibly damaging Het
Scd2 A G 19: 44,303,040 (GRCm38) D306G probably damaging Het
Sema3b T C 9: 107,602,918 (GRCm38) N207S probably benign Het
Sf3b2 C T 19: 5,274,824 (GRCm38) D845N probably damaging Het
Sipa1l2 C A 8: 125,464,410 (GRCm38) C947F probably damaging Het
Slc12a1 A T 2: 125,226,031 (GRCm38) T1013S probably damaging Het
Slc18a2 A T 19: 59,287,367 (GRCm38) I461L probably benign Het
Slc1a6 C A 10: 78,801,922 (GRCm38) Y427* probably null Het
Slc30a4 A T 2: 122,689,399 (GRCm38) I231K probably damaging Het
Sos1 G T 17: 80,453,763 (GRCm38) A168D probably damaging Het
Sptb T C 12: 76,621,371 (GRCm38) S651G probably benign Het
Stk36 T C 1: 74,633,620 (GRCm38) L1007P probably damaging Het
Tek A T 4: 94,804,341 (GRCm38) N229Y probably damaging Het
Tep1 A G 14: 50,836,768 (GRCm38) F1887L possibly damaging Het
Tet1 A T 10: 62,878,209 (GRCm38) C602* probably null Het
Tnfrsf19 A G 14: 60,972,036 (GRCm38) S262P possibly damaging Het
Trim5 T C 7: 104,265,684 (GRCm38) I393V probably benign Het
Trpm6 A G 19: 18,853,587 (GRCm38) E1272G probably benign Het
Ttc21b A T 2: 66,188,326 (GRCm38) Y1246N probably damaging Het
Ttll3 T A 6: 113,398,777 (GRCm38) L151H probably damaging Het
U2surp C T 9: 95,484,443 (GRCm38) V470I probably benign Het
Ubr1 A T 2: 120,946,657 (GRCm38) Y276N probably benign Het
Uggt1 A G 1: 36,179,670 (GRCm38) S59P probably benign Het
Unc45a T C 7: 80,326,344 (GRCm38) T796A probably damaging Het
Upp1 G T 11: 9,129,590 (GRCm38) M50I probably benign Het
Vps18 C T 2: 119,293,905 (GRCm38) R438C probably damaging Het
Zfp715 T C 7: 43,299,336 (GRCm38) Y400C possibly damaging Het
Zfp955b T C 17: 33,302,522 (GRCm38) Y322H probably benign Het
Other mutations in Unc5b
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00485:Unc5b APN 10 60,783,216 (GRCm38) missense possibly damaging 0.73
IGL00578:Unc5b APN 10 60,767,055 (GRCm38) missense probably damaging 1.00
IGL01895:Unc5b APN 10 60,767,085 (GRCm38) missense probably damaging 1.00
IGL01955:Unc5b APN 10 60,778,255 (GRCm38) missense probably benign 0.30
IGL01980:Unc5b APN 10 60,780,187 (GRCm38) missense probably damaging 1.00
IGL02277:Unc5b APN 10 60,774,742 (GRCm38) missense probably benign
LCD18:Unc5b UTSW 10 60,786,171 (GRCm38) intron probably benign
R0021:Unc5b UTSW 10 60,778,919 (GRCm38) missense probably benign 0.17
R0021:Unc5b UTSW 10 60,778,919 (GRCm38) missense probably benign 0.17
R0026:Unc5b UTSW 10 60,774,592 (GRCm38) missense possibly damaging 0.86
R0147:Unc5b UTSW 10 60,772,297 (GRCm38) missense probably damaging 0.96
R0305:Unc5b UTSW 10 60,779,658 (GRCm38) splice site probably benign
R0306:Unc5b UTSW 10 60,779,658 (GRCm38) splice site probably benign
R0662:Unc5b UTSW 10 60,772,583 (GRCm38) missense possibly damaging 0.68
R1208:Unc5b UTSW 10 60,766,992 (GRCm38) missense probably damaging 1.00
R1208:Unc5b UTSW 10 60,766,992 (GRCm38) missense probably damaging 1.00
R1512:Unc5b UTSW 10 60,831,475 (GRCm38) unclassified probably benign
R1532:Unc5b UTSW 10 60,769,232 (GRCm38) missense probably damaging 0.99
R1916:Unc5b UTSW 10 60,778,248 (GRCm38) missense probably damaging 1.00
R1931:Unc5b UTSW 10 60,772,569 (GRCm38) missense probably benign 0.30
R1954:Unc5b UTSW 10 60,769,265 (GRCm38) splice site probably benign
R2350:Unc5b UTSW 10 60,778,200 (GRCm38) missense probably benign 0.04
R3419:Unc5b UTSW 10 60,778,814 (GRCm38) missense probably damaging 1.00
R4116:Unc5b UTSW 10 60,774,700 (GRCm38) missense probably damaging 0.99
R4258:Unc5b UTSW 10 60,765,371 (GRCm38) missense probably damaging 0.99
R4329:Unc5b UTSW 10 60,783,190 (GRCm38) missense probably damaging 1.00
R4605:Unc5b UTSW 10 60,774,403 (GRCm38) missense probably benign 0.01
R4828:Unc5b UTSW 10 60,772,348 (GRCm38) missense possibly damaging 0.90
R5134:Unc5b UTSW 10 60,775,100 (GRCm38) missense probably benign 0.09
R5190:Unc5b UTSW 10 60,772,293 (GRCm38) missense probably benign 0.04
R5240:Unc5b UTSW 10 60,774,640 (GRCm38) missense probably damaging 0.99
R5342:Unc5b UTSW 10 60,778,267 (GRCm38) nonsense probably null
R5522:Unc5b UTSW 10 60,778,195 (GRCm38) missense possibly damaging 0.91
R5694:Unc5b UTSW 10 60,773,747 (GRCm38) missense probably benign 0.02
R5822:Unc5b UTSW 10 60,772,527 (GRCm38) missense possibly damaging 0.71
R5909:Unc5b UTSW 10 60,772,359 (GRCm38) missense probably damaging 1.00
R6007:Unc5b UTSW 10 60,765,360 (GRCm38) missense probably damaging 1.00
R6115:Unc5b UTSW 10 60,777,546 (GRCm38) missense probably benign 0.33
R6182:Unc5b UTSW 10 60,765,236 (GRCm38) missense probably damaging 1.00
R6187:Unc5b UTSW 10 60,772,224 (GRCm38) missense probably damaging 1.00
R6294:Unc5b UTSW 10 60,778,331 (GRCm38) missense possibly damaging 0.82
R6319:Unc5b UTSW 10 60,778,801 (GRCm38) missense probably damaging 1.00
R6366:Unc5b UTSW 10 60,778,312 (GRCm38) missense probably benign
R6532:Unc5b UTSW 10 60,778,828 (GRCm38) missense possibly damaging 0.95
R6827:Unc5b UTSW 10 60,780,232 (GRCm38) missense probably benign
R6912:Unc5b UTSW 10 60,831,092 (GRCm38) missense probably benign
R7032:Unc5b UTSW 10 60,778,808 (GRCm38) missense probably damaging 0.99
R7082:Unc5b UTSW 10 60,775,088 (GRCm38) missense probably damaging 0.98
R7089:Unc5b UTSW 10 60,777,486 (GRCm38) missense probably damaging 1.00
R7270:Unc5b UTSW 10 60,772,223 (GRCm38) nonsense probably null
R7587:Unc5b UTSW 10 60,783,120 (GRCm38) missense probably damaging 1.00
R7716:Unc5b UTSW 10 60,777,438 (GRCm38) missense probably damaging 1.00
R7750:Unc5b UTSW 10 60,775,044 (GRCm38) missense probably benign 0.00
R7810:Unc5b UTSW 10 60,765,241 (GRCm38) missense probably benign
R7895:Unc5b UTSW 10 60,779,730 (GRCm38) missense possibly damaging 0.65
R7942:Unc5b UTSW 10 60,777,543 (GRCm38) missense probably damaging 1.00
R8264:Unc5b UTSW 10 60,768,334 (GRCm38) missense probably benign 0.22
R9100:Unc5b UTSW 10 60,768,373 (GRCm38) missense probably damaging 1.00
R9188:Unc5b UTSW 10 60,773,771 (GRCm38) missense probably damaging 1.00
R9287:Unc5b UTSW 10 60,773,753 (GRCm38) missense possibly damaging 0.88
R9441:Unc5b UTSW 10 60,772,249 (GRCm38) missense probably damaging 1.00
R9664:Unc5b UTSW 10 60,777,543 (GRCm38) missense probably damaging 1.00
RF019:Unc5b UTSW 10 60,783,183 (GRCm38) missense probably damaging 1.00
X0027:Unc5b UTSW 10 60,777,459 (GRCm38) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- ACCTAATGAGGGTCTACCCAGTGTG -3'
(R):5'- ACGGCCACCGTTTAGAGATGAGAG -3'

Sequencing Primer
(F):5'- TCTTGGTAGAGGGGTAACACC -3'
(R):5'- AGGGATGGGGTAACCACC -3'
Posted On 2013-04-24